Wall clock time and date at job start Tue Mar 31 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00345 * 2 1 4 4 N 1.34777 * 119.99764 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99817 * 179.97438 * 4 2 1 6 6 H 1.08996 * 109.47291 * 35.00118 * 5 4 2 7 7 C 1.50700 * 109.47151 * 155.00278 * 5 4 2 8 8 O 1.20826 * 119.99783 * 12.26474 * 7 5 4 9 9 O 1.34228 * 120.00439 * 192.26990 * 7 5 4 10 10 C 1.45203 * 117.00373 * 174.36540 * 9 7 5 11 11 C 1.52993 * 109.46990 * 185.01205 * 10 9 7 12 12 C 1.50705 * 115.54889 * 306.99966 * 11 10 9 13 13 H 1.08006 * 119.99680 * 143.98284 * 12 11 10 14 14 C 1.37874 * 120.00261 * 323.97651 * 12 11 10 15 15 N 1.31515 * 119.99591 * 3.37597 * 14 12 11 16 16 Si 1.86797 * 120.00135 * 183.37049 * 14 12 11 17 17 H 1.48502 * 109.46791 * 60.00588 * 16 14 12 18 18 H 1.48501 * 109.47098 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47542 * 300.00412 * 16 14 12 20 20 C 1.53004 * 117.49953 * 161.33492 * 11 10 9 21 21 C 1.52998 * 117.50069 * 92.67107 * 11 10 9 22 22 C 1.52995 * 109.47268 * 275.00007 * 5 4 2 23 23 C 1.52999 * 109.47132 * 54.20795 * 22 5 4 24 24 C 1.52999 * 109.47477 * 174.20892 * 22 5 4 25 25 H 1.09002 * 109.47097 * 240.00328 * 1 2 3 26 26 H 1.08998 * 109.46946 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47444 * 119.99869 * 1 2 3 28 28 H 0.96998 * 120.00286 * 359.97438 * 4 2 1 29 29 H 1.09001 * 109.46649 * 305.00550 * 10 9 7 30 30 H 1.09001 * 109.47165 * 65.00966 * 10 9 7 31 31 H 0.97002 * 119.99689 * 184.99739 * 15 14 12 32 32 H 1.08999 * 117.49695 * 359.97438 * 20 11 10 33 33 H 1.08993 * 117.49867 * 145.02101 * 20 11 10 34 34 H 1.09002 * 117.49869 * 214.97482 * 21 11 10 35 35 H 1.09001 * 117.50307 * 359.97438 * 21 11 10 36 36 H 1.09002 * 109.47593 * 294.21148 * 22 5 4 37 37 H 1.09002 * 109.47040 * 60.00032 * 23 22 5 38 38 H 1.09004 * 109.47286 * 180.02562 * 23 22 5 39 39 H 1.08995 * 109.47041 * 299.99666 * 23 22 5 40 40 H 1.09004 * 109.47364 * 66.78381 * 24 22 5 41 41 H 1.09002 * 109.47745 * 186.78694 * 24 22 5 42 42 H 1.09000 * 109.46909 * 306.78686 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 1 4.0094 -0.3256 0.5884 7 6 4.1484 -2.4551 0.5988 8 8 3.3858 -3.3742 0.7822 9 8 5.4431 -2.5812 0.9296 10 6 5.8323 -3.7996 1.6170 11 6 7.3055 -3.7093 2.0201 12 6 8.2640 -3.3693 0.9080 13 1 9.1220 -2.7442 1.1069 14 6 8.0456 -3.8563 -0.3633 15 7 6.9662 -4.5621 -0.6206 16 14 9.2829 -3.5134 -1.7201 17 1 10.6026 -4.0791 -1.3410 18 1 8.8190 -4.1414 -2.9833 19 1 9.4105 -2.0467 -1.9147 20 6 7.7988 -4.6612 3.1116 21 6 7.6241 -3.1713 3.4165 22 6 4.1553 -1.0412 -1.4382 23 6 3.5297 0.1910 -2.0949 24 6 5.6783 -0.8960 -1.4286 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8899 28 1 1.6958 -2.0073 -0.0005 29 1 5.2186 -3.9252 2.5090 30 1 5.6887 -4.6526 0.9539 31 1 6.8476 -4.9657 -1.4947 32 1 7.0738 -5.3515 3.5428 33 1 8.8168 -5.0412 3.0255 34 1 8.5273 -2.5719 3.5309 35 1 6.7843 -2.8813 4.0479 36 1 3.8789 -1.9327 -2.0013 37 1 3.8061 1.0825 -1.5319 38 1 3.8923 0.2805 -3.1189 39 1 2.4447 0.0875 -2.1018 40 1 6.1294 -1.8222 -1.0723 41 1 6.0298 -0.6859 -2.4388 42 1 5.9610 -0.0765 -0.7678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:28 Heat of formation + Delta-G solvation = -104.412291 kcal Electronic energy + Delta-G solvation = -23866.831704 eV Core-core repulsion = 20426.918176 eV Total energy + Delta-G solvation = -3439.913528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43712 -39.12951 -36.90262 -35.82780 -35.12550 -33.22515 -32.21193 -30.04608 -27.84735 -26.41823 -25.90017 -25.23383 -21.35108 -20.97816 -20.67265 -19.75751 -19.21657 -17.48688 -16.90419 -16.14862 -16.03643 -15.87931 -15.27616 -14.97696 -14.61452 -13.92215 -13.76059 -13.45480 -13.07472 -12.81194 -12.72700 -12.32910 -12.21236 -12.08468 -11.86770 -11.69352 -11.38268 -11.20833 -11.10708 -10.84986 -10.59068 -10.56041 -10.47171 -10.33291 -10.00982 -9.82212 -9.55718 -9.45862 -9.02904 -8.96068 -8.77870 -8.26482 -6.03910 -4.14844 2.60622 2.83575 2.95265 3.26335 3.31863 3.34747 3.72031 4.33143 4.75971 4.91109 5.00656 5.13472 5.19994 5.25582 5.31172 5.46679 5.58070 5.63337 5.75041 5.91980 5.99690 6.04767 6.14386 6.16545 6.35698 6.38708 6.41029 6.45374 6.56997 6.60182 6.68520 6.76976 6.93786 7.07943 7.20066 7.41186 7.49029 7.53157 7.86540 8.21561 8.28201 8.55718 8.82848 9.47094 10.92832 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.005867 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.107136 B = 4771.374201 C = 5659.102579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.542 6.542 4 N -0.715 5.715 5 C 0.156 3.844 6 H 0.118 0.882 7 C 0.457 3.543 8 O -0.528 6.528 9 O -0.305 6.305 10 C 0.121 3.879 11 C 0.046 3.954 12 C -0.477 4.477 13 H 0.061 0.939 14 C 0.077 3.923 15 N -0.883 5.883 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.195 4.195 21 C -0.210 4.210 22 C -0.093 4.093 23 C -0.135 4.135 24 C -0.157 4.157 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.409 0.591 29 H 0.020 0.980 30 H 0.117 0.883 31 H 0.262 0.738 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.063 5.411 -0.834 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.300 3.700 3 O -0.419 6.419 4 N -0.370 5.370 5 C 0.050 3.950 6 H 0.135 0.865 7 C 0.299 3.701 8 O -0.420 6.420 9 O -0.218 6.218 10 C 0.048 3.952 11 C 0.045 3.955 12 C -0.514 4.514 13 H 0.079 0.921 14 C -0.125 4.125 15 N -0.521 5.521 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.233 4.233 21 C -0.247 4.247 22 C -0.113 4.113 23 C -0.192 4.192 24 C -0.214 4.214 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.246 0.754 29 H 0.038 0.962 30 H 0.135 0.865 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.917 5.821 -0.947 11.538 hybrid contribution 0.364 -0.593 -0.576 0.903 sum -9.553 5.228 -1.523 10.996 Atomic orbital electron populations 1.21903 0.91530 1.05381 1.04384 1.20699 0.90527 0.83263 0.75485 1.90728 1.70576 1.31305 1.49308 1.45889 1.06003 1.09768 1.75346 1.20511 0.80779 0.95403 0.98343 0.86456 1.23209 0.82432 0.88682 0.75757 1.90556 1.57697 1.41059 1.52679 1.86506 1.23507 1.44061 1.67705 1.22904 0.93165 0.85893 0.93278 1.18927 0.91705 0.97515 0.87325 1.20408 1.08133 1.31164 0.91723 0.92073 1.24885 0.94842 0.94786 0.98031 1.69794 1.25265 1.34176 1.22825 0.86671 0.81510 0.78904 0.81102 1.20295 1.21175 1.19809 1.22991 1.01296 0.91582 1.07414 1.22966 1.01772 0.96609 1.03341 1.21354 0.97567 0.99517 0.92824 1.21891 0.99691 0.97825 0.99834 1.21968 0.92882 1.05082 1.01496 0.89357 0.88933 0.89401 0.75398 0.96152 0.86548 0.92732 0.91480 0.89767 0.90270 0.91359 0.90938 0.91289 0.93148 0.93515 0.88720 0.92981 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.32 36.00 0.37 -1.06 16 2 C 0.51 6.68 6.11 -10.99 -0.07 6.62 16 3 O -0.54 -8.88 14.22 5.56 0.08 -8.80 16 4 N -0.72 -9.94 4.80 -54.94 -0.26 -10.20 16 5 C 0.16 2.61 2.35 -69.08 -0.16 2.45 16 6 H 0.12 2.03 7.57 -51.93 -0.39 1.64 16 7 C 0.46 9.22 7.02 36.01 0.25 9.48 16 8 O -0.53 -11.32 15.58 -18.75 -0.29 -11.61 16 9 O -0.31 -6.92 7.73 -39.25 -0.30 -7.22 16 10 C 0.12 2.86 4.38 37.15 0.16 3.02 16 11 C 0.05 1.10 2.20 -155.66 -0.34 0.76 16 12 C -0.48 -12.35 8.76 -34.44 -0.30 -12.65 16 13 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 14 C 0.08 1.97 5.25 -17.82 -0.09 1.88 16 15 N -0.88 -23.05 10.24 55.43 0.57 -22.49 16 16 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.19 -4.20 9.96 -26.69 -0.27 -4.47 16 21 C -0.21 -4.43 9.92 -26.69 -0.26 -4.70 16 22 C -0.09 -1.51 2.66 -90.62 -0.24 -1.75 16 23 C -0.14 -1.96 7.68 37.16 0.29 -1.67 16 24 C -0.16 -2.80 8.65 37.16 0.32 -2.48 16 25 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.41 5.24 7.72 -40.82 -0.32 4.92 16 29 H 0.02 0.46 8.03 -51.93 -0.42 0.04 16 30 H 0.12 3.04 6.01 -51.93 -0.31 2.73 16 31 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.07 7.13 -51.93 -0.37 0.70 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.65 5.95 -51.93 -0.31 0.34 16 40 H 0.09 2.04 6.35 -51.93 -0.33 1.71 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 LS Contribution 343.10 15.07 5.17 5.17 Total: -1.00 -28.49 343.10 -7.05 -35.54 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.64 Total: 8.99 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -0.35 Total: -4.58 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.30 Total: -32.68 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.52 Total: -27.63 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.49 -7.05 -35.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.872 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds