Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47109 * 2 1 4 4 C 1.53002 * 109.47518 * 239.99579 * 2 1 3 5 5 C 1.53007 * 109.47032 * 120.00043 * 2 1 3 6 6 N 1.46497 * 109.47299 * 54.30482 * 5 2 1 7 7 C 1.46501 * 119.99736 * 274.13089 * 6 5 2 8 8 C 1.50695 * 109.46933 * 269.99429 * 7 6 5 9 9 H 1.08007 * 120.00391 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00043 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00132 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00052 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47428 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47127 * 119.99820 * 12 10 8 15 15 H 1.48500 * 109.47304 * 240.00055 * 12 10 8 16 16 C 1.34773 * 120.00343 * 94.12479 * 6 5 2 17 17 O 1.21276 * 120.00624 * 184.69112 * 16 6 5 18 18 C 1.50709 * 119.99489 * 4.41742 * 16 6 5 19 19 H 1.08995 * 115.55115 * 22.82554 * 18 16 6 20 20 C 1.53002 * 117.49786 * 168.53105 * 18 16 6 21 21 C 1.52995 * 117.49719 * 237.15098 * 18 16 6 22 22 H 1.09000 * 117.49709 * 144.99740 * 21 18 16 23 23 C 1.50702 * 117.49972 * 0.02562 * 21 18 16 24 24 O 1.20826 * 120.00027 * 11.61486 * 23 21 18 25 25 O 1.34235 * 119.99863 * 191.62347 * 23 21 18 26 26 H 1.08993 * 109.47446 * 300.00208 * 1 2 3 27 27 H 1.09002 * 109.46788 * 60.00276 * 1 2 3 28 28 H 1.09003 * 109.46784 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47314 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47591 * 299.99525 * 3 2 1 31 31 H 1.09002 * 109.47390 * 60.00145 * 3 2 1 32 32 H 1.08997 * 109.47059 * 307.77614 * 4 2 1 33 33 H 1.09008 * 109.46773 * 67.77272 * 4 2 1 34 34 H 1.08991 * 109.47377 * 187.77079 * 4 2 1 35 35 H 1.08999 * 109.46824 * 294.30365 * 5 2 1 36 36 H 1.08998 * 109.46912 * 174.30473 * 5 2 1 37 37 H 1.09000 * 109.47740 * 29.99785 * 7 6 5 38 38 H 1.09003 * 109.46974 * 150.00260 * 7 6 5 39 39 H 0.96994 * 120.00317 * 180.02562 * 11 10 8 40 40 H 1.08998 * 117.49819 * 214.98351 * 20 18 16 41 41 H 1.09004 * 117.49602 * 0.02562 * 20 18 16 42 42 H 0.96701 * 116.99876 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4430 -2.0572 1.3198 7 6 0.1301 -2.2408 1.9433 8 6 0.3068 -2.5176 3.4141 9 1 1.2979 -2.5529 3.8417 10 6 -0.7969 -2.7259 4.2139 11 7 -2.0038 -2.6835 3.6931 12 14 -0.5779 -3.0684 6.0371 13 1 0.8690 -3.0637 6.3714 14 1 -1.2718 -2.0181 6.8249 15 1 -1.1567 -4.3962 6.3644 16 6 2.1015 -3.1174 0.8110 17 8 1.5720 -4.2083 0.7924 18 6 3.4935 -2.9459 0.2595 19 1 4.0453 -2.0845 0.6356 20 6 4.2903 -4.2139 -0.0541 21 6 3.7332 -3.3588 -1.1940 22 1 4.4428 -2.7690 -1.7743 23 6 2.5592 -3.9053 -1.9649 24 8 1.4428 -3.8112 -1.5124 25 8 2.7539 -4.4968 -3.1541 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5677 -1.7010 -1.3214 33 1 1.7947 -0.1335 -2.1338 34 1 3.1211 -0.8432 -1.1824 35 1 1.7623 -0.1519 2.1363 36 1 3.1252 -0.8104 1.1998 37 1 -0.4640 -1.3363 1.8127 38 1 -0.3806 -3.0818 1.4742 39 1 -2.7802 -2.8297 4.2558 40 1 5.3666 -4.1868 0.1158 41 1 3.8074 -5.1721 0.1380 42 1 1.9704 -4.8322 -3.6110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736249538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -99.347451 kcal Electronic energy + Delta-G solvation = -24409.166478 eV Core-core repulsion = 20969.472578 eV Total energy + Delta-G solvation = -3439.693900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65822 -39.08049 -37.20703 -36.04287 -35.52966 -33.65521 -32.26360 -28.20441 -27.05450 -26.70003 -25.74157 -25.33047 -23.92380 -21.80208 -20.70833 -19.11697 -18.27462 -17.66527 -16.99865 -16.42707 -15.68352 -15.50507 -15.06213 -14.74054 -14.43292 -14.07114 -13.81941 -13.61931 -13.14238 -13.04268 -12.38474 -12.30336 -12.21659 -11.86684 -11.72322 -11.50761 -11.31086 -11.20183 -11.03703 -10.89296 -10.77650 -10.60879 -10.50711 -10.37642 -10.33065 -10.09545 -10.04563 -9.99801 -9.42282 -8.75159 -8.34572 -7.42618 -5.96344 -4.00554 2.32613 2.90149 3.33028 3.35018 3.40672 3.44486 3.93509 4.15992 4.50133 4.72754 4.79235 4.93546 5.08043 5.16227 5.27279 5.31507 5.36805 5.39691 5.67866 5.73587 5.78571 5.82467 5.86780 6.01369 6.05302 6.07742 6.20880 6.27157 6.40478 6.42363 6.52787 6.64217 6.78547 6.90555 7.24663 7.61782 7.72419 8.01964 8.12258 8.35076 8.61096 9.00917 9.30775 9.64301 11.11205 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.006474 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.780966 B = 4324.195466 C = 5143.303256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.152 4.152 5 C 0.121 3.879 6 N -0.587 5.587 7 C 0.244 3.756 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.894 5.894 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.545 3.455 17 O -0.526 6.526 18 C -0.156 4.156 19 H 0.131 0.869 20 C -0.124 4.124 21 C -0.141 4.141 22 H 0.139 0.861 23 C 0.490 3.510 24 O -0.463 6.463 25 O -0.522 6.522 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.261 0.739 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.994 4.595 -11.751 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.209 4.209 5 C -0.004 4.004 6 N -0.318 5.318 7 C 0.125 3.875 8 C -0.564 4.564 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.331 3.669 17 O -0.402 6.402 18 C -0.178 4.178 19 H 0.149 0.851 20 C -0.161 4.161 21 C -0.161 4.161 22 H 0.156 0.844 23 C 0.330 3.670 24 O -0.346 6.346 25 O -0.335 6.335 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 12.492 4.170 -11.343 17.381 hybrid contribution -0.412 -0.187 0.688 0.823 sum 12.080 3.983 -10.655 16.593 Atomic orbital electron populations 1.22004 0.93980 1.03253 1.00603 1.20962 0.96884 0.94794 0.95939 1.21814 1.00364 0.95622 1.01640 1.22158 1.00258 1.01900 0.96578 1.21549 0.96658 0.84872 0.97288 1.47907 1.21565 1.05141 1.57176 1.19415 0.77926 0.98345 0.91849 1.21552 0.92865 1.48398 0.93538 0.92581 1.24924 0.95105 0.95410 0.98707 1.69947 0.97678 1.50083 1.35652 0.86493 0.78100 0.77873 0.85229 1.19870 1.21049 1.20998 1.18845 0.85011 0.84917 0.78177 1.90649 1.67645 1.25717 1.56210 1.22731 0.98788 1.01064 0.95175 0.85122 1.23113 1.00159 0.96295 0.96577 1.21590 0.98592 1.05950 0.89937 0.84361 1.22219 0.89936 0.75624 0.79230 1.90912 1.25253 1.51859 1.66620 1.84454 1.44052 1.71089 1.33861 0.92445 0.94000 0.90954 0.93048 0.92954 0.92530 0.90861 0.93673 0.93299 0.90349 0.91747 0.94033 0.93961 0.92912 0.86780 0.86896 0.73332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.00 37.16 0.26 -2.17 16 2 C -0.08 -1.26 0.85 -154.51 -0.13 -1.39 16 3 C -0.14 -1.61 8.47 37.15 0.31 -1.30 16 4 C -0.15 -2.15 6.58 37.16 0.24 -1.90 16 5 C 0.12 2.03 4.57 -4.04 -0.02 2.01 16 6 N -0.59 -12.68 2.00 -175.06 -0.35 -13.02 16 7 C 0.24 6.50 3.93 -5.20 -0.02 6.47 16 8 C -0.52 -15.12 9.39 -34.44 -0.32 -15.44 16 9 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -27.09 13.29 55.43 0.74 -26.36 16 12 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 16 C 0.54 11.59 4.77 -10.98 -0.05 11.54 16 17 O -0.53 -13.63 13.69 -18.18 -0.25 -13.88 16 18 C -0.16 -2.32 3.80 -91.77 -0.35 -2.67 16 19 H 0.13 1.58 6.06 -51.93 -0.31 1.26 16 20 C -0.12 -1.55 9.75 -26.73 -0.26 -1.81 16 21 C -0.14 -1.77 4.71 -91.78 -0.43 -2.20 16 22 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 23 C 0.49 7.42 7.26 36.01 0.26 7.69 16 24 O -0.46 -9.20 11.85 -26.61 -0.32 -9.52 16 25 O -0.52 -6.12 13.42 -39.27 -0.53 -6.64 16 26 H 0.06 1.01 7.73 -51.93 -0.40 0.61 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.50 5.87 -51.93 -0.30 1.20 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.25 3.98 -51.93 -0.21 1.05 16 33 H 0.04 0.58 8.13 -51.92 -0.42 0.16 16 34 H 0.05 0.58 6.50 -51.93 -0.34 0.25 16 35 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.06 0.89 5.61 -51.93 -0.29 0.60 16 37 H 0.04 1.11 5.52 -51.93 -0.29 0.82 16 38 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.11 1.68 7.72 -51.93 -0.40 1.28 16 42 H 0.41 3.27 9.10 45.56 0.41 3.69 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -36.18 328.29 -6.82 -43.00 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.44 Total: 3.80 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.60 Total: 0.48 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.39 Total: -39.38 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -1.09 Total: -30.04 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.18 -6.82 -43.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736249538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.347 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds