Wall clock time and date at job start Tue Mar 31 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34230 * 117.00123 * 2 1 4 4 O 1.20824 * 120.00088 * 359.72405 * 3 2 1 5 5 C 1.50700 * 120.00289 * 180.02562 * 3 2 1 6 6 H 1.09005 * 115.55128 * 28.74213 * 5 3 2 7 7 C 1.53003 * 117.50223 * 243.03858 * 5 3 2 8 8 C 1.52995 * 117.50141 * 174.41212 * 5 3 2 9 9 H 1.09000 * 117.50075 * 214.97511 * 8 5 3 10 10 C 1.50697 * 117.49723 * 359.97438 * 8 5 3 11 11 O 1.21277 * 120.00406 * 60.74008 * 10 8 5 12 12 N 1.34779 * 119.99754 * 240.73496 * 10 8 5 13 13 C 1.46503 * 119.99992 * 185.52449 * 12 10 8 14 14 C 1.50698 * 109.47073 * 90.00408 * 13 12 10 15 15 H 1.07995 * 120.00168 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00084 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99858 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00096 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47147 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46929 * 120.00120 * 18 16 14 21 21 H 1.48502 * 109.47155 * 239.99912 * 18 16 14 22 22 C 1.46500 * 120.00002 * 5.53075 * 12 10 8 23 23 C 1.52995 * 109.47314 * 97.05312 * 22 12 10 24 24 C 1.53002 * 109.47414 * 174.03394 * 23 22 12 25 25 C 1.52994 * 109.47181 * 294.03549 * 23 22 12 26 26 H 1.09005 * 109.47064 * 299.99805 * 1 2 3 27 27 H 1.08995 * 109.47344 * 59.99870 * 1 2 3 28 28 H 1.09001 * 109.47296 * 180.02562 * 1 2 3 29 29 H 1.09005 * 117.49151 * 359.97438 * 7 5 3 30 30 H 1.08992 * 117.50177 * 145.01877 * 7 5 3 31 31 H 1.09004 * 109.47067 * 210.00517 * 13 12 10 32 32 H 1.09002 * 109.46831 * 330.00144 * 13 12 10 33 33 H 0.97007 * 120.00034 * 180.02562 * 17 16 14 34 34 H 1.09006 * 109.46978 * 217.05442 * 22 12 10 35 35 H 1.08997 * 109.47089 * 337.05320 * 22 12 10 36 36 H 1.09009 * 109.47097 * 54.03752 * 23 22 12 37 37 H 1.09001 * 109.46374 * 60.00004 * 24 23 22 38 38 H 1.08994 * 109.47450 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.47080 * 300.00343 * 24 23 22 40 40 H 1.08998 * 109.47722 * 305.70200 * 25 23 22 41 41 H 1.09008 * 109.47287 * 65.69892 * 25 23 22 42 42 H 1.09005 * 109.47254 * 185.69288 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 1 4.0808 0.4385 -0.4739 7 6 4.2401 1.9261 1.2089 8 6 4.2010 2.6607 -0.1327 9 1 5.1333 2.7360 -0.6925 10 6 3.2735 3.8423 -0.2529 11 8 2.4909 4.0922 0.6393 12 7 3.3136 4.6214 -1.3519 13 6 2.4998 5.8378 -1.4176 14 6 3.2891 7.0002 -0.8728 15 1 4.2960 6.8481 -0.5132 16 6 2.7254 8.2579 -0.8324 17 7 1.4991 8.4431 -1.2699 18 14 3.7036 9.6986 -0.1565 19 1 5.0467 9.2291 0.2683 20 1 3.8511 10.7345 -1.2102 21 1 2.9901 10.2774 1.0102 22 6 4.1709 4.2518 -2.4809 23 6 3.3391 3.5163 -3.5335 24 6 4.1967 3.2617 -4.7747 25 6 2.8594 2.1805 -2.9624 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.5948 2.2978 2.0048 30 1 5.1979 1.5182 1.5316 31 1 2.2276 6.0374 -2.4540 32 1 1.5956 5.7025 -0.8240 33 1 1.1026 9.3280 -1.2418 34 1 4.6003 5.1519 -2.9210 35 1 4.9719 3.6007 -2.1310 36 1 2.4772 4.1254 -3.8062 37 1 5.0586 2.6526 -4.5020 38 1 3.6043 2.7373 -5.5245 39 1 4.5385 4.2134 -5.1816 40 1 3.7152 1.6133 -2.5967 41 1 2.1673 2.3643 -2.1404 42 1 2.3535 1.6122 -3.7430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727376045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:11 Heat of formation + Delta-G solvation = -93.499342 kcal Electronic energy + Delta-G solvation = -24037.159400 eV Core-core repulsion = 20597.719092 eV Total energy + Delta-G solvation = -3439.440307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70587 -39.07239 -36.82637 -35.99037 -35.46114 -33.46540 -32.15656 -28.24278 -27.71937 -26.95189 -25.60332 -24.70008 -23.88839 -21.76424 -20.49313 -20.00201 -18.41008 -17.61499 -16.69034 -16.33660 -16.18440 -15.73924 -15.09581 -14.80123 -14.39778 -14.30322 -13.94878 -13.54764 -13.17567 -13.02985 -12.78655 -12.40044 -12.13256 -12.02179 -11.93147 -11.71970 -11.58722 -11.28009 -10.93967 -10.85265 -10.71185 -10.69153 -10.54538 -10.42880 -10.37999 -10.28134 -10.03787 -9.97048 -9.47043 -8.71065 -8.36575 -7.43179 -5.96753 -4.01395 2.26124 2.70870 3.33267 3.34936 3.40875 3.44944 3.92958 4.17950 4.50139 4.74675 4.77105 4.86623 5.03431 5.12370 5.15980 5.24200 5.24408 5.31098 5.37250 5.44697 5.51692 5.65393 5.74510 5.77793 5.83108 5.94018 6.00926 6.08518 6.15969 6.28719 6.35704 6.50837 6.60893 6.65615 7.21079 7.61344 7.71919 8.00759 8.03337 8.33634 8.61308 9.00618 9.32991 9.63974 11.11015 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.005701 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.387142 B = 4909.915241 C = 5504.840373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.365 6.365 3 C 0.470 3.530 4 O -0.453 6.453 5 C -0.145 4.145 6 H 0.136 0.864 7 C -0.121 4.121 8 C -0.154 4.154 9 H 0.131 0.869 10 C 0.541 3.459 11 O -0.514 6.514 12 N -0.594 5.594 13 C 0.250 3.750 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.117 3.883 23 C -0.115 4.115 24 C -0.141 4.141 25 C -0.151 4.151 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -18.064 -2.529 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.336 6.336 5 C -0.164 4.164 6 H 0.154 0.846 7 C -0.158 4.158 8 C -0.175 4.175 9 H 0.149 0.851 10 C 0.326 3.674 11 O -0.389 6.389 12 N -0.325 5.325 13 C 0.131 3.869 14 C -0.563 4.563 15 H 0.075 0.925 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.008 4.008 23 C -0.134 4.134 24 C -0.199 4.199 25 C -0.208 4.208 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.612 -17.430 -2.073 18.148 hybrid contribution 0.334 0.841 0.122 0.913 sum 4.945 -16.589 -1.951 17.420 Atomic orbital electron populations 1.23203 0.76528 1.03113 1.02770 1.86426 1.23146 1.33734 1.84959 1.22579 0.90515 0.81658 0.74223 1.90959 1.66086 1.34965 1.41602 1.21649 0.89176 0.98071 1.07544 0.84579 1.23105 1.02049 0.99375 0.91296 1.22693 1.01314 0.91121 1.02413 0.85121 1.18867 0.83121 0.82308 0.83102 1.90662 1.37742 1.70889 1.39610 1.47965 1.44679 1.25477 1.14387 1.19194 0.91162 0.79119 0.97405 1.21516 1.00593 0.92775 1.41371 0.92482 1.24938 0.94969 0.98805 0.95464 1.69958 1.13637 1.22755 1.47053 0.86468 0.80130 0.82283 0.78677 1.19826 1.21039 1.20964 1.21533 0.92386 0.99309 0.87550 1.21532 0.99516 0.97024 0.95372 1.21760 0.99501 1.01462 0.97188 1.22004 1.01060 0.96611 1.01149 0.91920 0.91967 0.88449 0.86795 0.86728 0.95358 0.93768 0.92891 0.90467 0.91627 0.90644 0.92975 0.92991 0.92506 0.93112 0.91978 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.02 10.57 -39.26 -0.41 -5.44 16 3 C 0.47 7.58 6.33 36.01 0.23 7.80 16 4 O -0.45 -9.41 11.19 -26.79 -0.30 -9.71 16 5 C -0.14 -1.89 4.78 -91.77 -0.44 -2.32 16 6 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 7 C -0.12 -1.55 9.75 -26.73 -0.26 -1.81 16 8 C -0.15 -2.34 4.20 -91.77 -0.39 -2.72 16 9 H 0.13 1.60 6.21 -51.93 -0.32 1.28 16 10 C 0.54 11.70 4.81 -10.99 -0.05 11.65 16 11 O -0.51 -13.53 13.40 -18.76 -0.25 -13.79 16 12 N -0.59 -13.08 2.26 -175.06 -0.40 -13.48 16 13 C 0.25 6.83 5.22 -5.19 -0.03 6.81 16 14 C -0.52 -15.22 9.39 -34.44 -0.32 -15.54 16 15 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 18 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 C 0.12 1.97 4.89 -4.04 -0.02 1.95 16 23 C -0.11 -1.73 3.10 -90.62 -0.28 -2.01 16 24 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 25 C -0.15 -2.17 7.32 37.15 0.27 -1.89 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.11 1.75 7.69 -51.93 -0.40 1.35 16 30 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.03 0.79 7.90 -51.93 -0.41 0.38 16 32 H 0.04 1.39 7.35 -51.93 -0.38 1.01 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 35 H 0.07 0.91 5.57 -51.93 -0.29 0.62 16 36 H 0.08 1.32 7.97 -51.92 -0.41 0.91 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.62 6.83 -51.93 -0.35 0.27 16 41 H 0.06 1.09 4.32 -51.92 -0.22 0.86 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 337.92 15.07 5.09 5.09 Total: -1.00 -36.13 337.92 -7.10 -43.23 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.57 Total: -0.30 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 0.02 Total: 3.75 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.34 Total: -40.10 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.97 Total: -28.93 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.13 -7.10 -43.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727376045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.266 kcal (2) G-P(sol) polarization free energy of solvation -36.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds