Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00049 * 2 1 4 4 C 1.50695 * 109.47298 * 90.00019 * 3 2 1 5 5 H 1.08009 * 119.99748 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00331 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99866 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00126 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46841 * 120.00194 * 8 6 4 11 11 H 1.48498 * 109.47234 * 239.99980 * 8 6 4 12 12 C 1.34782 * 119.99885 * 179.97438 * 2 1 3 13 13 O 1.21278 * 119.99916 * 184.99639 * 12 2 1 14 14 C 1.50701 * 120.00017 * 5.00074 * 12 2 1 15 15 C 1.50701 * 115.55100 * 65.60211 * 14 12 2 16 16 O 1.20818 * 120.00216 * 246.37940 * 15 14 12 17 17 O 1.34229 * 119.99627 * 66.37710 * 15 14 12 18 18 C 1.52999 * 117.49582 * 279.93823 * 14 12 2 19 19 C 1.52993 * 117.50049 * 359.97438 * 18 14 12 20 20 C 1.52998 * 117.49927 * 145.02016 * 18 14 12 21 21 C 1.52993 * 117.49722 * 211.27783 * 14 12 2 22 22 C 1.53004 * 117.49802 * 214.97637 * 21 14 12 23 23 C 1.52999 * 117.50088 * 359.97080 * 21 14 12 24 24 H 1.09002 * 109.47107 * 85.71199 * 1 2 3 25 25 H 1.08998 * 109.47689 * 205.71169 * 1 2 3 26 26 H 1.09004 * 109.47217 * 325.71032 * 1 2 3 27 27 H 1.09010 * 109.46671 * 209.99800 * 3 2 1 28 28 H 1.08994 * 109.47008 * 329.99789 * 3 2 1 29 29 H 0.97005 * 120.00435 * 180.02562 * 7 6 4 30 30 H 0.96706 * 117.00317 * 179.97438 * 17 15 14 31 31 H 1.08996 * 109.47476 * 111.39309 * 19 18 14 32 32 H 1.09009 * 109.47189 * 231.39547 * 19 18 14 33 33 H 1.09002 * 109.47242 * 351.39010 * 19 18 14 34 34 H 1.09010 * 109.47097 * 55.55871 * 20 18 14 35 35 H 1.08994 * 109.47252 * 175.55983 * 20 18 14 36 36 H 1.08997 * 109.47210 * 295.56672 * 20 18 14 37 37 H 1.09005 * 109.46800 * 116.04754 * 22 21 14 38 38 H 1.08997 * 109.47485 * 236.04934 * 22 21 14 39 39 H 1.09007 * 109.46767 * 356.05247 * 22 21 14 40 40 H 1.08999 * 109.46863 * 53.04431 * 23 21 14 41 41 H 1.08999 * 109.46891 * 173.03794 * 23 21 14 42 42 H 1.08998 * 109.47389 * 293.03912 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6727 7 7 3.5551 3.6170 0.6731 8 14 3.4376 3.4170 3.4339 9 1 2.8597 2.4171 4.3673 10 1 4.9001 3.5246 3.6679 11 1 2.8006 4.7381 3.6666 12 6 2.1388 -1.1673 0.0005 13 8 3.3482 -1.1692 0.0920 14 6 1.3896 -2.4699 -0.1127 15 6 0.6745 -2.6970 -1.4196 16 8 -0.5326 -2.7393 -1.4484 17 8 1.3787 -2.8523 -2.5517 18 6 0.7351 -3.0208 1.1558 19 6 0.8917 -2.2074 2.4420 20 6 -0.5951 -3.7607 1.0002 21 6 1.9878 -3.6919 0.5870 22 6 1.8137 -5.0512 -0.0935 23 6 3.3012 -3.4981 1.3475 24 1 -0.3633 0.0768 -1.0248 25 1 -0.3634 -0.9259 0.4458 26 1 -0.3634 0.8491 0.5790 27 1 3.1500 1.1383 -0.5139 28 1 1.6084 2.0283 -0.5138 29 1 4.0326 4.4426 0.8503 30 1 0.8760 -2.9959 -3.3653 31 1 -0.0738 -1.7906 2.7283 32 1 1.2587 -2.8546 3.2388 33 1 1.6022 -1.3977 2.2756 34 1 -0.4756 -4.5771 0.2877 35 1 -0.9022 -4.1630 1.9655 36 1 -1.3550 -3.0693 0.6362 37 1 2.7908 -5.4448 -0.3740 38 1 1.3275 -5.7426 0.5948 39 1 1.1990 -4.9346 -0.9861 40 1 3.1956 -2.6715 2.0500 41 1 3.5429 -4.4101 1.8933 42 1 4.1006 -3.2748 0.6410 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688561979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = -101.760308 kcal Electronic energy + Delta-G solvation = -24615.654469 eV Core-core repulsion = 21175.855939 eV Total energy + Delta-G solvation = -3439.798530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42796 -39.16124 -37.57574 -36.05205 -34.84349 -32.61569 -31.10553 -29.22487 -28.73972 -27.60160 -26.13959 -25.67133 -23.75898 -23.19062 -20.63197 -18.75129 -18.02500 -17.49882 -16.79947 -16.59568 -16.04679 -15.31251 -14.88820 -14.78431 -14.40777 -14.11766 -13.70221 -13.30449 -13.27201 -12.79043 -12.36178 -12.31786 -12.28448 -12.21679 -12.11242 -11.99136 -11.74822 -11.70699 -11.66502 -11.45141 -11.21078 -10.88170 -10.74890 -10.65191 -10.61723 -10.15162 -9.80915 -9.61607 -9.51653 -8.81548 -8.45195 -7.67695 -6.05593 -4.10280 2.11618 2.85878 3.07300 3.28968 3.36430 3.39563 3.57244 3.93491 4.41969 4.51443 4.64708 4.80112 5.03930 5.09652 5.19955 5.29461 5.43073 5.50175 5.58688 5.69447 5.79186 5.85967 5.87224 5.95310 5.98506 6.00617 6.04399 6.10841 6.18376 6.26783 6.37131 6.43360 6.51526 6.70711 7.01816 7.39381 7.49871 7.89880 7.91958 8.20574 8.34221 8.85524 9.01520 9.54664 11.02673 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021712 B = 0.005923 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.294469 B = 4725.877460 C = 5025.978286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.593 5.593 3 C 0.246 3.754 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.551 3.449 13 O -0.517 6.517 14 C -0.161 4.161 15 C 0.531 3.469 16 O -0.504 6.504 17 O -0.505 6.505 18 C -0.071 4.071 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.068 4.068 22 C -0.116 4.116 23 C -0.114 4.114 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.263 0.737 30 H 0.407 0.593 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 -15.808 -1.465 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.324 5.324 3 C 0.127 3.873 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.335 3.665 13 O -0.393 6.393 14 C -0.165 4.165 15 C 0.373 3.627 16 O -0.392 6.392 17 O -0.316 6.316 18 C -0.072 4.072 19 C -0.183 4.183 20 C -0.175 4.175 21 C -0.068 4.068 22 C -0.173 4.173 23 C -0.171 4.171 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.882 -15.537 -1.112 17.029 hybrid contribution -0.283 0.516 0.147 0.607 sum -7.165 -15.021 -0.964 16.670 Atomic orbital electron populations 1.21765 0.81121 1.03015 1.00717 1.48144 1.06347 1.07358 1.70591 1.19342 0.92386 0.77786 0.97763 1.21426 1.36390 1.06249 0.92125 0.92278 1.24932 0.95375 0.96386 0.97405 1.69941 1.38370 1.14384 1.30674 0.86450 0.78076 0.78353 0.84599 1.19759 1.20877 1.20985 1.18571 0.86974 0.82696 0.78249 1.90682 1.13294 1.86034 1.49305 1.21596 1.06358 0.98417 0.90162 1.21766 0.85238 0.71345 0.84378 1.90678 1.15093 1.46779 1.86657 1.84627 1.44967 1.83529 1.18458 1.21980 0.94798 0.99024 0.91362 1.21516 1.03110 0.99650 0.94000 1.21492 0.94427 0.99985 1.01559 1.21906 0.95804 0.90628 0.98508 1.21421 1.02390 0.94128 0.99362 1.21432 0.94287 1.01297 1.00086 0.94093 0.91404 0.90705 0.93859 0.94855 0.92755 0.73463 0.91460 0.91264 0.90577 0.92293 0.91897 0.90479 0.91138 0.91217 0.93028 0.91266 0.92584 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 9.50 59.84 0.57 1.97 16 2 N -0.59 -12.98 2.85 -182.95 -0.52 -13.50 16 3 C 0.25 6.47 5.14 -5.19 -0.03 6.44 16 4 C -0.52 -14.65 9.38 -34.44 -0.32 -14.97 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.55 11.72 4.71 -10.98 -0.05 11.67 16 13 O -0.52 -12.74 13.88 5.56 0.08 -12.66 16 14 C -0.16 -2.69 1.30 -156.82 -0.20 -2.89 16 15 C 0.53 8.22 4.60 36.01 0.17 8.38 16 16 O -0.50 -7.86 14.54 -18.74 -0.27 -8.14 16 17 O -0.50 -6.87 13.37 -39.26 -0.52 -7.40 16 18 C -0.07 -1.01 1.66 -154.47 -0.26 -1.26 16 19 C -0.13 -1.83 7.67 37.15 0.28 -1.55 16 20 C -0.12 -1.41 7.90 37.16 0.29 -1.11 16 21 C -0.07 -0.97 2.70 -154.47 -0.42 -1.39 16 22 C -0.12 -1.32 8.25 37.16 0.31 -1.01 16 23 C -0.11 -1.72 7.86 37.16 0.29 -1.43 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 1.11 4.90 -51.93 -0.25 0.86 16 26 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 27 H 0.04 1.27 7.50 -51.92 -0.39 0.89 16 28 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.41 3.31 9.10 45.56 0.41 3.72 16 31 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.07 0.87 8.11 -51.92 -0.42 0.45 16 33 H 0.08 1.40 5.75 -51.93 -0.30 1.10 16 34 H 0.06 0.68 5.83 -51.92 -0.30 0.38 16 35 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 36 H 0.08 0.99 6.98 -51.93 -0.36 0.63 16 37 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 39 H 0.05 0.60 5.93 -51.92 -0.31 0.29 16 40 H 0.07 1.17 5.69 -51.93 -0.30 0.87 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.33 7.25 -51.93 -0.38 0.96 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -33.12 332.64 -5.47 -38.59 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.49 Total: 2.70 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 0.54 Total: 4.48 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.22 Total: -39.26 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.72 Total: -28.19 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.12 -5.47 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688561979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.175 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds