Wall clock time and date at job start Tue Mar 31 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.48770 * 110.99947 * 285.53149 * 12 11 10 14 14 C 1.55471 * 103.62132 * 199.31862 * 13 12 11 15 15 H 1.09000 * 109.80906 * 147.28059 * 14 13 12 16 16 C 1.51694 * 107.61723 * 266.89767 * 14 13 12 17 17 O 1.42071 * 112.95988 * 147.11543 * 16 14 13 18 18 C 1.43394 * 112.42663 * 300.76965 * 17 16 14 19 19 C 1.52638 * 107.41203 * 70.03731 * 18 17 16 20 20 C 1.49926 * 112.61374 * 306.74233 * 19 18 17 21 21 C 1.50703 * 105.82928 * 148.85066 * 20 19 18 22 22 O 1.20832 * 119.99602 * 238.73513 * 21 20 19 23 23 O 1.34222 * 120.00421 * 58.72753 * 21 20 19 24 24 C 1.48703 * 110.99963 * 169.99689 * 12 11 10 25 25 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 1.09005 * 110.59328 * 317.85043 * 13 12 11 33 33 H 1.08992 * 110.59278 * 80.78264 * 13 12 11 34 34 H 1.09000 * 108.78397 * 268.01252 * 16 14 13 35 35 H 1.08993 * 108.78737 * 26.32816 * 16 14 13 36 36 H 1.09003 * 109.86706 * 189.51373 * 18 17 16 37 37 H 1.09001 * 109.87089 * 310.48650 * 18 17 16 38 38 H 1.08994 * 108.85911 * 185.92848 * 19 18 17 39 39 H 1.09003 * 108.84894 * 67.54303 * 19 18 17 40 40 H 0.96699 * 117.00473 * 180.02562 * 23 21 20 41 41 H 1.09003 * 110.38447 * 274.48077 * 24 12 11 42 42 H 1.08994 * 110.38581 * 36.74659 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 7 6.0411 -4.0216 0.0220 13 6 5.8620 -4.6463 1.3602 14 6 6.8464 -5.8495 1.3373 15 1 7.2416 -6.0226 2.3383 16 6 6.0720 -7.0673 0.8699 17 8 6.8659 -7.9732 0.1164 18 6 7.4243 -7.3662 -1.0565 19 6 8.4865 -6.3720 -0.5947 20 6 7.9622 -5.3961 0.4156 21 6 9.1312 -5.0564 1.3041 22 8 9.0674 -5.2651 2.4925 23 8 10.2431 -4.5221 0.7753 24 6 7.5088 -4.0686 -0.2123 25 1 -0.4849 0.8400 0.0004 26 1 3.8786 -0.6821 -0.8838 27 1 3.8711 -0.6785 0.8962 28 1 3.6545 -3.1486 0.9003 29 1 3.6618 -3.1522 -0.8796 30 1 5.9188 -2.1245 -0.8715 31 1 5.9108 -2.1211 0.9084 32 1 6.1320 -3.9451 2.1499 33 1 4.8364 -4.9924 1.4876 34 1 5.6772 -7.5883 1.7422 35 1 5.2374 -6.7367 0.2518 36 1 7.8805 -8.1293 -1.6871 37 1 6.6441 -6.8452 -1.6114 38 1 8.8527 -5.8202 -1.4603 39 1 9.3170 -6.9234 -0.1538 40 1 10.9666 -4.3215 1.3848 41 1 7.7231 -4.0614 -1.2811 42 1 7.9988 -3.2276 0.2782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715870148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:34 Heat of formation + Delta-G solvation = -133.123079 kcal Electronic energy + Delta-G solvation = -23318.621140 eV Core-core repulsion = 19877.462618 eV Total energy + Delta-G solvation = -3441.158522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.83571 -39.42285 -37.62515 -36.50315 -34.75356 -33.28240 -32.30285 -30.97890 -28.64950 -27.07765 -25.48012 -24.01156 -22.84503 -22.40928 -21.14263 -20.12929 -19.04223 -18.26221 -17.61292 -16.73351 -16.65215 -15.86547 -15.74836 -15.42247 -15.11896 -14.54297 -14.30536 -14.15365 -13.84800 -13.27969 -13.21579 -12.82703 -12.61425 -12.48290 -12.37039 -12.01378 -11.87114 -11.58161 -11.48378 -11.35347 -11.00248 -10.98794 -10.79501 -10.64136 -10.34372 -9.93431 -9.72412 -9.69589 -9.60159 -9.18338 -8.53931 -8.48671 -6.03986 -4.01775 1.88623 2.59217 3.29879 3.37325 3.40481 3.70895 3.95453 4.04318 4.22824 4.35646 4.44959 4.65535 4.83214 4.92406 5.05849 5.21744 5.22414 5.25472 5.29821 5.37970 5.47224 5.52385 5.57907 5.59820 5.72647 5.73710 5.77585 5.93628 5.96763 6.09735 6.18853 6.44229 6.48844 6.76171 6.94202 6.96658 7.08456 7.32088 7.44152 7.53762 7.79993 8.54973 9.01580 9.58617 11.09608 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.003780 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.044650 B = 7406.024737 C = 7973.601466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.094 4.094 11 C 0.041 3.959 12 N -0.505 5.505 13 C 0.035 3.965 14 C -0.126 4.126 15 H 0.113 0.887 16 C 0.073 3.927 17 O -0.377 6.377 18 C 0.060 3.940 19 C -0.133 4.133 20 C -0.027 4.027 21 C 0.477 3.523 22 O -0.510 6.510 23 O -0.512 6.512 24 C 0.043 3.957 25 H 0.263 0.737 26 H 0.011 0.989 27 H 0.012 0.988 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.409 0.591 41 H 0.096 0.904 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.943 -12.834 -0.568 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.132 4.132 11 C -0.086 4.086 12 N -0.229 5.229 13 C -0.093 4.093 14 C -0.145 4.145 15 H 0.131 0.869 16 C -0.004 4.004 17 O -0.295 6.295 18 C -0.016 4.016 19 C -0.171 4.171 20 C -0.029 4.029 21 C 0.319 3.681 22 O -0.398 6.398 23 O -0.323 6.323 24 C -0.086 4.086 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.267 0.733 41 H 0.115 0.885 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 20.179 -13.309 -0.862 24.188 hybrid contribution 1.378 2.043 1.100 2.699 sum 21.557 -11.266 0.238 24.325 Atomic orbital electron populations 1.69916 1.06290 1.26835 1.51282 1.25038 0.94720 0.99136 0.94637 0.86778 0.80296 0.83703 0.78470 1.20287 1.21418 1.19166 1.21135 0.89453 0.94459 1.50588 0.90999 1.19558 0.97248 0.92291 0.96056 1.21402 0.90431 0.99577 1.01747 1.22534 0.98705 0.86897 1.00508 1.65603 1.11143 1.19035 1.27071 1.23609 1.00224 0.94714 0.90760 1.22159 0.94468 0.97096 1.00732 0.86942 1.22208 0.92551 0.89286 0.96373 1.88026 1.68026 1.36227 1.37225 1.22618 0.95373 0.95780 0.87849 1.21405 0.99641 0.97417 0.98621 1.20087 0.90272 0.97805 0.94725 1.23873 0.83616 0.72603 0.88048 1.90679 1.81389 1.50185 1.17515 1.84546 1.26329 1.75078 1.46346 1.23272 0.90153 0.93334 1.01811 0.92766 0.97091 0.96930 0.92877 0.91859 0.90971 0.94876 0.93225 0.88581 0.88771 0.91733 0.88398 0.91357 0.89255 0.90979 0.73250 0.88548 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.09 -1.82 5.27 -26.74 -0.14 -1.96 16 11 C 0.04 0.65 4.81 -3.83 -0.02 0.63 16 12 N -0.50 -6.80 5.34 -229.39 -1.22 -8.02 16 13 C 0.03 0.45 5.21 -1.47 -0.01 0.44 16 14 C -0.13 -1.45 2.88 -90.65 -0.26 -1.71 16 15 H 0.11 1.42 6.01 -51.93 -0.31 1.11 16 16 C 0.07 0.79 6.06 36.50 0.22 1.01 16 17 O -0.38 -4.31 10.81 -35.23 -0.38 -4.69 16 18 C 0.06 0.54 6.93 36.97 0.26 0.80 16 19 C -0.13 -1.16 4.93 -28.44 -0.14 -1.30 16 20 C -0.03 -0.29 0.84 -157.50 -0.13 -0.42 16 21 C 0.48 5.25 5.85 36.01 0.21 5.47 16 22 O -0.51 -7.04 15.59 -18.76 -0.29 -7.33 16 23 O -0.51 -4.15 13.03 -39.24 -0.51 -4.66 16 24 C 0.04 0.48 5.59 -2.46 -0.01 0.46 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.01 0.25 7.58 -51.93 -0.39 -0.14 16 27 H 0.01 0.30 7.19 -51.93 -0.37 -0.08 16 28 H 0.05 1.04 7.43 -51.93 -0.39 0.65 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.03 0.52 7.80 -51.93 -0.40 0.12 16 32 H 0.05 0.67 7.80 -51.93 -0.41 0.27 16 33 H 0.10 1.23 7.29 -51.93 -0.38 0.85 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.73 7.46 -51.93 -0.39 0.34 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 38 H 0.09 0.64 7.44 -51.93 -0.39 0.25 16 39 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 40 H 0.41 1.66 9.10 45.56 0.41 2.08 16 41 H 0.10 0.96 7.43 -51.93 -0.39 0.57 16 42 H 0.05 0.59 7.30 -51.93 -0.38 0.21 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -33.39 328.72 -7.78 -41.18 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.86 Total: -0.95 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.57 Total: -10.34 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.45 Total: -35.27 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.18 Total: -16.68 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.39 -7.78 -41.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715870148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.947 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds