Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00339 * 2 1 4 4 O 1.20825 * 119.99907 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00267 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47045 * 59.99770 * 5 3 2 7 7 C 1.52994 * 109.46989 * 300.00055 * 5 3 2 8 8 C 1.53001 * 109.46965 * 179.97438 * 5 3 2 9 9 H 1.09003 * 109.52017 * 179.91472 * 8 5 3 10 10 C 1.53353 * 109.68156 * 59.75287 * 8 5 3 11 11 C 1.53045 * 109.60341 * 178.74416 * 10 8 5 12 12 C 1.53194 * 109.31389 * 61.37338 * 11 10 8 13 13 N 1.46923 * 108.77327 * 305.36396 * 12 11 10 14 14 C 1.34776 * 120.62970 * 233.58494 * 13 12 11 15 15 O 1.21689 * 120.00329 * 174.78308 * 14 13 12 16 16 C 1.46378 * 119.99861 * 354.78385 * 14 13 12 17 17 H 1.07998 * 119.99844 * 5.00940 * 16 14 13 18 18 C 1.40048 * 119.99682 * 185.00494 * 16 14 13 19 19 N 1.30671 * 120.00214 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99758 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47420 * 60.00085 * 20 18 16 22 22 H 1.48505 * 109.47398 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47020 * 300.00290 * 20 18 16 24 24 C 1.46922 * 118.74131 * 53.60877 * 13 12 11 25 25 H 1.09002 * 109.46545 * 300.00007 * 1 2 3 26 26 H 1.09002 * 109.47330 * 59.99597 * 1 2 3 27 27 H 1.08994 * 109.47260 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47042 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.47783 * 300.00250 * 6 5 3 30 30 H 1.09000 * 109.47163 * 60.00504 * 6 5 3 31 31 H 1.09001 * 109.47355 * 300.00163 * 7 5 3 32 32 H 1.08997 * 109.47228 * 59.99982 * 7 5 3 33 33 H 1.08994 * 109.47678 * 180.02562 * 7 5 3 34 34 H 1.09003 * 109.41638 * 58.71000 * 10 8 5 35 35 H 1.08996 * 109.43576 * 298.78709 * 10 8 5 36 36 H 1.09003 * 109.49640 * 301.41957 * 11 10 8 37 37 H 1.09000 * 109.51983 * 181.34048 * 11 10 8 38 38 H 1.08995 * 109.58418 * 185.57549 * 12 11 10 39 39 H 1.09002 * 109.58198 * 65.14955 * 12 11 10 40 40 H 0.96998 * 119.99786 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.58452 * 66.17564 * 24 13 12 42 42 H 1.08999 * 109.59098 * 186.46176 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.1129 0.5815 -1.2501 7 6 4.1139 0.5810 1.2483 8 6 4.0002 2.7420 -0.0011 9 1 5.0887 2.8000 0.0000 10 6 3.4496 3.4439 1.2463 11 6 3.9105 4.9032 1.2600 12 6 3.3621 5.6194 0.0218 13 7 3.7663 4.8701 -1.1757 14 6 4.4125 5.4860 -2.1854 15 8 4.8259 4.8376 -3.1286 16 6 4.6170 6.9349 -2.1477 17 1 4.3229 7.4992 -1.2751 18 6 5.1941 7.5893 -3.2431 19 7 5.5496 6.9066 -4.2990 20 14 5.4558 9.4383 -3.1946 21 1 6.3495 9.7823 -2.0597 22 1 6.0776 9.8838 -4.4675 23 1 4.1477 10.1189 -3.0185 24 6 3.4524 3.4368 -1.2516 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 5.2014 0.6389 -1.2508 29 1 3.8038 -0.4638 -1.2503 30 1 3.7229 1.0758 -2.1399 31 1 3.7245 1.0749 2.1385 32 1 3.8048 -0.4642 1.2482 33 1 5.2023 0.6384 1.2482 34 1 3.8181 2.9382 2.1389 35 1 2.3603 3.4073 1.2319 36 1 4.9999 4.9407 1.2494 37 1 3.5383 5.3943 2.1591 38 1 3.7677 6.6300 -0.0253 39 1 2.2743 5.6620 0.0763 40 1 5.9497 7.3599 -5.0576 41 1 2.3719 3.3016 -1.3011 42 1 3.9153 3.0079 -2.1403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614014603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -126.081881 kcal Electronic energy + Delta-G solvation = -24014.652764 eV Core-core repulsion = 20573.799571 eV Total energy + Delta-G solvation = -3440.853192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.02610 -38.61367 -36.83497 -35.91559 -34.63507 -32.50923 -31.16110 -29.75393 -27.81128 -27.52115 -26.27350 -24.02635 -23.60924 -22.38835 -20.57597 -19.58036 -18.87487 -17.19610 -16.51462 -16.32984 -15.96263 -15.65915 -14.61694 -14.38962 -14.01271 -13.94959 -13.82615 -13.45056 -13.35563 -13.07703 -12.52371 -12.44828 -12.24872 -12.19876 -12.00199 -11.91524 -11.48475 -11.35501 -11.18118 -10.99908 -10.95321 -10.79489 -10.68247 -10.38885 -10.31662 -10.13130 -9.81226 -9.65154 -9.53287 -8.79547 -7.50017 -7.04780 -6.13958 -4.58079 2.29484 2.73536 3.18549 3.23216 3.25016 4.13012 4.46483 4.61981 4.73845 4.80892 4.85924 5.02713 5.10743 5.15191 5.34343 5.42591 5.50767 5.57358 5.65320 5.71503 5.76576 5.84625 5.89774 6.01517 6.04239 6.07164 6.22960 6.23716 6.31758 6.34390 6.39551 6.65470 6.67267 6.69993 6.77460 7.03394 7.51208 7.74647 7.87298 8.22578 8.46457 9.07851 9.54557 10.64454 10.83595 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.004592 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.426046 B = 6095.470386 C = 6286.478587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.487 6.487 5 C -0.045 4.045 6 C -0.145 4.145 7 C -0.141 4.141 8 C -0.081 4.081 9 H 0.083 0.917 10 C -0.124 4.124 11 C -0.131 4.131 12 C 0.123 3.877 13 N -0.638 5.638 14 C 0.560 3.440 15 O -0.581 6.581 16 C -0.545 4.545 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.770 5.770 20 Si 0.905 3.095 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 C 0.115 3.885 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.268 0.732 41 H 0.063 0.937 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 -12.095 11.678 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.373 6.373 5 C -0.046 4.046 6 C -0.202 4.202 7 C -0.198 4.198 8 C -0.101 4.101 9 H 0.101 0.899 10 C -0.161 4.161 11 C -0.170 4.170 12 C -0.001 4.001 13 N -0.376 5.376 14 C 0.366 3.634 15 O -0.464 6.464 16 C -0.582 4.582 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.398 5.398 20 Si 0.730 3.270 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.009 4.009 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.784 -12.139 10.933 17.331 hybrid contribution -0.150 0.999 0.153 1.021 sum -5.934 -11.140 11.086 16.799 Atomic orbital electron populations 1.23220 0.76934 1.03291 1.02531 1.86507 1.22926 1.33978 1.84309 1.23889 0.91952 0.81078 0.72127 1.90606 1.67054 1.35689 1.43978 1.20607 0.86441 0.98745 0.98839 1.21930 1.02261 1.00143 0.95863 1.21905 1.01969 1.00295 0.95637 1.21571 1.00808 0.89839 0.97877 0.89900 1.21893 1.02501 0.95703 0.96000 1.21911 1.01049 0.95639 0.98410 1.21381 0.97664 0.96570 0.84487 1.48071 1.62899 1.06992 1.19627 1.18223 0.76649 0.88491 0.80049 1.90572 1.53888 1.67008 1.34918 1.20966 1.43247 0.91142 1.02795 0.91002 1.25719 0.93291 0.99445 0.94676 1.70011 1.29749 1.36327 1.03751 0.86476 0.79152 0.83326 0.78049 1.19279 1.20598 1.19296 1.21488 0.99598 0.83715 0.96084 0.92108 0.91903 0.88442 0.90724 0.91612 0.91288 0.91884 0.91560 0.90923 0.93060 0.89996 0.92106 0.92164 0.89274 0.94071 0.92152 0.91936 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.45 10.37 -39.26 -0.41 -4.85 16 3 C 0.47 6.73 5.95 36.01 0.21 6.95 16 4 O -0.49 -8.29 11.11 -18.75 -0.21 -8.50 16 5 C -0.04 -0.60 0.53 -155.67 -0.08 -0.68 16 6 C -0.14 -1.86 8.06 37.16 0.30 -1.56 16 7 C -0.14 -1.48 8.06 37.15 0.30 -1.18 16 8 C -0.08 -1.35 1.68 -90.34 -0.15 -1.50 16 9 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 10 C -0.12 -1.92 4.55 -26.53 -0.12 -2.04 16 11 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 12 C 0.12 2.49 6.31 -3.71 -0.02 2.47 16 13 N -0.64 -15.39 2.97 -174.44 -0.52 -15.91 16 14 C 0.56 16.46 7.62 -12.99 -0.10 16.37 16 15 O -0.58 -19.17 14.45 5.20 0.08 -19.09 16 16 C -0.54 -15.65 8.86 -35.63 -0.32 -15.97 16 17 H 0.07 1.89 5.69 -52.49 -0.30 1.59 16 18 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 19 N -0.77 -23.39 11.84 55.55 0.66 -22.74 16 20 Si 0.91 20.41 29.56 -169.99 -5.02 15.39 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C 0.12 2.43 4.94 -3.71 -0.02 2.41 16 25 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 30 H 0.07 1.02 6.56 -51.93 -0.34 0.68 16 31 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 32 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.67 6.39 -51.93 -0.33 0.34 16 35 H 0.08 1.37 5.55 -51.93 -0.29 1.08 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.85 5.37 -51.93 -0.28 1.58 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.27 7.40 8.29 -40.82 -0.34 7.07 16 41 H 0.06 1.35 5.44 -51.93 -0.28 1.07 16 42 H 0.08 1.83 5.60 -51.93 -0.29 1.54 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -35.38 325.14 -5.94 -41.32 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.23 Total: 2.74 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 0.81 Total: 6.73 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.14 Total: -38.65 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.54 Total: -32.44 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.38 -5.94 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614014603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.757 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds