Wall clock time and date at job start Tue Mar 31 2020 05:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99950 * 2 1 4 4 H 1.48497 * 109.46982 * 239.99517 * 3 2 1 5 5 H 1.48504 * 109.47229 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47319 * 119.99807 * 3 2 1 7 7 C 1.37871 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00259 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47239 * 179.97438 * 9 7 2 11 11 O 1.45206 * 109.46887 * 180.02562 * 10 9 7 12 12 C 1.34229 * 116.99724 * 180.02562 * 11 10 9 13 13 O 1.20821 * 119.99901 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99734 * 179.97438 * 12 11 10 15 15 N 1.46496 * 109.47317 * 180.02562 * 14 12 11 16 16 C 1.34777 * 120.00266 * 180.02562 * 15 14 12 17 17 O 1.21274 * 120.00135 * 0.27234 * 16 15 14 18 18 C 1.50706 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.52999 * 109.46573 * 179.97438 * 18 16 15 20 20 C 1.54266 * 110.03792 * 292.90549 * 19 18 16 21 21 C 1.54961 * 104.16181 * 217.14014 * 20 19 18 22 22 C 1.54885 * 102.77932 * 37.88909 * 21 20 19 23 23 C 1.53875 * 110.03091 * 175.69140 * 19 18 16 24 24 H 0.97003 * 119.99953 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46539 * 59.99751 * 9 7 2 26 26 H 1.08995 * 109.47069 * 300.00366 * 9 7 2 27 27 H 1.08997 * 109.46864 * 60.00517 * 10 9 7 28 28 H 1.08995 * 109.47593 * 300.00295 * 10 9 7 29 29 H 1.09004 * 109.47103 * 59.99845 * 14 12 11 30 30 H 1.09000 * 109.47247 * 299.99723 * 14 12 11 31 31 H 0.96999 * 119.99691 * 359.97438 * 15 14 12 32 32 H 1.09000 * 109.47161 * 299.99737 * 18 16 15 33 33 H 1.09001 * 109.46740 * 59.99879 * 18 16 15 34 34 H 1.08999 * 110.01809 * 54.30201 * 19 18 16 35 35 H 1.09000 * 110.48113 * 335.78905 * 20 19 18 36 36 H 1.09008 * 110.48152 * 98.42758 * 20 19 18 37 37 H 1.08994 * 110.72031 * 279.57006 * 21 20 19 38 38 H 1.09004 * 110.91930 * 156.30021 * 21 20 19 39 39 H 1.08998 * 110.48384 * 203.40508 * 22 21 20 40 40 H 1.09003 * 110.59736 * 80.81343 * 22 21 20 41 41 H 1.09005 * 110.03670 * 238.57201 * 23 19 18 42 42 H 1.09003 * 110.03297 * 359.94934 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5192 -4.9196 -0.0001 12 6 2.2503 -6.0453 0.0004 13 8 3.4569 -5.9820 0.0008 14 6 1.5661 -7.3880 0.0004 15 7 2.5750 -8.4502 0.0015 16 6 2.1929 -9.7427 0.0012 17 8 1.0138 -10.0264 -0.0050 18 6 3.2308 -10.8353 0.0018 19 6 2.5362 -12.1985 0.0019 20 6 1.7932 -12.4130 1.3368 21 6 1.9865 -13.9202 1.6403 22 6 3.4380 -14.1815 1.1674 23 6 3.5813 -13.3226 -0.1060 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.8718 -3.6043 0.8906 28 1 2.8720 -3.6044 -0.8894 29 1 0.9436 -7.4786 -0.8898 30 1 0.9431 -7.4783 0.8902 31 1 3.5181 -8.2233 0.0018 32 1 3.8542 -10.7448 -0.8878 33 1 3.8530 -10.7448 0.8922 34 1 1.8346 -12.2598 -0.8300 35 1 2.2396 -11.8051 2.1237 36 1 0.7345 -12.1780 1.2260 37 1 1.2798 -14.5223 1.0693 38 1 1.8863 -14.1182 2.7076 39 1 3.5789 -15.2368 0.9337 40 1 4.1521 -13.8610 1.9260 41 1 3.3865 -13.9301 -0.9899 42 1 4.5834 -12.8970 -0.1594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725989641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:10 Heat of formation + Delta-G solvation = -157.412767 kcal Electronic energy + Delta-G solvation = -21325.478993 eV Core-core repulsion = 17883.267191 eV Total energy + Delta-G solvation = -3442.211802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54852 -39.81190 -38.07326 -36.44919 -34.59360 -33.41006 -31.98277 -30.49597 -28.94438 -28.60087 -25.86719 -24.79856 -21.50016 -21.03998 -20.78866 -20.65705 -19.79872 -18.02681 -17.13873 -16.55403 -16.39114 -16.14393 -15.92415 -15.57095 -15.14018 -14.87965 -14.49055 -14.11600 -13.65897 -13.61059 -13.37935 -12.74056 -12.62739 -12.39803 -12.24461 -11.53911 -11.38300 -11.32372 -11.24654 -11.13223 -11.06364 -10.89346 -10.81291 -10.79126 -10.71058 -10.44901 -10.04764 -9.76457 -9.70163 -9.37138 -9.36930 -8.48326 -6.14202 -4.19313 2.29952 2.44777 2.53365 3.27261 3.29840 3.32052 3.37104 4.23609 4.30045 4.34810 4.40910 4.65476 4.87455 4.95081 4.98452 5.16560 5.18064 5.22002 5.22223 5.28810 5.35132 5.38843 5.48257 5.53655 5.62538 5.72987 5.82501 5.94346 5.98926 6.00827 6.03251 6.10913 6.20155 6.54140 6.79834 7.25454 7.48415 7.55906 7.78820 7.95364 8.03058 8.18034 8.85814 9.45317 10.97110 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.061164 B = 0.002125 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.675900 B =13172.051042 C =13408.341689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.350 6.350 12 C 0.453 3.547 13 O -0.518 6.518 14 C 0.124 3.876 15 N -0.724 5.724 16 C 0.516 3.484 17 O -0.535 6.535 18 C -0.133 4.133 19 C -0.077 4.077 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.122 4.122 24 H 0.265 0.735 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.412 0.588 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 -26.404 1.006 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.265 6.265 12 C 0.296 3.704 13 O -0.408 6.408 14 C -0.001 4.001 15 N -0.381 5.381 16 C 0.302 3.698 17 O -0.412 6.412 18 C -0.173 4.173 19 C -0.096 4.096 20 C -0.152 4.152 21 C -0.165 4.165 22 C -0.163 4.163 23 C -0.160 4.160 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.249 0.751 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.744 -26.381 0.997 27.017 hybrid contribution 1.072 1.281 -0.023 1.671 sum 6.816 -25.100 0.974 26.027 Atomic orbital electron populations 1.69963 1.06088 1.27186 1.49453 1.24987 0.94941 0.99421 0.94797 0.86513 0.79469 0.82418 0.78774 1.20067 1.21085 1.20058 1.20918 0.93123 0.90060 1.52608 0.92292 1.19187 0.94189 0.88911 0.99038 1.23738 0.96468 0.78328 1.01134 1.86526 1.42216 1.15705 1.82083 1.23335 0.86530 0.87661 0.72862 1.90618 1.15707 1.88062 1.46425 1.20637 0.91150 0.82023 1.06260 1.45856 1.10941 1.05115 1.76210 1.20742 0.90513 0.82898 0.75597 1.90713 1.18553 1.82936 1.48973 1.21858 0.97596 0.93221 1.04624 1.21551 0.96679 0.91808 0.99562 1.22419 1.01388 0.95446 0.95971 1.22537 0.96483 0.96768 1.00739 1.22358 0.97149 0.99461 0.97319 1.22238 0.98893 0.96611 0.98257 0.92584 0.95237 0.95229 0.92073 0.92077 0.87150 0.87166 0.75085 0.88676 0.88625 0.90105 0.92039 0.90673 0.91610 0.91774 0.91910 0.91720 0.91671 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.61 5.35 -27.88 -0.15 0.46 16 10 C 0.08 1.62 5.40 37.16 0.20 1.82 16 11 O -0.35 -6.63 10.22 -39.26 -0.40 -7.03 16 12 C 0.45 7.21 8.03 36.01 0.29 7.50 16 13 O -0.52 -9.09 15.42 -18.75 -0.29 -9.38 16 14 C 0.12 1.52 6.27 -5.20 -0.03 1.49 16 15 N -0.72 -7.83 5.53 -61.47 -0.34 -8.17 16 16 C 0.52 5.54 7.61 -10.98 -0.08 5.45 16 17 O -0.54 -7.43 14.79 5.56 0.08 -7.34 16 18 C -0.13 -0.98 4.83 -27.88 -0.13 -1.12 16 19 C -0.08 -0.60 2.55 -89.50 -0.23 -0.83 16 20 C -0.11 -0.98 5.40 -25.03 -0.14 -1.11 16 21 C -0.13 -0.89 6.91 -24.70 -0.17 -1.06 16 22 C -0.13 -0.77 6.83 -25.07 -0.17 -0.94 16 23 C -0.12 -0.76 6.46 -25.61 -0.17 -0.92 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 28 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 29 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.41 4.11 7.44 -40.82 -0.30 3.81 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.58 8.02 -51.93 -0.42 0.16 16 34 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 35 H 0.06 0.53 7.77 -51.93 -0.40 0.12 16 36 H 0.07 0.77 7.63 -51.92 -0.40 0.38 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -31.44 350.52 -8.09 -39.52 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.94 Total: -1.05 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.19 Total: -2.61 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.40 Total: -33.53 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.61 Total: -23.76 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.44 -8.09 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725989641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.891 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds