Wall clock time and date at job start Tue Mar 31 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46862 * 2 1 4 4 C 1.52999 * 109.47488 * 240.00253 * 2 1 3 5 5 C 1.52997 * 109.47380 * 119.99888 * 2 1 3 6 6 N 1.46495 * 109.47172 * 54.29311 * 5 2 1 7 7 C 1.46504 * 120.00256 * 275.97292 * 6 5 2 8 8 C 1.50691 * 109.47367 * 270.00355 * 7 6 5 9 9 H 1.07997 * 120.00137 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99874 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00120 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99803 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.47424 * 59.99837 * 12 10 8 14 14 H 1.48503 * 109.47205 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47269 * 299.99364 * 12 10 8 16 16 C 1.34775 * 120.00029 * 95.97276 * 6 5 2 17 17 O 1.21285 * 120.00013 * 185.33768 * 16 6 5 18 18 C 1.50697 * 119.99989 * 5.34309 * 16 6 5 19 19 H 1.09005 * 115.54947 * 322.34842 * 18 16 6 20 20 C 1.53009 * 117.51942 * 108.04602 * 18 16 6 21 21 C 1.52998 * 117.50408 * 176.67776 * 18 16 6 22 22 H 1.09007 * 117.49375 * 359.97438 * 21 18 16 23 23 C 1.50700 * 117.50329 * 144.99513 * 21 18 16 24 24 O 1.20825 * 119.99431 * 0.02562 * 23 21 18 25 25 O 1.34221 * 119.99988 * 180.02562 * 23 21 18 26 26 H 1.08994 * 109.47240 * 299.99919 * 1 2 3 27 27 H 1.08996 * 109.47090 * 60.00072 * 1 2 3 28 28 H 1.09004 * 109.46861 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47016 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46822 * 299.99982 * 3 2 1 31 31 H 1.08994 * 109.47126 * 60.00011 * 3 2 1 32 32 H 1.09009 * 109.46525 * 303.28376 * 4 2 1 33 33 H 1.08997 * 109.47305 * 63.27778 * 4 2 1 34 34 H 1.08991 * 109.47538 * 183.28184 * 4 2 1 35 35 H 1.09002 * 109.47100 * 294.29365 * 5 2 1 36 36 H 1.08996 * 109.47271 * 174.29726 * 5 2 1 37 37 H 1.09004 * 109.46711 * 30.00163 * 7 6 5 38 38 H 1.08999 * 109.47028 * 149.99623 * 7 6 5 39 39 H 0.97003 * 119.99661 * 180.02562 * 11 10 8 40 40 H 1.08995 * 117.49709 * 359.97438 * 20 18 16 41 41 H 1.08995 * 117.49693 * 214.97087 * 20 18 16 42 42 H 0.96699 * 117.00101 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2492 6 7 1.4429 -2.0570 1.3199 7 6 0.1125 -2.2346 1.9072 8 6 0.2465 -2.4916 3.3860 9 1 1.2247 -2.5203 3.8427 10 6 -0.8799 -2.6912 4.1558 11 7 -2.0711 -2.6567 3.5996 12 14 -0.7138 -3.0104 5.9888 13 1 -0.0388 -1.8555 6.6333 14 1 -2.0623 -3.1903 6.5842 15 1 0.0916 -4.2390 6.2063 16 6 2.1173 -3.1227 0.8447 17 8 1.5858 -4.2125 0.8142 18 6 3.5320 -2.9603 0.3512 19 1 3.7394 -2.0343 -0.1851 20 6 4.6530 -3.5431 1.2142 21 6 4.2708 -4.2206 -0.1033 22 1 3.7337 -5.1674 -0.0451 23 6 5.2295 -4.0868 -1.2584 24 8 5.3910 -3.0130 -1.7880 25 8 5.9038 -5.1606 -1.6986 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6295 -1.7305 -1.2791 33 1 1.7256 -0.1745 -2.1382 34 1 3.1284 -0.7724 -1.2203 35 1 1.7626 -0.1517 2.1363 36 1 3.1253 -0.8105 1.1996 37 1 -0.4785 -1.3328 1.7472 38 1 -0.3831 -3.0824 1.4344 39 1 -2.8635 -2.7968 4.1413 40 1 4.3674 -4.0438 2.1393 41 1 5.5978 -3.0006 1.2455 42 1 6.5071 -5.0256 -2.4422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736249536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:47 Heat of formation + Delta-G solvation = -108.819510 kcal Electronic energy + Delta-G solvation = -23618.926915 eV Core-core repulsion = 20178.822275 eV Total energy + Delta-G solvation = -3440.104640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.66428 -39.52235 -37.36291 -36.44302 -35.58237 -33.82520 -32.36613 -28.40924 -27.12496 -26.74604 -25.96995 -25.36857 -23.92915 -22.03925 -20.67726 -19.24478 -18.47315 -17.70346 -17.32001 -16.56417 -15.84516 -15.70936 -15.45147 -14.86838 -14.46336 -14.09765 -13.96749 -13.72367 -13.27947 -13.02806 -12.55055 -12.35747 -12.24304 -12.05179 -11.75712 -11.64293 -11.35403 -11.29297 -11.21947 -11.02263 -10.84242 -10.75483 -10.62316 -10.58364 -10.52019 -10.32989 -10.14429 -10.06957 -9.55930 -8.98780 -8.41591 -7.62872 -6.04461 -4.09072 1.97007 2.76819 3.08846 3.31038 3.35808 3.38332 3.81042 4.02209 4.43426 4.60409 4.81049 4.89557 5.06041 5.09566 5.23670 5.25211 5.29302 5.34709 5.58358 5.69579 5.77156 5.81347 5.91521 5.94379 6.01404 6.08477 6.17760 6.20580 6.29798 6.34112 6.39875 6.47140 6.63349 6.80450 7.10286 7.44755 7.54673 7.78762 7.91843 8.24060 8.40028 8.87725 9.05194 9.55617 11.03273 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.005735 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.416310 B = 4880.835418 C = 6121.134724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.137 4.137 4 C -0.142 4.142 5 C 0.119 3.881 6 N -0.584 5.584 7 C 0.238 3.762 8 C -0.528 4.528 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.537 3.463 17 O -0.541 6.541 18 C -0.157 4.157 19 H 0.140 0.860 20 C -0.119 4.119 21 C -0.147 4.147 22 H 0.148 0.852 23 C 0.514 3.486 24 O -0.516 6.516 25 O -0.510 6.510 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.264 0.736 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.383 3.608 -8.530 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.199 4.199 5 C -0.006 4.006 6 N -0.313 5.313 7 C 0.119 3.881 8 C -0.567 4.567 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.203 1.203 16 C 0.323 3.677 17 O -0.419 6.419 18 C -0.178 4.178 19 H 0.158 0.842 20 C -0.157 4.157 21 C -0.166 4.166 22 H 0.166 0.834 23 C 0.357 3.643 24 O -0.405 6.405 25 O -0.322 6.322 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.126 0.874 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 12.627 3.257 -8.295 15.454 hybrid contribution 0.427 -0.041 0.474 0.639 sum 13.054 3.216 -7.821 15.553 Atomic orbital electron populations 1.22054 0.93838 1.03202 1.00941 1.21005 0.96964 0.95153 0.95766 1.21802 1.00568 0.95318 1.01772 1.21986 1.00379 1.00675 0.96908 1.21583 0.97045 0.84410 0.97521 1.48029 1.20199 1.05195 1.57884 1.19556 0.77129 0.98696 0.92727 1.21417 0.92893 1.49333 0.93071 0.92578 1.24909 0.95124 0.95204 0.98734 1.69919 0.97603 1.49690 1.36052 0.86588 0.77156 0.78810 0.85021 1.20277 1.21211 1.20254 1.19147 0.85569 0.84779 0.78238 1.90674 1.69189 1.25822 1.56264 1.22780 0.93444 0.97775 1.03788 0.84212 1.23060 0.98443 1.00761 0.93427 1.21624 1.00421 1.01157 0.93432 0.83392 1.22342 0.78262 0.80952 0.82738 1.90704 1.63722 1.28853 1.57179 1.84529 1.55636 1.40110 1.51896 0.92220 0.93742 0.91026 0.92879 0.92770 0.92430 0.92541 0.92948 0.92600 0.90027 0.91301 0.93409 0.93961 0.92682 0.86385 0.87387 0.73223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 6.98 37.16 0.26 -2.04 16 2 C -0.09 -1.26 0.85 -154.50 -0.13 -1.39 16 3 C -0.14 -1.59 8.47 37.16 0.31 -1.28 16 4 C -0.14 -2.00 7.09 37.16 0.26 -1.74 16 5 C 0.12 1.92 4.55 -4.05 -0.02 1.91 16 6 N -0.58 -11.92 2.00 -175.07 -0.35 -12.27 16 7 C 0.24 5.98 3.93 -5.20 -0.02 5.96 16 8 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 9 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 12 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 13 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 16 C 0.54 10.91 6.18 -10.99 -0.07 10.84 16 17 O -0.54 -13.24 15.82 5.55 0.09 -13.15 16 18 C -0.16 -2.43 3.87 -91.77 -0.36 -2.78 16 19 H 0.14 2.03 3.86 -51.93 -0.20 1.83 16 20 C -0.12 -1.53 9.94 -26.72 -0.27 -1.79 16 21 C -0.15 -2.05 5.81 -91.77 -0.53 -2.58 16 22 H 0.15 2.20 7.67 -51.92 -0.40 1.80 16 23 C 0.51 6.57 8.11 36.01 0.29 6.87 16 24 O -0.52 -7.64 17.02 -18.75 -0.32 -7.96 16 25 O -0.51 -5.03 13.42 -39.23 -0.53 -5.56 16 26 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.35 5.74 -51.93 -0.30 1.06 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.92 6.79 -51.92 -0.35 0.57 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.74 6.32 -51.93 -0.33 0.41 16 35 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 36 H 0.07 0.97 6.15 -51.93 -0.32 0.65 16 37 H 0.05 1.20 5.30 -51.93 -0.28 0.92 16 38 H 0.04 1.22 7.36 -51.93 -0.38 0.84 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.12 1.56 8.14 -51.93 -0.42 1.13 16 41 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.41 2.05 9.10 45.56 0.41 2.47 16 LS Contribution 340.25 15.07 5.13 5.13 Total: -1.00 -33.24 340.25 -6.41 -39.65 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.47 Total: 4.28 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.68 Total: -1.25 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.39 Total: -37.60 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.76 Total: -26.67 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.24 -6.41 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736249536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.168 kcal (2) G-P(sol) polarization free energy of solvation -33.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds