Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86794 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47297 * 270.00040 * 3 2 1 5 5 H 1.48502 * 109.47308 * 30.00208 * 3 2 1 6 6 H 1.48505 * 109.46931 * 150.00180 * 3 2 1 7 7 C 1.38950 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99905 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99945 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99690 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00130 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99758 * 179.97438 * 10 9 7 13 13 O 1.45206 * 109.47078 * 179.97438 * 12 10 9 14 14 C 1.34222 * 116.99814 * 179.97438 * 13 12 10 15 15 O 1.20826 * 120.00689 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99730 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47339 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47469 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46817 * 64.99892 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99697 * 18 17 16 24 24 H 0.97001 * 119.99727 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00363 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.46966 * 60.00507 * 12 10 9 27 27 H 1.08991 * 109.47304 * 300.00317 * 12 10 9 28 28 H 1.08997 * 109.47531 * 59.99848 * 16 14 13 29 29 H 1.09006 * 109.47449 * 300.00349 * 16 14 13 30 30 H 1.09008 * 109.47149 * 59.99835 * 17 16 14 31 31 H 1.08997 * 109.47163 * 299.99905 * 17 16 14 32 32 H 1.09002 * 109.47070 * 305.00072 * 18 17 16 33 33 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 34 34 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 35 35 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 37 37 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 38 38 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 41 41 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 42 42 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2102 -3.5578 -0.0031 12 6 1.2437 -4.8629 -0.0032 13 8 2.1872 -5.9666 -0.0049 14 6 1.6741 -7.2069 -0.0051 15 8 0.4763 -7.3653 -0.0044 16 6 2.5921 -8.4020 -0.0063 17 6 1.7588 -9.6852 -0.0069 18 6 2.6908 -10.8986 -0.0087 19 6 3.4859 -10.9329 1.2980 20 6 4.4174 -12.1466 1.2966 21 6 3.5878 -13.4261 1.1705 22 6 2.7928 -13.3918 -0.1363 23 6 1.8617 -12.1783 -0.1350 24 1 -0.4850 0.8401 0.0004 25 1 0.3534 -2.3906 -0.0016 26 1 0.6167 -4.9200 -0.8931 27 1 0.6174 -4.9212 0.8868 28 1 3.2216 -8.3776 0.8832 29 1 3.2204 -8.3768 -0.8967 30 1 1.1296 -9.7094 -0.8967 31 1 1.1304 -9.7107 0.8833 32 1 3.3790 -10.8269 -0.8510 33 1 4.0765 -10.0213 1.3881 34 1 2.7977 -11.0046 2.1403 35 1 4.9835 -12.1713 2.2277 36 1 5.1056 -12.0753 0.4543 37 1 2.8996 -13.4973 2.0127 38 1 4.2516 -14.2907 1.1690 39 1 2.2022 -14.3034 -0.2263 40 1 3.4811 -13.3205 -0.9785 41 1 1.1736 -12.2500 0.7072 42 1 1.2954 -12.1538 -1.0660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -164.894307 kcal Electronic energy + Delta-G solvation = -21592.814119 eV Core-core repulsion = 18150.277893 eV Total energy + Delta-G solvation = -3442.536225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.35236 -39.04313 -38.10641 -36.13940 -34.13883 -33.99074 -31.37641 -31.07407 -30.03628 -28.21334 -25.15273 -24.28463 -22.87913 -21.47775 -20.22047 -20.01229 -19.55644 -18.05739 -17.50425 -16.55361 -16.26678 -15.75646 -15.28511 -15.08157 -14.55926 -14.38040 -14.28794 -14.15901 -13.93552 -13.47224 -13.04918 -12.82392 -12.41327 -12.24374 -12.12933 -11.96574 -11.77618 -11.61459 -11.40756 -11.36186 -11.12835 -11.01762 -10.69863 -10.43835 -10.39530 -10.37067 -10.31743 -10.23673 -10.19870 -9.59909 -8.50835 -8.07547 -6.49319 -3.91312 2.38069 2.78922 3.13738 3.23754 3.30127 3.74964 4.11898 4.35910 4.39318 4.45468 4.68678 4.76243 4.84379 5.03227 5.04880 5.11934 5.15962 5.20637 5.23495 5.25029 5.33375 5.40279 5.43969 5.61428 5.64672 5.70394 5.72713 5.76299 5.85425 5.87053 5.93117 5.99617 6.02811 6.07597 6.13210 6.25349 6.70706 7.48375 7.88918 7.99636 8.49616 9.07821 9.40317 9.90424 10.67946 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.052429 B = 0.002337 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.924380 B =11977.005687 C =12349.307510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.060 3.940 13 O -0.328 6.328 14 C 0.456 3.544 15 O -0.517 6.517 16 C -0.114 4.114 17 C -0.104 4.104 18 C -0.087 4.087 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.114 4.114 24 H 0.274 0.726 25 H 0.395 0.605 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -23.799 0.841 24.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.242 6.242 14 C 0.299 3.701 15 O -0.406 6.406 16 C -0.152 4.152 17 C -0.141 4.141 18 C -0.105 4.105 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.152 4.152 24 H 0.084 0.916 25 H 0.228 0.772 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.496 -23.637 0.848 23.909 hybrid contribution -0.472 0.943 -0.009 1.054 sum 3.024 -22.694 0.839 22.910 Atomic orbital electron populations 1.69620 1.05994 1.28461 1.49731 1.25321 0.95703 0.99883 0.96937 0.85789 0.79216 0.80401 0.78488 1.20266 1.20821 1.19282 1.19725 0.93477 0.81778 1.48137 0.87625 1.41713 1.09371 1.04112 1.63889 1.19351 0.88340 0.84119 0.85872 1.90557 1.13442 1.86820 1.55220 1.22724 0.90897 0.84711 1.03403 1.86559 1.40387 1.14378 1.82909 1.23856 0.88834 0.85015 0.72380 1.90644 1.17080 1.86893 1.46024 1.21454 0.98098 0.89545 1.06061 1.21486 0.97475 0.91300 1.03854 1.21181 0.96947 0.94001 0.98390 1.21694 0.98380 0.98193 0.97520 1.21536 0.97864 0.94625 1.01732 1.21547 0.98754 0.97604 0.97897 1.21523 0.98411 0.97940 0.97836 1.21558 0.97740 0.93829 1.02038 0.91642 0.77158 0.89634 0.89628 0.87536 0.87672 0.90911 0.90931 0.90870 0.91482 0.91821 0.92105 0.91994 0.92087 0.92328 0.92204 0.92049 0.91874 0.91900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 2 C 0.02 0.64 5.50 -17.46 -0.10 0.54 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 8 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -14.17 5.29 -10.96 -0.06 -14.23 16 10 C 0.44 10.74 7.86 -10.98 -0.09 10.65 16 11 O -0.58 -16.23 16.08 -14.11 -0.23 -16.46 16 12 C 0.06 1.17 5.94 36.01 0.21 1.39 16 13 O -0.33 -6.19 9.76 -45.88 -0.45 -6.64 16 14 C 0.46 7.12 7.96 36.01 0.29 7.41 16 15 O -0.52 -9.05 15.73 -18.75 -0.29 -9.35 16 16 C -0.11 -1.23 5.57 -27.89 -0.16 -1.38 16 17 C -0.10 -0.99 3.97 -26.73 -0.11 -1.09 16 18 C -0.09 -0.66 2.19 -90.62 -0.20 -0.86 16 19 C -0.12 -0.89 4.96 -26.73 -0.13 -1.02 16 20 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 21 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 22 C -0.12 -0.77 5.92 -26.76 -0.16 -0.93 16 23 C -0.11 -0.82 5.20 -26.76 -0.14 -0.96 16 24 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 26 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 27 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 28 H 0.11 1.01 6.57 -51.93 -0.34 0.67 16 29 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.74 8.10 -51.92 -0.42 0.32 16 31 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.50 6.57 -51.93 -0.34 0.15 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 345.90 15.07 5.21 5.21 Total: -1.00 -32.05 345.90 -8.00 -40.04 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.85 Total: 5.83 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.03 Total: 3.30 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.67 Total: -37.73 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.97 Total: -32.44 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.05 -8.00 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.850 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds