Wall clock time and date at job start Tue Mar 31 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.53001 * 109.47402 * 120.00601 * 2 1 3 5 5 C 1.52998 * 109.47352 * 64.99634 * 4 2 1 6 6 N 1.46498 * 109.47007 * 180.02562 * 5 4 2 7 7 C 1.46505 * 119.99572 * 270.00137 * 6 5 4 8 8 C 1.50702 * 109.47005 * 269.99654 * 7 6 5 9 9 H 1.08007 * 119.99874 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00351 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99689 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00238 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47176 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47218 * 119.99990 * 12 10 8 15 15 H 1.48500 * 109.47136 * 240.00270 * 12 10 8 16 16 C 1.34773 * 120.00312 * 90.00165 * 6 5 4 17 17 O 1.21281 * 119.99730 * 359.97438 * 16 6 5 18 18 C 1.50693 * 120.00192 * 179.97438 * 16 6 5 19 19 H 1.08999 * 115.55179 * 304.05125 * 18 16 6 20 20 C 1.53002 * 117.52058 * 158.35009 * 18 16 6 21 21 C 1.53005 * 60.00235 * 252.51758 * 20 18 16 22 22 H 1.08994 * 117.52027 * 252.51625 * 21 20 18 23 23 C 1.50703 * 117.49741 * 107.48417 * 21 20 18 24 24 O 1.20824 * 119.99513 * 36.53687 * 23 21 20 25 25 O 1.34219 * 120.00154 * 216.25494 * 23 21 20 26 26 H 1.09003 * 109.46560 * 299.99505 * 1 2 3 27 27 H 1.08991 * 109.47164 * 59.99637 * 1 2 3 28 28 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46560 * 240.00495 * 2 1 3 30 30 H 1.09006 * 109.47078 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47445 * 300.00176 * 3 2 1 32 32 H 1.09000 * 109.47297 * 60.00349 * 3 2 1 33 33 H 1.09002 * 109.46371 * 304.99412 * 4 2 1 34 34 H 1.09001 * 109.46873 * 185.00018 * 4 2 1 35 35 H 1.09000 * 109.46872 * 60.00253 * 5 4 2 36 36 H 1.09000 * 109.46740 * 300.00265 * 5 4 2 37 37 H 1.08998 * 109.47330 * 30.00015 * 7 6 5 38 38 H 1.08999 * 109.46770 * 150.00795 * 7 6 5 39 39 H 0.96994 * 120.00001 * 180.02562 * 11 10 8 40 40 H 1.08995 * 117.49874 * 145.02720 * 20 18 16 41 41 H 1.09007 * 117.49644 * 0.02562 * 20 18 16 42 42 H 0.96700 * 117.00307 * 180.27404 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.6353 -2.1956 1.1878 6 7 2.1232 -2.8861 2.3842 7 6 3.4516 -3.5041 2.3827 8 6 3.3410 -4.9313 1.9116 9 1 2.3777 -5.3373 1.6401 10 6 4.4696 -5.7188 1.8272 11 7 5.6425 -5.2246 2.1584 12 14 4.3326 -7.4877 1.2427 13 1 2.9138 -7.7983 0.9331 14 1 5.1568 -7.6705 0.0209 15 1 4.8184 -8.4003 2.3086 16 6 1.3502 -2.9528 3.4862 17 8 0.2508 -2.4408 3.4875 18 6 1.8519 -3.6636 4.7166 19 1 2.1541 -4.7005 4.5702 20 6 1.2091 -3.2976 6.0560 21 6 2.6338 -2.8377 5.7402 22 1 3.4506 -3.3312 6.2667 23 6 2.8427 -1.3756 5.4409 24 8 2.2032 -0.5400 6.0348 25 8 3.7432 -1.0013 4.5186 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6055 -0.2618 2.1369 34 1 3.1264 -0.6444 1.2950 35 1 2.0699 -2.6550 0.3001 36 1 0.5490 -2.2724 1.1420 37 1 4.1092 -2.9502 1.7128 38 1 3.8620 -3.4856 3.3923 39 1 6.4365 -5.7785 2.0987 40 1 1.0884 -4.0938 6.7905 41 1 0.4227 -2.5428 6.0472 42 1 3.8448 -0.0522 4.3641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736427033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:01 Heat of formation + Delta-G solvation = -122.696712 kcal Electronic energy + Delta-G solvation = -23766.748626 eV Core-core repulsion = 20326.042225 eV Total energy + Delta-G solvation = -3440.706400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39647 -39.04426 -36.88748 -35.96980 -35.43368 -34.71628 -32.55749 -29.35146 -27.03117 -26.98752 -25.48226 -24.36070 -23.07957 -21.75045 -20.53483 -19.76637 -18.49541 -17.64176 -17.05920 -16.37136 -15.94312 -15.75315 -15.13277 -14.84720 -14.43000 -14.33523 -14.02330 -13.41219 -13.26316 -13.20170 -12.56975 -12.37575 -12.20584 -12.06912 -11.72335 -11.65967 -11.38794 -11.26915 -11.01341 -10.99402 -10.80863 -10.74711 -10.63998 -10.48702 -10.36761 -10.26186 -10.09526 -9.97083 -9.69321 -9.13419 -8.56850 -7.70200 -6.18703 -4.26449 2.39682 3.09880 3.19190 3.20143 3.28986 3.33454 3.74385 4.11560 4.32908 4.90967 4.94963 5.06147 5.11027 5.13632 5.14683 5.22084 5.53879 5.57364 5.72234 5.73269 5.83648 5.89039 5.89922 5.99235 6.01323 6.09141 6.11504 6.26661 6.33484 6.37025 6.39932 6.62511 6.68038 6.72156 6.81746 7.28984 7.56574 7.75985 8.07068 8.15598 8.32090 8.78150 8.97735 9.41434 10.87473 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011317 B = 0.007228 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.638842 B = 3872.834138 C = 5254.783208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.125 4.125 5 C 0.118 3.882 6 N -0.581 5.581 7 C 0.242 3.758 8 C -0.541 4.541 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.888 5.888 12 Si 0.893 3.107 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.536 3.464 17 O -0.569 6.569 18 C -0.140 4.140 19 H 0.148 0.852 20 C -0.125 4.125 21 C -0.147 4.147 22 H 0.148 0.852 23 C 0.512 3.488 24 O -0.518 6.518 25 O -0.495 6.495 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 7.146 1.284 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.164 4.164 5 C -0.005 4.005 6 N -0.310 5.310 7 C 0.122 3.878 8 C -0.580 4.580 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.526 5.526 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.323 3.677 17 O -0.450 6.450 18 C -0.161 4.161 19 H 0.166 0.834 20 C -0.162 4.162 21 C -0.167 4.167 22 H 0.166 0.834 23 C 0.355 3.645 24 O -0.406 6.406 25 O -0.305 6.305 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -4.099 7.160 1.490 8.384 hybrid contribution 0.452 -0.542 -0.498 0.863 sum -3.647 6.618 0.993 7.621 Atomic orbital electron populations 1.21874 0.95397 1.02049 1.01110 1.21060 0.95816 0.95914 0.98555 1.21819 1.00883 0.96199 1.01262 1.21966 1.01097 0.95878 0.97410 1.21380 0.99792 0.91102 0.88243 1.48125 1.19188 1.52432 1.11209 1.19422 0.77177 0.92200 0.99015 1.21594 0.94133 0.96682 1.45542 0.92151 1.24927 0.95115 0.98602 0.95080 1.69941 0.98431 1.36662 1.47612 0.86512 0.78301 0.84539 0.78551 1.19696 1.20895 1.20833 1.19414 0.84488 0.79520 0.84258 1.90616 1.21328 1.49111 1.83966 1.22387 1.02420 1.01707 0.89606 0.83409 1.23108 0.92946 1.03032 0.97121 1.21727 0.99304 0.89524 1.06100 0.83443 1.22329 0.75574 0.91054 0.75558 1.90681 1.46471 1.53718 1.49769 1.84666 1.57159 1.32799 1.55866 0.92834 0.93293 0.92282 0.91155 0.92749 0.93070 0.92970 0.92334 0.91654 0.90501 0.90934 0.94757 0.93612 0.92633 0.86729 0.87108 0.73836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.95 37.16 0.33 -1.55 16 2 C -0.09 -1.24 2.92 -90.62 -0.26 -1.50 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.30 16 4 C -0.12 -1.97 5.01 -26.73 -0.13 -2.11 16 5 C 0.12 2.17 5.16 -4.04 -0.02 2.15 16 6 N -0.58 -11.97 2.46 -175.06 -0.43 -12.40 16 7 C 0.24 5.54 4.99 -5.19 -0.03 5.52 16 8 C -0.54 -13.66 9.39 -34.44 -0.32 -13.98 16 9 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 10 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 12 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 C 0.54 11.12 6.40 -10.99 -0.07 11.05 16 17 O -0.57 -12.93 16.06 5.56 0.09 -12.85 16 18 C -0.14 -2.51 4.42 -91.77 -0.41 -2.92 16 19 H 0.15 2.66 8.14 -51.93 -0.42 2.24 16 20 C -0.12 -1.88 9.58 -26.73 -0.26 -2.13 16 21 C -0.15 -2.34 5.93 -91.76 -0.54 -2.89 16 22 H 0.15 1.99 8.14 -51.93 -0.42 1.56 16 23 C 0.51 8.80 6.96 36.01 0.25 9.05 16 24 O -0.52 -9.91 17.59 -18.75 -0.33 -10.24 16 25 O -0.50 -7.73 13.42 -39.23 -0.53 -8.26 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.80 6.56 -51.93 -0.34 0.46 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 36 H 0.07 1.36 5.84 -51.93 -0.30 1.06 16 37 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.05 1.08 6.59 -51.93 -0.34 0.74 16 39 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 40 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.11 1.86 7.79 -51.93 -0.40 1.46 16 42 H 0.40 4.52 9.10 45.56 0.41 4.93 16 LS Contribution 355.73 15.07 5.36 5.36 Total: -1.00 -30.81 355.73 -7.35 -38.16 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.01 Total: 7.30 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.22 Total: 0.98 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.31 Total: -35.48 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.77 Total: -31.35 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.81 -7.35 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736427033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.536 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds