Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47064 * 2 1 4 4 C 1.53006 * 109.46985 * 185.17585 * 3 2 1 5 5 C 1.52999 * 109.47438 * 305.17818 * 3 2 1 6 6 C 1.50700 * 109.46770 * 300.00212 * 5 3 2 7 7 O 1.20826 * 120.00202 * 359.97438 * 6 5 3 8 8 O 1.34233 * 120.00083 * 180.02562 * 6 5 3 9 9 C 1.50704 * 109.46804 * 65.17782 * 3 2 1 10 10 O 1.21279 * 119.99519 * 243.42196 * 9 3 2 11 11 N 1.34770 * 120.00102 * 63.42723 * 9 3 2 12 12 C 1.46505 * 120.00259 * 175.20278 * 11 9 3 13 13 C 1.52994 * 109.47263 * 184.10197 * 12 11 9 14 14 C 1.50702 * 115.55218 * 306.72002 * 13 12 11 15 15 H 1.07997 * 120.00073 * 144.67202 * 14 13 12 16 16 C 1.37878 * 119.99874 * 324.67027 * 14 13 12 17 17 N 1.31522 * 119.99991 * 350.02830 * 16 14 13 18 18 Si 1.86794 * 120.00020 * 170.02870 * 16 14 13 19 19 H 1.48498 * 109.47207 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47432 * 120.00166 * 18 16 14 21 21 H 1.48500 * 109.47384 * 240.00056 * 18 16 14 22 22 C 1.53004 * 117.49668 * 161.04991 * 13 12 11 23 23 C 1.53000 * 117.49992 * 92.39567 * 13 12 11 24 24 H 1.09001 * 109.47160 * 59.99737 * 1 2 3 25 25 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47046 * 300.00185 * 1 2 3 27 27 H 1.08999 * 109.46582 * 240.00022 * 2 1 3 28 28 H 1.09001 * 109.47160 * 120.00263 * 2 1 3 29 29 H 1.08994 * 109.47098 * 168.49141 * 4 3 2 30 30 H 1.08998 * 109.47008 * 48.49034 * 4 3 2 31 31 H 1.09000 * 109.47032 * 288.49402 * 4 3 2 32 32 H 1.08998 * 109.47215 * 59.99410 * 5 3 2 33 33 H 1.08999 * 109.47168 * 179.97438 * 5 3 2 34 34 H 0.96692 * 117.00202 * 179.97438 * 8 6 5 35 35 H 0.97008 * 120.00159 * 355.20675 * 11 9 3 36 36 H 1.09004 * 109.46697 * 304.10630 * 12 11 9 37 37 H 1.09000 * 109.46526 * 64.10060 * 12 11 9 38 38 H 0.96999 * 119.99604 * 185.04484 * 17 16 14 39 39 H 1.09001 * 117.49786 * 0.02562 * 22 13 12 40 40 H 1.08998 * 117.49670 * 145.01525 * 22 13 12 41 41 H 1.09001 * 117.49664 * 214.98142 * 23 13 12 42 42 H 1.09004 * 117.50023 * 359.96964 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 -0.1301 5 6 1.4265 2.2004 -1.1790 6 6 1.8214 1.5279 -2.4685 7 8 2.5220 0.5438 -2.4468 8 8 1.3956 2.0229 -3.6414 9 6 1.6450 2.1149 1.2896 10 8 0.8920 3.0654 1.2719 11 7 2.1287 1.6600 2.4624 12 6 1.8300 2.3760 3.7052 13 6 2.5764 1.7159 4.8661 14 6 2.3578 0.2328 5.0200 15 1 3.1663 -0.4004 5.3544 16 6 1.1256 -0.3158 4.7340 17 7 0.0912 0.4674 4.5181 18 14 0.9253 -2.1712 4.6531 19 1 2.2304 -2.8226 4.9314 20 1 -0.0713 -2.6061 5.6645 21 1 0.4575 -2.5600 3.2984 22 6 2.7665 2.5382 6.1424 23 6 3.9588 2.2669 5.2216 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9104 2.4575 -0.3349 30 1 3.8602 0.7873 -0.9479 31 1 4.0090 1.0898 0.7998 32 1 0.3405 2.1989 -1.0864 33 1 1.7895 3.2282 -1.1787 34 1 1.6752 1.5576 -4.4416 35 1 2.6747 0.8584 2.4837 36 1 2.1485 3.4143 3.6118 37 1 0.7574 2.3407 3.8958 38 1 -0.7898 0.0826 4.3894 39 1 2.3594 3.5492 6.1549 40 1 2.7337 2.0063 7.0932 41 1 4.7100 1.5566 5.5671 42 1 4.3367 3.0993 4.6281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601982887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = -116.257705 kcal Electronic energy + Delta-G solvation = -23995.739486 eV Core-core repulsion = 20555.312301 eV Total energy + Delta-G solvation = -3440.427184 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.81703 -39.20684 -36.95111 -36.35875 -35.07603 -33.07391 -32.19105 -30.51194 -28.59926 -26.15186 -25.37367 -23.74353 -22.45841 -21.32764 -21.01015 -19.31973 -18.42885 -18.18910 -16.61747 -16.31958 -16.10872 -15.30067 -15.13434 -15.01578 -14.70250 -14.01386 -13.58152 -13.46454 -13.40223 -12.81073 -12.70264 -12.38710 -12.13787 -11.93165 -11.74520 -11.71026 -11.55390 -11.44287 -11.08434 -10.83328 -10.79179 -10.53938 -10.51245 -10.37684 -10.27908 -10.17403 -9.62020 -9.16048 -8.89198 -8.81884 -8.26689 -7.84077 -6.08913 -4.19637 2.18944 2.97091 3.18380 3.29457 3.31751 3.41997 4.15504 4.27991 4.62546 4.91224 4.99935 5.07122 5.37816 5.46028 5.53619 5.62766 5.64546 5.70479 5.86716 5.93822 5.99948 6.02879 6.19484 6.25497 6.29860 6.40584 6.45300 6.54194 6.54499 6.60142 6.68708 6.74051 6.89544 7.07702 7.26415 7.55116 7.58276 7.87971 7.90760 8.30274 8.52875 8.80565 9.11725 9.41557 10.87314 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.005961 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.780944 B = 4695.912298 C = 5437.360484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.065 4.065 4 C -0.152 4.152 5 C -0.093 4.093 6 C 0.481 3.519 7 O -0.508 6.508 8 O -0.519 6.519 9 C 0.518 3.482 10 O -0.564 6.564 11 N -0.682 5.682 12 C 0.162 3.838 13 C 0.038 3.962 14 C -0.500 4.500 15 H 0.062 0.938 16 C 0.078 3.922 17 N -0.864 5.864 18 Si 0.885 3.115 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.280 1.280 22 C -0.196 4.196 23 C -0.212 4.212 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.406 0.594 35 H 0.400 0.600 36 H 0.025 0.975 37 H 0.109 0.891 38 H 0.263 0.737 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 0.963 -12.153 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.069 4.069 4 C -0.209 4.209 5 C -0.131 4.131 6 C 0.325 3.675 7 O -0.396 6.396 8 O -0.331 6.331 9 C 0.302 3.698 10 O -0.445 6.445 11 N -0.329 5.329 12 C 0.039 3.961 13 C 0.037 3.963 14 C -0.537 4.537 15 H 0.080 0.920 16 C -0.127 4.127 17 N -0.500 5.500 18 Si 0.712 3.288 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.206 1.206 22 C -0.235 4.235 23 C -0.249 4.249 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.264 0.736 35 H 0.236 0.764 36 H 0.043 0.957 37 H 0.127 0.873 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.451 1.572 -11.863 12.215 hybrid contribution 0.264 -1.640 -0.313 1.690 sum 2.715 -0.068 -12.175 12.475 Atomic orbital electron populations 1.21866 0.95776 1.01635 1.02062 1.21820 0.96196 0.93823 1.04212 1.20585 0.97399 0.96621 0.92280 1.22094 0.92378 1.02559 1.03888 1.21255 1.04678 1.00453 0.86666 1.23614 0.76247 0.82125 0.85555 1.90611 1.35599 1.25965 1.87444 1.84571 1.72148 1.59104 1.17266 1.19959 0.80795 0.84028 0.85001 1.90625 1.36549 1.29701 1.87622 1.45730 1.51520 1.29519 1.06120 1.21011 1.03536 0.90486 0.81090 1.19194 0.91341 0.94217 0.91499 1.20508 0.97236 0.89772 1.46166 0.92012 1.24952 0.95855 0.97760 0.94166 1.69865 0.99237 1.34257 1.46605 0.86637 0.78361 0.85748 0.78015 1.19641 1.20978 1.20560 1.22911 1.03433 1.00142 0.96968 1.22957 0.92988 1.02894 1.06079 0.93348 0.92786 0.91600 0.89108 0.90964 0.92755 0.89691 0.91619 0.86599 0.87255 0.73581 0.76435 0.95674 0.87297 0.92687 0.91557 0.90238 0.90651 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.23 37.16 0.34 -2.15 16 2 C -0.12 -1.94 4.57 -26.73 -0.12 -2.06 16 3 C -0.07 -1.02 0.40 -155.66 -0.06 -1.08 16 4 C -0.15 -2.14 8.03 37.16 0.30 -1.84 16 5 C -0.09 -1.28 3.65 -27.88 -0.10 -1.38 16 6 C 0.48 5.92 7.76 36.01 0.28 6.20 16 7 O -0.51 -7.08 12.22 -18.75 -0.23 -7.31 16 8 O -0.52 -5.01 13.42 -39.26 -0.53 -5.54 16 9 C 0.52 10.13 5.47 -10.99 -0.06 10.07 16 10 O -0.56 -12.66 15.99 5.56 0.09 -12.57 16 11 N -0.68 -14.10 4.93 -60.29 -0.30 -14.40 16 12 C 0.16 3.73 4.74 -4.04 -0.02 3.71 16 13 C 0.04 0.88 2.00 -155.66 -0.31 0.57 16 14 C -0.50 -12.44 8.25 -34.44 -0.28 -12.72 16 15 H 0.06 1.56 7.83 -52.49 -0.41 1.14 16 16 C 0.08 1.94 5.14 -17.82 -0.09 1.85 16 17 N -0.86 -22.54 10.75 55.43 0.60 -21.94 16 18 Si 0.89 19.72 29.55 -169.99 -5.02 14.69 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 22 C -0.20 -4.26 9.96 -26.70 -0.27 -4.53 16 23 C -0.21 -4.35 9.92 -26.70 -0.26 -4.62 16 24 H 0.05 0.68 6.34 -51.93 -0.33 0.35 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.24 7.39 -51.93 -0.38 0.86 16 27 H 0.09 1.37 5.63 -51.93 -0.29 1.08 16 28 H 0.07 1.22 7.53 -51.93 -0.39 0.82 16 29 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.08 1.17 5.82 -51.93 -0.30 0.87 16 31 H 0.06 0.93 7.17 -51.93 -0.37 0.56 16 32 H 0.12 1.64 6.26 -51.93 -0.33 1.31 16 33 H 0.11 1.44 8.13 -51.93 -0.42 1.02 16 34 H 0.41 2.09 9.10 45.56 0.41 2.50 16 35 H 0.40 8.08 6.62 -40.82 -0.27 7.80 16 36 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.11 2.87 6.05 -51.93 -0.31 2.56 16 38 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -28.66 336.39 -6.47 -35.13 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -5.49 Total: 14.84 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -0.66 Total: -7.97 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.30 Total: -36.34 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.67 Total: -25.42 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.66 -6.47 -35.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601982887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.126 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds