Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 C 1.53002 * 109.47190 * 239.99844 * 2 1 3 5 5 C 1.53001 * 109.47201 * 120.00105 * 2 1 3 6 6 N 1.46504 * 109.46962 * 65.37065 * 5 2 1 7 7 C 1.46497 * 119.99589 * 84.43211 * 6 5 2 8 8 C 1.50699 * 109.47152 * 89.99842 * 7 6 5 9 9 H 1.08002 * 120.00229 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00059 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99855 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00007 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46837 * 60.00772 * 12 10 8 14 14 H 1.48498 * 109.47582 * 300.00565 * 12 10 8 15 15 H 1.48505 * 109.46904 * 180.02562 * 12 10 8 16 16 C 1.34776 * 120.00086 * 264.42844 * 6 5 2 17 17 O 1.21281 * 119.99628 * 185.27209 * 16 6 5 18 18 C 1.50702 * 120.00064 * 5.27837 * 16 6 5 19 19 H 1.08997 * 115.54751 * 330.76078 * 18 16 6 20 20 C 1.52994 * 117.49604 * 185.05068 * 18 16 6 21 21 C 1.52995 * 60.00035 * 252.50807 * 20 18 16 22 22 H 1.08998 * 117.51930 * 252.51880 * 21 20 18 23 23 C 1.50708 * 117.49437 * 107.49068 * 21 20 18 24 24 O 1.20826 * 119.99893 * 294.39234 * 23 21 20 25 25 O 1.34227 * 119.99598 * 114.39675 * 23 21 20 26 26 H 1.09002 * 109.47026 * 294.80117 * 1 2 3 27 27 H 1.09004 * 109.46793 * 54.79644 * 1 2 3 28 28 H 1.08995 * 109.47259 * 174.79937 * 1 2 3 29 29 H 1.09004 * 109.46847 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47510 * 299.99947 * 3 2 1 31 31 H 1.09002 * 109.47290 * 60.00431 * 3 2 1 32 32 H 1.09001 * 109.46900 * 300.00749 * 4 2 1 33 33 H 1.09005 * 109.47125 * 60.00140 * 4 2 1 34 34 H 1.08996 * 109.47131 * 180.02562 * 4 2 1 35 35 H 1.09005 * 109.46723 * 305.37617 * 5 2 1 36 36 H 1.08994 * 109.47428 * 185.37578 * 5 2 1 37 37 H 1.08999 * 109.47558 * 329.99530 * 7 6 5 38 38 H 1.09004 * 109.47035 * 210.00200 * 7 6 5 39 39 H 0.96998 * 119.99783 * 359.97438 * 11 10 8 40 40 H 1.09002 * 117.50512 * 0.02562 * 20 18 16 41 41 H 1.09007 * 117.49693 * 145.01792 * 20 18 16 42 42 H 0.96706 * 116.99684 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.6601 -2.1348 1.1863 7 6 2.4976 -3.0863 0.4518 8 6 3.5325 -3.6661 1.3812 9 1 3.5631 -3.3571 2.4156 10 6 4.4398 -4.5919 0.9111 11 7 4.4022 -4.9686 -0.3484 12 14 5.7231 -5.3101 2.0629 13 1 5.0457 -6.0091 3.1845 14 1 6.5721 -4.2172 2.6014 15 1 6.5719 -6.2747 1.3184 16 6 0.5402 -2.5597 1.8041 17 8 0.2757 -3.7430 1.8336 18 6 -0.3835 -1.5646 2.4581 19 1 0.0919 -0.6589 2.8345 20 6 -1.5744 -2.1168 3.2439 21 6 -1.7990 -1.4366 1.8920 22 1 -2.2550 -0.4465 1.8959 23 6 -2.1630 -2.3153 0.7229 24 8 -1.3678 -3.1222 0.3030 25 8 -3.3707 -2.2013 0.1482 26 1 -0.3633 0.4311 0.9329 27 1 -0.3633 0.5925 -0.8398 28 1 -0.3633 -1.0234 -0.0931 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1300 -0.7217 -1.2490 35 1 1.6001 -0.2660 2.1366 36 1 3.1257 -0.6387 1.2987 37 1 2.9950 -2.5728 -0.3710 38 1 1.8746 -3.8884 0.0559 39 1 3.7360 -4.5954 -0.9465 40 1 -1.6898 -3.1998 3.2882 41 1 -1.8828 -1.5743 4.1377 42 1 -3.5586 -2.7866 -0.5983 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736249540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -100.598506 kcal Electronic energy + Delta-G solvation = -24517.845916 eV Core-core repulsion = 21078.097766 eV Total energy + Delta-G solvation = -3439.748150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77089 -39.17628 -37.29374 -36.16281 -35.56587 -33.83077 -32.38825 -28.05159 -27.22762 -26.70246 -25.80097 -25.28428 -23.75115 -21.97492 -20.76290 -19.26511 -18.38193 -17.80832 -17.17614 -16.67515 -15.70889 -15.55881 -15.19538 -14.86992 -14.30000 -13.95687 -13.78637 -13.63737 -13.25554 -13.16925 -12.60328 -12.40174 -12.23609 -12.01956 -11.67849 -11.60197 -11.42605 -11.35701 -11.21849 -10.80100 -10.71196 -10.63373 -10.57501 -10.50201 -10.42344 -10.14703 -10.10374 -10.04363 -8.96247 -8.81847 -8.27735 -7.41861 -6.28379 -3.98866 2.19414 2.89852 3.31035 3.46896 3.51931 3.68836 3.82785 4.10188 4.60701 4.66788 4.72927 4.84269 4.97304 5.04732 5.18462 5.21196 5.29217 5.46295 5.61382 5.64751 5.69715 5.71995 5.77091 5.91003 5.94450 6.00831 6.10963 6.17453 6.22191 6.30383 6.40191 6.55815 6.63481 6.73032 6.99519 7.30522 7.59551 8.05852 8.17981 8.45877 8.56451 8.88770 9.24798 9.70155 11.08501 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.006565 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.942244 B = 4264.095661 C = 5032.692218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.143 4.143 5 C 0.122 3.878 6 N -0.585 5.585 7 C 0.236 3.764 8 C -0.602 4.602 9 H 0.049 0.951 10 C 0.018 3.982 11 N -0.912 5.912 12 Si 1.070 2.930 13 H -0.289 1.289 14 H -0.289 1.289 15 H -0.282 1.282 16 C 0.541 3.459 17 O -0.515 6.515 18 C -0.154 4.154 19 H 0.131 0.869 20 C -0.123 4.123 21 C -0.143 4.143 22 H 0.138 0.862 23 C 0.488 3.512 24 O -0.465 6.465 25 O -0.522 6.522 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.030 0.970 39 H 0.267 0.733 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.153 14.166 2.907 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.003 4.003 6 N -0.316 5.316 7 C 0.116 3.884 8 C -0.641 4.641 9 H 0.067 0.933 10 C -0.186 4.186 11 N -0.549 5.549 12 Si 0.898 3.102 13 H -0.215 1.215 14 H -0.216 1.216 15 H -0.208 1.208 16 C 0.326 3.674 17 O -0.390 6.390 18 C -0.175 4.175 19 H 0.149 0.851 20 C -0.160 4.160 21 C -0.162 4.162 22 H 0.155 0.845 23 C 0.328 3.672 24 O -0.349 6.349 25 O -0.335 6.335 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -10.663 12.451 3.189 16.700 hybrid contribution -1.437 0.956 -0.591 1.824 sum -12.101 13.406 2.599 18.246 Atomic orbital electron populations 1.22135 0.95242 1.02101 1.00799 1.20986 0.95617 0.95165 0.96955 1.21807 1.01180 0.95194 1.01260 1.22030 1.01100 1.01245 0.95589 1.21543 1.00841 0.82016 0.95868 1.47736 1.23614 1.07993 1.52268 1.19464 0.89330 0.87687 0.91902 1.22303 1.16605 1.27579 0.97634 0.93277 1.25756 0.99579 0.94633 0.98612 1.70793 1.36198 1.43254 1.04605 0.83533 0.75580 0.76284 0.74769 1.21522 1.21561 1.20765 1.18880 0.81222 0.87993 0.79313 1.90665 1.73216 1.17062 1.58094 1.22704 0.89153 1.02567 1.03060 0.85090 1.23150 0.98302 1.02531 0.92030 1.21645 1.00354 1.00849 0.93377 0.84456 1.22280 0.79280 0.82238 0.83421 1.90992 1.49414 1.33792 1.60707 1.84449 1.36342 1.63414 1.49248 0.92865 0.93355 0.92127 0.92466 0.92837 0.92907 0.91273 0.93784 0.92400 0.91612 0.90319 0.95018 0.95204 0.92298 0.86781 0.86684 0.73272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 6.37 37.16 0.24 -1.71 16 2 C -0.09 -1.24 0.85 -154.51 -0.13 -1.37 16 3 C -0.14 -1.56 8.47 37.16 0.31 -1.24 16 4 C -0.14 -2.38 6.99 37.16 0.26 -2.12 16 5 C 0.12 2.05 4.57 -4.04 -0.02 2.03 16 6 N -0.59 -12.70 2.00 -175.06 -0.35 -13.05 16 7 C 0.24 6.28 3.17 -5.20 -0.02 6.27 16 8 C -0.60 -17.73 9.39 -34.44 -0.32 -18.05 16 9 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 10 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 11 N -0.91 -28.56 13.65 55.43 0.76 -27.81 16 12 Si 1.07 26.35 29.90 -169.99 -5.08 21.26 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 16 C 0.54 11.60 4.83 -10.98 -0.05 11.55 16 17 O -0.52 -13.61 13.79 -18.29 -0.25 -13.86 16 18 C -0.15 -2.28 3.60 -91.78 -0.33 -2.61 16 19 H 0.13 1.56 5.94 -51.93 -0.31 1.25 16 20 C -0.12 -1.53 9.75 -26.74 -0.26 -1.79 16 21 C -0.14 -1.79 4.37 -91.77 -0.40 -2.19 16 22 H 0.14 1.25 8.03 -51.93 -0.42 0.83 16 23 C 0.49 7.45 6.71 36.01 0.24 7.69 16 24 O -0.47 -9.52 12.83 -26.64 -0.34 -9.86 16 25 O -0.52 -6.10 13.42 -39.25 -0.53 -6.62 16 26 H 0.05 0.59 6.32 -51.93 -0.33 0.26 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.98 3.92 -51.93 -0.20 0.77 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.39 5.76 -51.93 -0.30 1.09 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.00 7.74 -51.93 -0.40 0.60 16 35 H 0.07 0.91 5.80 -51.93 -0.30 0.61 16 36 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 37 H 0.03 0.83 5.21 -51.93 -0.27 0.56 16 38 H 0.03 0.92 7.37 -51.93 -0.38 0.54 16 39 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 40 H 0.11 1.72 7.68 -51.93 -0.40 1.32 16 41 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.41 3.29 9.10 45.56 0.41 3.70 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -37.64 326.32 -6.81 -44.45 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.35 Total: 3.68 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.58 Total: -3.12 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.41 Total: -40.85 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.12 Total: -30.34 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -5.08 Total: 21.26 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.64 -6.81 -44.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736249540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.148 kcal (2) G-P(sol) polarization free energy of solvation -37.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds