Wall clock time and date at job start Tue Mar 31 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47014 * 2 1 4 4 C 1.53002 * 109.47236 * 240.00279 * 2 1 3 5 5 C 1.50703 * 109.47108 * 59.99801 * 4 2 1 6 6 H 1.07994 * 119.99781 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99752 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99852 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99873 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47018 * 90.00226 * 9 7 5 11 11 H 1.48495 * 109.47411 * 209.99571 * 9 7 5 12 12 H 1.48494 * 109.47583 * 330.00295 * 9 7 5 13 13 C 1.52996 * 109.47105 * 120.00130 * 2 1 3 14 14 N 1.46503 * 109.46848 * 299.99866 * 13 2 1 15 15 C 1.34778 * 119.99448 * 179.72362 * 14 13 2 16 16 O 1.21276 * 120.00301 * 0.28156 * 15 14 13 17 17 C 1.50707 * 119.99974 * 180.27610 * 15 14 13 18 18 H 1.08995 * 112.84586 * 334.99146 * 17 15 14 19 19 C 1.53780 * 113.61744 * 203.79225 * 17 15 14 20 20 C 1.53781 * 87.08095 * 270.88365 * 19 17 15 21 21 C 1.53776 * 113.61135 * 106.29228 * 17 15 14 22 22 H 1.09003 * 113.61483 * 203.67085 * 21 17 15 23 23 C 1.50698 * 113.61835 * 334.56943 * 21 17 15 24 24 O 1.20824 * 119.99888 * 96.18577 * 23 21 17 25 25 O 1.34230 * 120.00246 * 276.18754 * 23 21 17 26 26 H 1.09004 * 109.47585 * 299.99866 * 1 2 3 27 27 H 1.09001 * 109.47216 * 60.00414 * 1 2 3 28 28 H 1.09001 * 109.47389 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47248 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47295 * 300.00002 * 3 2 1 31 31 H 1.09001 * 109.46906 * 60.00199 * 3 2 1 32 32 H 1.08996 * 109.46931 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.46862 * 299.99706 * 4 2 1 34 34 H 0.97003 * 119.99483 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47176 * 180.02562 * 13 2 1 36 36 H 1.08992 * 109.47163 * 60.00229 * 13 2 1 37 37 H 0.96998 * 120.00108 * 0.02562 * 14 13 2 38 38 H 1.08998 * 113.60821 * 25.42961 * 19 17 15 39 39 H 1.08999 * 113.61085 * 156.25140 * 19 17 15 40 40 H 1.09004 * 113.61732 * 89.11148 * 20 19 17 41 41 H 1.08993 * 113.61804 * 220.02002 * 20 19 17 42 42 H 0.96696 * 116.99828 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6265 -1.5513 -3.8526 9 14 1.2471 0.3981 -5.2572 10 1 2.2251 1.4397 -5.6620 11 1 1.0818 -0.5812 -6.3611 12 1 -0.0610 1.0356 -4.9611 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8726 -0.4944 3.6694 16 8 2.5699 -1.4804 3.7807 17 6 1.3652 0.2124 4.9000 18 1 1.1420 1.2643 4.7220 19 6 2.2269 -0.0317 6.1500 20 6 1.3414 -1.2586 6.4246 21 6 0.2394 -0.5441 5.6246 22 1 -0.3961 0.0981 6.2343 23 6 -0.5463 -1.4634 4.7254 24 8 -0.2660 -2.6373 4.6681 25 8 -1.5576 -0.9781 3.9881 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2493 34 1 2.8602 -1.8831 -4.7337 35 1 3.1299 -0.7209 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.9936 0.7578 2.3564 38 1 3.2631 -0.2829 5.9237 39 1 2.1359 0.7514 6.9028 40 1 1.7019 -2.1720 5.9514 41 1 1.0978 -1.3944 7.4782 42 1 -2.0324 -1.6063 3.4269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601983067.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:23 Heat of formation + Delta-G solvation = -127.345241 kcal Electronic energy + Delta-G solvation = -23273.074655 eV Core-core repulsion = 19832.166679 eV Total energy + Delta-G solvation = -3440.907976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31743 -39.52624 -37.93627 -36.62959 -36.05696 -33.63479 -32.10389 -27.81190 -27.68690 -26.96864 -26.53709 -25.45091 -23.01231 -22.29509 -21.08892 -19.47844 -18.37010 -18.01250 -17.37575 -16.55094 -16.28785 -16.14993 -15.22868 -14.95957 -14.78564 -14.47165 -14.17456 -13.63480 -13.30979 -13.05259 -12.84488 -12.74259 -12.49368 -12.07500 -12.06790 -11.65068 -11.49128 -11.23634 -11.16421 -11.02994 -10.86732 -10.80511 -10.65737 -10.49498 -10.42592 -10.27096 -9.89983 -9.74429 -9.17808 -8.94126 -8.76023 -8.37121 -6.00992 -4.02553 2.04815 2.59910 2.84129 3.29926 3.34460 3.37318 3.39331 4.03707 4.26301 4.43735 4.44188 4.57385 4.98922 5.03774 5.28772 5.33704 5.34471 5.47540 5.49960 5.60040 5.69981 5.72607 5.78233 6.14699 6.15336 6.20185 6.26941 6.36519 6.41593 6.53147 6.60602 6.73110 7.03722 7.04945 7.10430 7.62374 7.68782 7.74642 7.78944 7.97469 8.35346 8.40083 9.02238 9.60685 11.10470 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029872 B = 0.003788 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.117133 B = 7390.449538 C = 7623.342744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.128 3.872 14 N -0.715 5.715 15 C 0.513 3.487 16 O -0.528 6.528 17 C -0.123 4.123 18 H 0.106 0.894 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.092 4.092 22 H 0.132 0.868 23 C 0.477 3.523 24 O -0.497 6.497 25 O -0.515 6.515 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.078 0.922 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 6.462 19.789 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.367 5.367 15 C 0.297 3.703 16 O -0.404 6.404 17 C -0.145 4.145 18 H 0.124 0.876 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.112 4.112 22 H 0.149 0.851 23 C 0.318 3.682 24 O -0.383 6.383 25 O -0.327 6.327 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -5.191 5.565 19.940 21.343 hybrid contribution -0.994 0.425 -1.490 1.841 sum -6.185 5.989 18.450 20.360 Atomic orbital electron populations 1.21756 0.95251 1.01074 1.00302 1.20902 0.95504 0.95860 0.94990 1.21760 1.00548 0.95854 1.00248 1.19091 0.96357 0.95217 0.89480 1.21174 1.31237 1.12079 0.90504 0.92250 1.25015 0.95316 0.95053 0.99093 1.69969 1.36947 1.22976 1.23457 0.86646 0.79181 0.79410 0.83057 1.20764 1.21332 1.19938 1.21648 0.98950 0.95990 0.82875 1.46196 1.52923 1.31837 1.05720 1.19931 0.81297 0.84768 0.84306 1.90719 1.37405 1.25657 1.86605 1.22467 0.96822 1.00539 0.94630 0.87567 1.22740 0.99936 0.98108 0.94761 1.23019 0.93146 0.99518 0.99915 1.22493 0.94381 0.97753 0.96574 0.85050 1.23262 0.78093 0.88040 0.78785 1.90757 1.65741 1.18312 1.63494 1.84505 1.45230 1.47271 1.55731 0.95130 0.91400 0.93507 0.93351 0.91387 0.95245 0.96356 0.96382 0.93021 0.91726 0.91925 0.76538 0.89479 0.88822 0.87266 0.90372 0.73032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 13 C 0.13 2.29 4.56 -4.04 -0.02 2.28 16 14 N -0.72 -10.34 4.96 -60.30 -0.30 -10.64 16 15 C 0.51 7.54 5.93 -10.98 -0.07 7.47 16 16 O -0.53 -9.91 15.23 5.56 0.08 -9.82 16 17 C -0.12 -1.22 4.26 -90.96 -0.39 -1.61 16 18 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 19 C -0.12 -1.01 7.43 -25.92 -0.19 -1.21 16 20 C -0.12 -1.17 7.00 -25.92 -0.18 -1.36 16 21 C -0.09 -0.87 4.21 -90.96 -0.38 -1.25 16 22 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 23 C 0.48 5.93 6.62 36.00 0.24 6.17 16 24 O -0.50 -8.13 16.65 -18.75 -0.31 -8.45 16 25 O -0.52 -5.22 13.42 -39.26 -0.53 -5.75 16 26 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 27 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.40 4.87 6.16 -40.82 -0.25 4.62 16 38 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.11 1.49 6.58 -51.93 -0.34 1.15 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.41 3.01 9.10 45.56 0.41 3.42 16 LS Contribution 340.29 15.07 5.13 5.13 Total: -1.00 -33.89 340.29 -6.81 -40.69 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.65 Total: 4.75 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -0.95 Total: -6.30 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.44 Total: -36.35 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.75 Total: -24.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.89 -6.81 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601983067.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.650 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds