Wall clock time and date at job start Tue Mar 31 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21279 * 119.99996 * 2 1 4 4 N 1.34775 * 120.00214 * 179.97438 * 2 1 3 5 5 C 1.46493 * 120.00266 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47598 * 325.00136 * 5 4 2 7 7 C 1.50704 * 109.47446 * 204.99911 * 5 4 2 8 8 O 1.20820 * 119.99697 * 340.77023 * 7 5 4 9 9 O 1.34223 * 119.99887 * 160.76368 * 7 5 4 10 10 C 1.45204 * 116.99981 * 174.91762 * 9 7 5 11 11 C 1.52997 * 109.47356 * 184.56176 * 10 9 7 12 12 C 1.50698 * 115.54857 * 306.11127 * 11 10 9 13 13 H 1.07999 * 119.99747 * 146.73639 * 12 11 10 14 14 C 1.37868 * 120.00038 * 326.73374 * 12 11 10 15 15 N 1.31517 * 120.00308 * 345.28351 * 14 12 11 16 16 Si 1.86803 * 119.99998 * 165.28543 * 14 12 11 17 17 H 1.48496 * 109.47362 * 94.96350 * 16 14 12 18 18 H 1.48504 * 109.47091 * 214.96325 * 16 14 12 19 19 H 1.48496 * 109.47034 * 334.96269 * 16 14 12 20 20 C 1.53001 * 117.49794 * 160.43994 * 11 10 9 21 21 C 1.53005 * 117.49735 * 91.78141 * 11 10 9 22 22 C 1.53008 * 109.46903 * 85.00226 * 5 4 2 23 23 C 1.53001 * 109.46937 * 60.31565 * 22 5 4 24 24 C 1.53000 * 109.47003 * 180.31465 * 22 5 4 25 25 H 1.08996 * 109.47661 * 89.99757 * 1 2 3 26 26 H 1.08999 * 109.47117 * 210.00123 * 1 2 3 27 27 H 1.09001 * 109.47278 * 329.99925 * 1 2 3 28 28 H 0.97004 * 119.99315 * 0.02562 * 4 2 1 29 29 H 1.09004 * 109.46746 * 304.56347 * 10 9 7 30 30 H 1.08999 * 109.47030 * 64.55855 * 10 9 7 31 31 H 0.96998 * 119.99956 * 185.03436 * 15 14 12 32 32 H 1.09000 * 117.50267 * 0.02562 * 20 11 10 33 33 H 1.09007 * 117.49814 * 145.01899 * 20 11 10 34 34 H 1.09002 * 117.49380 * 214.97812 * 21 11 10 35 35 H 1.08994 * 117.50226 * 359.97438 * 21 11 10 36 36 H 1.08994 * 109.46897 * 300.31354 * 22 5 4 37 37 H 1.08994 * 109.47499 * 60.00158 * 23 22 5 38 38 H 1.09003 * 109.46726 * 180.02562 * 23 22 5 39 39 H 1.08994 * 109.46761 * 299.99520 * 23 22 5 40 40 H 1.09000 * 109.46925 * 299.02929 * 24 22 5 41 41 H 1.09001 * 109.47109 * 59.02601 * 24 22 5 42 42 H 1.09004 * 109.47204 * 179.02564 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6458 -1.1672 0.0000 6 1 4.0090 -0.3258 -0.5902 7 6 4.1480 -2.4553 -0.5998 8 8 3.4179 -3.4156 -0.6664 9 8 5.4062 -2.5356 -1.0601 10 6 5.8583 -3.8366 -1.5198 11 6 7.3389 -3.7582 -1.8970 12 6 7.7013 -2.6812 -2.8869 13 1 8.6612 -2.1903 -2.8234 14 6 6.8075 -2.3227 -3.8734 15 7 5.7768 -3.0950 -4.1393 16 14 7.0605 -0.7398 -4.8326 17 1 7.7889 -1.0354 -6.0924 18 1 5.7408 -0.1389 -5.1532 19 1 7.8528 0.2133 -4.0147 20 6 8.1215 -5.0712 -1.9635 21 6 8.3633 -4.0933 -0.8110 22 6 4.1563 -1.0405 1.4368 23 6 3.6531 -2.2258 2.2631 24 6 5.6863 -1.0327 1.4355 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6958 -2.0072 0.0005 29 1 5.7242 -4.5697 -0.7243 30 1 5.2766 -4.1361 -2.3916 31 1 5.1892 -2.8814 -4.8809 32 1 7.5814 -5.9910 -1.7390 33 1 8.8988 -5.1560 -2.7231 34 1 9.2995 -3.5350 -0.8128 35 1 7.9824 -4.3692 0.1723 36 1 3.7886 -0.1116 1.8724 37 1 4.0208 -3.1547 1.8275 38 1 4.0164 -2.1353 3.2868 39 1 2.5631 -2.2313 2.2640 40 1 6.0541 -1.9689 1.0156 41 1 6.0448 -0.1984 0.8326 42 1 6.0499 -0.9251 2.4575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744276014.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:31 Heat of formation + Delta-G solvation = -108.196391 kcal Electronic energy + Delta-G solvation = -23806.355197 eV Core-core repulsion = 20366.277578 eV Total energy + Delta-G solvation = -3440.077619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50855 -39.14055 -36.99858 -35.97869 -35.17737 -33.30989 -32.19643 -30.11515 -27.68932 -26.84437 -25.97330 -25.21578 -21.79699 -21.28361 -20.72244 -19.27577 -19.19253 -17.58397 -16.95959 -16.20512 -16.07594 -16.04795 -15.16730 -14.74790 -14.65826 -14.14994 -13.76776 -13.70518 -13.50185 -13.04525 -12.69999 -12.42355 -12.30185 -12.19219 -11.87647 -11.81359 -11.59928 -11.22319 -10.97811 -10.90933 -10.86533 -10.79454 -10.51756 -10.36062 -9.98441 -9.94821 -9.60191 -9.46629 -9.19557 -9.07877 -8.80360 -8.13018 -6.09861 -4.10659 2.56622 2.75910 2.91826 3.26176 3.35877 3.40517 3.64146 4.35197 4.71337 4.85102 4.89049 5.03692 5.08932 5.14792 5.28534 5.33360 5.52140 5.59946 5.68738 5.73349 5.83055 5.93438 5.96647 6.07456 6.12097 6.14108 6.32177 6.35582 6.40868 6.55459 6.60399 6.63081 6.75374 6.92442 7.21415 7.34128 7.41491 7.48638 7.86410 8.17928 8.29612 8.47484 8.83190 9.48441 10.92256 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.006263 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.548018 B = 4469.282527 C = 5325.603780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.546 6.546 4 N -0.713 5.713 5 C 0.153 3.847 6 H 0.119 0.881 7 C 0.459 3.541 8 O -0.524 6.524 9 O -0.313 6.313 10 C 0.115 3.885 11 C 0.049 3.951 12 C -0.484 4.484 13 H 0.063 0.937 14 C 0.077 3.923 15 N -0.881 5.881 16 Si 0.891 3.109 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.194 4.194 21 C -0.209 4.209 22 C -0.096 4.096 23 C -0.149 4.149 24 C -0.153 4.153 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.410 0.590 29 H 0.028 0.972 30 H 0.113 0.887 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.020 2.056 10.176 13.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.423 6.423 4 N -0.368 5.368 5 C 0.046 3.954 6 H 0.137 0.863 7 C 0.302 3.698 8 O -0.415 6.415 9 O -0.226 6.226 10 C 0.042 3.958 11 C 0.049 3.951 12 C -0.521 4.521 13 H 0.081 0.919 14 C -0.126 4.126 15 N -0.518 5.518 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.232 4.232 21 C -0.246 4.246 22 C -0.116 4.116 23 C -0.206 4.206 24 C -0.210 4.210 25 H 0.113 0.887 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.247 0.753 29 H 0.046 0.954 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.958 2.530 10.019 13.042 hybrid contribution -0.158 0.096 -0.677 0.702 sum -8.116 2.626 9.342 12.650 Atomic orbital electron populations 1.21858 0.91328 1.04795 1.04966 1.20807 0.90648 0.83156 0.75351 1.90732 1.70711 1.31283 1.49586 1.45911 1.05875 1.09786 1.75234 1.20503 0.81089 0.95954 0.97830 0.86323 1.23165 0.82118 0.89413 0.75143 1.90565 1.57513 1.39119 1.54340 1.86532 1.27158 1.38357 1.70557 1.22843 0.96654 0.78245 0.98053 1.18870 0.86738 0.94437 0.95072 1.20384 1.01705 1.17810 1.12187 0.91889 1.24911 0.94573 0.96440 0.96698 1.69811 1.16574 1.36876 1.28504 0.86580 0.77775 0.84000 0.79786 1.20775 1.20993 1.19427 1.22981 1.05112 0.94275 1.00825 1.22967 1.02856 1.05764 0.93003 1.21401 0.97414 1.00167 0.92582 1.21877 1.01057 0.97908 0.99791 1.21911 0.93044 1.04230 1.01843 0.88700 0.90089 0.88827 0.75327 0.95417 0.86951 0.92724 0.91536 0.89768 0.90268 0.91355 0.89490 0.92412 0.92246 0.92602 0.90966 0.91602 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.30 36.00 0.37 -1.10 16 2 C 0.51 6.99 7.90 -10.99 -0.09 6.91 16 3 O -0.55 -9.60 16.76 5.56 0.09 -9.50 16 4 N -0.71 -10.00 4.29 -54.93 -0.24 -10.23 16 5 C 0.15 2.53 2.32 -69.08 -0.16 2.37 16 6 H 0.12 2.16 7.58 -51.93 -0.39 1.77 16 7 C 0.46 9.09 5.48 36.01 0.20 9.29 16 8 O -0.52 -10.92 15.40 -18.75 -0.29 -11.20 16 9 O -0.31 -7.06 8.09 -39.24 -0.32 -7.37 16 10 C 0.11 2.72 4.54 37.16 0.17 2.89 16 11 C 0.05 1.19 2.13 -155.66 -0.33 0.86 16 12 C -0.48 -12.88 8.77 -34.44 -0.30 -13.18 16 13 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16 14 C 0.08 2.07 5.08 -17.82 -0.09 1.97 16 15 N -0.88 -24.21 10.85 55.43 0.60 -23.61 16 16 Si 0.89 21.09 29.57 -169.99 -5.03 16.06 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.19 -4.23 9.96 -26.69 -0.27 -4.49 16 21 C -0.21 -4.37 9.92 -26.69 -0.26 -4.63 16 22 C -0.10 -1.36 2.90 -90.62 -0.26 -1.62 16 23 C -0.15 -1.90 8.78 37.16 0.33 -1.57 16 24 C -0.15 -2.22 8.71 37.16 0.32 -1.90 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.41 5.21 7.74 -40.82 -0.32 4.89 16 29 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 30 H 0.11 2.98 6.07 -51.93 -0.32 2.67 16 31 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.08 1.83 8.14 -51.92 -0.42 1.41 16 34 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.84 7.02 -51.93 -0.36 0.47 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.65 7.61 -51.93 -0.40 0.26 16 40 H 0.07 1.20 6.23 -51.93 -0.32 0.88 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -30.23 349.10 -7.01 -37.25 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.72 Total: 7.55 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.38 Total: -4.20 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.37 Total: -33.84 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.51 Total: -28.08 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.23 -7.01 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744276014.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.951 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds