Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86804 * 119.99392 * 2 1 4 4 H 1.48504 * 109.46707 * 239.99420 * 3 2 1 5 5 H 1.48494 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46800 * 120.00148 * 3 2 1 7 7 C 1.38947 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99916 * 201.12704 * 7 2 1 9 9 N 1.37100 * 119.99930 * 21.13198 * 7 2 1 10 10 C 1.46500 * 120.00040 * 16.26263 * 9 7 2 11 11 C 1.50710 * 109.46741 * 264.14430 * 10 9 7 12 12 O 1.20822 * 120.00055 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99967 * 180.02562 * 11 10 9 14 14 C 1.34775 * 119.99989 * 196.25926 * 9 7 2 15 15 O 1.21296 * 119.99922 * 0.02562 * 14 9 7 16 16 C 1.50694 * 120.00252 * 180.02562 * 14 9 7 17 17 C 1.52995 * 109.47406 * 179.97438 * 16 14 9 18 18 C 1.52998 * 109.47258 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47151 * 65.00080 * 18 17 16 20 20 C 1.52996 * 109.47361 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47450 * 300.00230 * 20 19 18 22 22 C 1.53005 * 109.46856 * 59.99873 * 21 20 19 23 23 C 1.52997 * 109.47303 * 185.00090 * 18 17 16 24 24 H 0.96993 * 120.00433 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47247 * 24.13624 * 10 9 7 26 26 H 1.08992 * 109.47157 * 144.14466 * 10 9 7 27 27 H 0.96691 * 117.00141 * 180.02562 * 13 11 10 28 28 H 1.08997 * 109.47023 * 59.99952 * 16 14 9 29 29 H 1.09006 * 109.47204 * 300.00265 * 16 14 9 30 30 H 1.09006 * 109.47288 * 59.99998 * 17 16 14 31 31 H 1.08996 * 109.47214 * 300.00371 * 17 16 14 32 32 H 1.09000 * 109.47107 * 305.00264 * 18 17 16 33 33 H 1.08997 * 109.47087 * 300.00205 * 19 18 17 34 34 H 1.09000 * 109.46965 * 60.00097 * 19 18 17 35 35 H 1.08999 * 109.47534 * 179.97438 * 20 19 18 36 36 H 1.09000 * 109.46749 * 60.00274 * 20 19 18 37 37 H 1.09000 * 109.47181 * 299.99780 * 21 20 19 38 38 H 1.09002 * 109.47587 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.46621 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47302 * 59.99980 * 22 21 20 41 41 H 1.09000 * 109.47181 * 300.00128 * 23 18 17 42 42 H 1.08999 * 109.47005 * 59.99714 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0345 -1.2345 0.3377 9 7 1.3926 -2.3509 -0.4270 10 6 0.1549 -2.2708 -1.2067 11 6 -1.0289 -2.4276 -0.2873 12 8 -0.8564 -2.5900 0.8975 13 8 -2.2750 -2.3878 -0.7848 14 6 1.9254 -3.5527 -0.1301 15 8 2.9500 -3.6190 0.5158 16 6 1.2484 -4.8141 -0.6005 17 6 2.0522 -6.0291 -0.1333 18 6 1.3645 -7.3099 -0.6103 19 6 1.3964 -7.3669 -2.1389 20 6 0.7092 -8.6479 -2.6160 21 6 1.4425 -9.8632 -2.0450 22 6 1.4105 -9.8061 -0.5163 23 6 2.0973 -8.5254 -0.0393 24 1 -0.4850 0.8399 -0.0004 25 1 0.1017 -1.3032 -1.7056 26 1 0.1434 -3.0654 -1.9526 27 1 -3.0022 -2.4926 -0.1562 28 1 1.1928 -4.8124 -1.6890 29 1 0.2416 -4.8626 -0.1854 30 1 2.1082 -6.0311 0.9553 31 1 3.0588 -5.9804 -0.5486 32 1 0.3296 -7.3156 -0.2681 33 1 0.8743 -6.5009 -2.5458 34 1 2.4312 -7.3611 -2.4812 35 1 0.7315 -8.6883 -3.7050 36 1 -0.3257 -8.6540 -2.2738 37 1 2.4774 -9.8570 -2.3872 38 1 0.9526 -10.7758 -2.3845 39 1 1.9333 -10.6717 -0.1095 40 1 0.3756 -9.8123 -0.1740 41 1 3.1321 -8.5197 -0.3815 42 1 2.0746 -8.4848 1.0497 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739076639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = -152.406699 kcal Electronic energy + Delta-G solvation = -23328.433561 eV Core-core repulsion = 19886.438839 eV Total energy + Delta-G solvation = -3441.994722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52275 -38.80165 -37.95761 -35.28135 -34.54054 -33.43762 -31.73387 -30.75774 -29.10860 -27.63179 -25.27787 -23.56080 -22.49270 -21.15661 -20.68251 -19.64712 -18.63777 -17.17482 -16.88784 -16.26419 -15.71464 -15.30925 -14.84648 -14.52277 -14.44608 -14.18382 -13.99997 -13.93949 -13.68995 -12.88899 -12.63167 -12.28358 -12.03392 -11.88074 -11.77926 -11.57500 -11.42231 -11.27227 -11.09234 -10.95695 -10.87069 -10.54872 -10.47772 -10.36086 -10.28999 -10.26344 -9.91932 -9.79585 -9.62892 -9.02705 -8.45532 -7.89313 -6.43275 -3.87147 3.17585 3.24334 3.28406 3.45448 3.67688 4.09665 4.26017 4.63159 4.73273 4.77486 4.85774 5.07252 5.20442 5.23605 5.42113 5.46444 5.53143 5.54798 5.65328 5.69394 5.73980 5.85203 5.91409 5.99920 6.04773 6.12184 6.16590 6.17677 6.25230 6.31099 6.41875 6.43383 6.49284 6.60885 6.69285 6.78997 7.48631 7.56063 8.01631 8.39409 9.02900 9.11770 9.33689 9.88495 10.65806 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024800 B = 0.004335 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.780855 B = 6457.309311 C = 7058.538192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.028 3.972 3 Si 0.929 3.071 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.107 0.893 9 N -0.436 5.436 10 C 0.147 3.853 11 C 0.489 3.511 12 O -0.504 6.504 13 O -0.535 6.535 14 C 0.461 3.539 15 O -0.577 6.577 16 C -0.134 4.134 17 C -0.092 4.092 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.114 4.114 24 H 0.271 0.729 25 H 0.128 0.872 26 H 0.077 0.923 27 H 0.391 0.609 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -13.299 -6.953 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.174 4.174 3 Si 0.756 3.244 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.156 5.156 10 C 0.020 3.980 11 C 0.329 3.671 12 O -0.389 6.389 13 O -0.346 6.346 14 C 0.251 3.749 15 O -0.460 6.460 16 C -0.174 4.174 17 C -0.130 4.130 18 C -0.106 4.106 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.152 4.152 24 H 0.081 0.919 25 H 0.146 0.854 26 H 0.094 0.906 27 H 0.248 0.752 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.309 -13.166 -6.561 14.890 hybrid contribution -0.492 1.000 0.566 1.250 sum -2.801 -12.166 -5.995 13.849 Atomic orbital electron populations 1.69782 1.06022 1.27904 1.48830 1.25211 0.95305 0.99921 0.96965 0.85943 0.78974 0.80386 0.79115 1.19870 1.21044 1.19860 1.19676 0.97653 0.83465 1.42386 0.87572 1.43472 1.19620 1.05574 1.46921 1.20666 0.81402 1.04662 0.91244 1.23895 0.83126 0.70789 0.89269 1.90613 1.85576 1.44978 1.17774 1.84526 1.17432 1.86404 1.46242 1.20168 0.87250 0.84323 0.83191 1.90514 1.26223 1.86619 1.42662 1.21643 1.00227 0.94293 1.01281 1.21295 0.98872 0.91390 1.01484 1.21208 0.99742 0.94556 0.95120 1.21655 1.00922 0.97274 0.95593 1.21540 0.99503 0.94899 0.99758 1.21534 1.00601 0.97760 0.95747 1.21529 1.00787 0.97688 0.95651 1.21564 0.99479 0.93875 1.00246 0.91902 0.85409 0.90552 0.75243 0.90435 0.90725 0.91517 0.91503 0.91463 0.91659 0.91974 0.92341 0.92170 0.92156 0.92561 0.92431 0.92190 0.91996 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.38 9.25 55.50 0.51 -22.86 16 2 C 0.03 0.74 4.89 -17.47 -0.09 0.65 16 3 Si 0.93 20.66 29.60 -169.99 -5.03 15.63 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.45 9.35 -14.93 -0.14 -8.59 16 8 H 0.11 3.09 7.36 -52.49 -0.39 2.71 16 9 N -0.44 -11.06 2.18 -116.10 -0.25 -11.31 16 10 C 0.15 3.19 4.97 -5.19 -0.03 3.16 16 11 C 0.49 10.83 5.87 36.01 0.21 11.05 16 12 O -0.50 -13.19 16.81 -18.75 -0.32 -13.50 16 13 O -0.54 -9.57 13.42 -39.25 -0.53 -10.09 16 14 C 0.46 11.30 7.42 -10.99 -0.08 11.22 16 15 O -0.58 -16.09 15.62 5.54 0.09 -16.00 16 16 C -0.13 -2.47 4.06 -27.89 -0.11 -2.59 16 17 C -0.09 -1.53 3.97 -26.73 -0.11 -1.63 16 18 C -0.09 -1.13 2.19 -90.62 -0.20 -1.32 16 19 C -0.12 -1.34 4.96 -26.73 -0.13 -1.48 16 20 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 21 C -0.12 -1.10 5.92 -26.73 -0.16 -1.25 16 22 C -0.12 -1.16 5.92 -26.75 -0.16 -1.32 16 23 C -0.11 -1.31 5.20 -26.76 -0.14 -1.45 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.13 2.89 6.34 -51.93 -0.33 2.56 16 26 H 0.08 1.33 6.68 -51.93 -0.35 0.99 16 27 H 0.39 5.38 9.10 45.56 0.41 5.79 16 28 H 0.08 1.23 5.84 -51.93 -0.30 0.92 16 29 H 0.07 1.38 7.52 -51.93 -0.39 0.99 16 30 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 334.20 15.07 5.04 5.04 Total: -1.00 -33.04 334.20 -7.66 -40.70 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.89 Total: 7.29 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.29 Total: 5.11 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.26 Total: -34.18 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.76 Total: -39.59 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.04 -7.66 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739076639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.708 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds