Wall clock time and date at job start Tue Mar 31 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 C 1.53000 * 109.46952 * 120.00004 * 2 1 3 5 5 C 1.52994 * 109.47038 * 175.00252 * 4 2 1 6 6 N 1.46508 * 109.47274 * 180.02562 * 5 4 2 7 7 C 1.46497 * 120.00137 * 89.99576 * 6 5 4 8 8 C 1.50694 * 109.47115 * 270.00167 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99854 * 179.72538 * 10 8 7 13 13 H 1.48498 * 109.46909 * 90.00086 * 12 10 8 14 14 H 1.48497 * 109.46701 * 209.99996 * 12 10 8 15 15 H 1.48500 * 109.46867 * 330.00101 * 12 10 8 16 16 C 1.34777 * 119.99685 * 269.99923 * 6 5 4 17 17 O 1.21279 * 119.99709 * 179.97438 * 16 6 5 18 18 C 1.50698 * 119.99969 * 359.97438 * 16 6 5 19 19 H 1.09001 * 115.55240 * 325.67127 * 18 16 6 20 20 C 1.53006 * 117.49660 * 111.37772 * 18 16 6 21 21 C 1.53006 * 117.49822 * 180.02562 * 18 16 6 22 22 H 1.08998 * 117.49938 * 0.02562 * 21 18 16 23 23 C 1.50698 * 117.49923 * 145.02624 * 21 18 16 24 24 O 1.20828 * 119.99859 * 359.97438 * 23 21 18 25 25 O 1.34232 * 119.99870 * 180.02562 * 23 21 18 26 26 H 1.08991 * 109.47350 * 299.99814 * 1 2 3 27 27 H 1.08995 * 109.47204 * 60.00569 * 1 2 3 28 28 H 1.09006 * 109.46464 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46927 * 239.99933 * 2 1 3 30 30 H 1.08999 * 109.47017 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47076 * 299.99895 * 3 2 1 32 32 H 1.09001 * 109.47085 * 59.99399 * 3 2 1 33 33 H 1.08997 * 109.47347 * 54.99530 * 4 2 1 34 34 H 1.09003 * 109.47088 * 294.99811 * 4 2 1 35 35 H 1.08997 * 109.47640 * 59.99458 * 5 4 2 36 36 H 1.08996 * 109.47116 * 299.99472 * 5 4 2 37 37 H 1.08998 * 109.46734 * 150.00284 * 7 6 5 38 38 H 1.09002 * 109.47081 * 30.00055 * 7 6 5 39 39 H 0.97001 * 119.99646 * 180.02562 * 11 10 8 40 40 H 1.09000 * 117.49864 * 214.97381 * 20 18 16 41 41 H 1.08994 * 117.49776 * 0.02562 * 20 18 16 42 42 H 0.96697 * 116.99723 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 7 4.0531 -1.5222 2.3840 7 6 4.1930 -2.9805 2.3814 8 6 2.9065 -3.6093 2.8509 9 1 2.0683 -2.9852 3.1235 10 6 2.7992 -4.9816 2.9315 11 7 3.8197 -5.7417 2.5990 12 14 1.2070 -5.7609 3.5208 13 1 0.3169 -6.0081 2.3581 14 1 1.5069 -7.0483 4.1973 15 1 0.5316 -4.8455 4.4754 16 6 4.3736 -0.8164 3.4865 17 8 4.7774 -1.3886 4.4767 18 6 4.2302 0.6838 3.4889 19 1 4.4388 1.1775 2.5398 20 6 3.1388 1.2876 4.3751 21 6 4.6107 1.4278 4.7706 22 1 4.9652 0.8322 5.6119 23 6 5.2441 2.7873 4.6240 24 8 5.4339 3.2499 3.5240 25 8 5.5983 3.4839 5.7154 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -1.7197 1.2952 34 1 1.7517 -0.1583 2.1370 35 1 3.9995 0.1675 1.1420 36 1 3.8532 -1.3940 0.3004 37 1 5.0037 -3.2688 3.0505 38 1 4.4168 -3.3222 1.3708 39 1 3.7440 -6.7071 2.6553 40 1 2.6291 2.1789 4.0090 41 1 2.5249 0.5999 4.9566 42 1 6.0013 4.3510 5.5711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736427034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:04 Heat of formation + Delta-G solvation = -119.822403 kcal Electronic energy + Delta-G solvation = -23139.375216 eV Core-core repulsion = 19698.793455 eV Total energy + Delta-G solvation = -3440.581761 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63179 -39.29096 -36.93266 -36.44421 -35.63726 -34.42212 -32.57653 -28.98741 -27.58071 -27.04196 -25.76441 -24.09233 -23.10238 -22.08484 -20.66997 -19.74805 -18.62151 -17.94672 -17.37063 -16.49438 -15.90721 -15.78141 -15.52457 -14.79903 -14.53696 -14.30782 -13.94814 -13.63982 -13.33398 -13.20723 -12.71214 -12.46496 -12.19939 -12.13810 -11.87468 -11.72743 -11.67699 -11.25908 -11.20753 -10.98838 -10.84364 -10.71856 -10.60936 -10.59139 -10.56797 -10.40386 -10.23311 -9.97328 -9.56399 -8.99041 -8.43434 -7.68412 -6.04597 -4.08665 1.96010 2.75456 3.08136 3.29190 3.36383 3.39982 3.77887 4.04414 4.43345 4.58645 4.77005 4.88711 5.07277 5.10376 5.16925 5.22401 5.25506 5.31103 5.51953 5.56543 5.69878 5.79156 5.85155 5.89829 5.93197 5.98368 6.02736 6.06324 6.23162 6.27061 6.33560 6.39738 6.61032 6.81060 7.04668 7.42433 7.52999 7.77923 7.91539 8.22602 8.37486 8.87953 9.04238 9.55945 11.03673 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.005621 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.654552 B = 4980.006026 C = 6343.252440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.132 4.132 5 C 0.113 3.887 6 N -0.588 5.588 7 C 0.245 3.755 8 C -0.522 4.522 9 H 0.059 0.941 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.534 3.466 17 O -0.539 6.539 18 C -0.148 4.148 19 H 0.134 0.866 20 C -0.116 4.116 21 C -0.147 4.147 22 H 0.149 0.851 23 C 0.514 3.486 24 O -0.517 6.517 25 O -0.510 6.510 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 17.074 -1.815 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.171 4.171 5 C -0.011 4.011 6 N -0.318 5.318 7 C 0.126 3.874 8 C -0.560 4.560 9 H 0.078 0.922 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.723 3.277 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.320 3.680 17 O -0.417 6.417 18 C -0.169 4.169 19 H 0.152 0.848 20 C -0.154 4.154 21 C -0.167 4.167 22 H 0.167 0.833 23 C 0.357 3.643 24 O -0.405 6.405 25 O -0.322 6.322 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.136 0.864 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.336 16.269 -1.555 16.509 hybrid contribution -0.577 0.075 0.113 0.593 sum -2.913 16.344 -1.442 16.664 Atomic orbital electron populations 1.21812 0.95530 1.01814 1.01072 1.21091 0.95575 0.95930 0.98870 1.21905 1.01124 0.96274 1.01250 1.22112 0.95987 1.02105 0.96879 1.21577 0.94224 0.96619 0.88671 1.48144 1.62372 1.09749 1.11554 1.19339 0.98094 0.71972 0.97949 1.21414 0.98678 0.91394 1.44548 0.92250 1.24931 0.96649 0.97148 0.95362 1.69933 1.30144 1.04868 1.48442 0.86537 0.83452 0.78800 0.78877 1.20671 1.21150 1.19916 1.19154 0.78675 0.86495 0.83681 1.90680 1.46872 1.71200 1.32949 1.22512 1.04026 0.94685 0.95678 0.84839 1.23048 0.88971 1.02753 1.00602 1.21647 1.00265 0.92019 1.02750 0.83344 1.22345 0.74408 0.86096 0.81432 1.90708 1.51949 1.70178 1.27687 1.84531 1.74139 1.35235 1.38258 0.92953 0.93246 0.92531 0.91221 0.92527 0.93241 0.92873 0.89784 0.92187 0.91573 0.90756 0.93842 0.94908 0.92751 0.87404 0.86424 0.73208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 2 C -0.10 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.15 -1.56 8.95 37.16 0.33 -1.23 16 4 C -0.13 -1.98 5.01 -26.73 -0.13 -2.12 16 5 C 0.11 1.81 5.03 -4.04 -0.02 1.79 16 6 N -0.59 -12.16 2.46 -175.07 -0.43 -12.59 16 7 C 0.25 6.27 5.20 -5.20 -0.03 6.24 16 8 C -0.52 -14.27 8.92 -34.44 -0.31 -14.58 16 9 H 0.06 1.61 7.42 -52.49 -0.39 1.22 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 12 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 16 C 0.53 10.89 7.46 -10.99 -0.08 10.81 16 17 O -0.54 -13.21 15.84 5.56 0.09 -13.12 16 18 C -0.15 -2.26 4.80 -91.77 -0.44 -2.70 16 19 H 0.13 1.90 5.97 -51.93 -0.31 1.59 16 20 C -0.12 -1.46 9.94 -26.70 -0.27 -1.72 16 21 C -0.15 -2.03 5.82 -91.74 -0.53 -2.56 16 22 H 0.15 2.17 7.67 -51.93 -0.40 1.77 16 23 C 0.51 6.53 8.11 36.00 0.29 6.82 16 24 O -0.52 -7.68 17.02 -18.75 -0.32 -8.00 16 25 O -0.51 -4.98 13.42 -39.26 -0.53 -5.51 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.51 7.26 -51.93 -0.38 1.13 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.91 4.42 -51.93 -0.23 0.68 16 36 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 37 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 38 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.41 2.02 9.10 45.56 0.41 2.44 16 LS Contribution 352.88 15.07 5.32 5.32 Total: -1.00 -33.44 352.88 -7.13 -40.58 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.77 Total: 2.66 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.21 Total: -0.32 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.31 Total: -38.10 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.76 Total: -26.63 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.44 -7.13 -40.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736427034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.245 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds