Wall clock time and date at job start Tue Mar 31 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99686 * 2 1 4 4 H 1.48497 * 109.47358 * 269.99842 * 3 2 1 5 5 H 1.48499 * 109.47340 * 30.00184 * 3 2 1 6 6 H 1.48505 * 109.46835 * 150.00205 * 3 2 1 7 7 C 1.38948 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99485 * 359.97438 * 7 2 1 9 9 N 1.37097 * 120.00315 * 180.02562 * 7 2 1 10 10 C 1.34771 * 119.99880 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00217 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00077 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.47355 * 180.02562 * 12 10 9 14 14 C 1.34233 * 117.00093 * 179.97438 * 13 12 10 15 15 O 1.20831 * 119.99968 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00088 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47279 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47400 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47126 * 180.02562 * 18 17 16 20 20 C 1.54961 * 110.92578 * 71.54077 * 19 18 17 21 21 C 1.54270 * 104.16191 * 156.29427 * 20 19 18 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 0.96998 * 119.99716 * 359.97438 * 1 2 3 25 25 H 0.97002 * 119.99639 * 359.97438 * 9 7 2 26 26 H 1.09001 * 109.47209 * 59.99668 * 12 10 9 27 27 H 1.09004 * 109.47203 * 299.99985 * 12 10 9 28 28 H 1.08999 * 109.47508 * 60.00041 * 16 14 13 29 29 H 1.09000 * 109.47087 * 299.99719 * 16 14 13 30 30 H 1.09001 * 109.47169 * 60.00300 * 17 16 14 31 31 H 1.09000 * 109.46864 * 299.99895 * 17 16 14 32 32 H 1.08995 * 109.46922 * 59.99869 * 18 17 16 33 33 H 1.09000 * 109.47141 * 299.99866 * 18 17 16 34 34 H 1.09001 * 110.67554 * 308.23161 * 19 18 17 35 35 H 1.08997 * 110.47708 * 37.64024 * 20 19 18 36 36 H 1.09002 * 110.53308 * 274.97416 * 20 19 18 37 37 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 38 38 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 39 39 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 40 40 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 41 41 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 42 42 H 1.09000 * 110.48806 * 264.79985 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 1.4689 -2.1386 -0.0005 9 7 3.3800 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3704 0.0000 13 8 6.0448 -3.7393 -0.0006 14 6 7.3755 -3.9152 -0.0012 15 8 8.1116 -2.9569 -0.0017 16 6 7.9516 -5.3077 -0.0025 17 6 9.4795 -5.2277 -0.0036 18 6 10.0644 -6.6415 -0.0042 19 6 11.5922 -6.5613 -0.0047 20 6 12.1213 -6.0751 1.3682 21 6 13.5656 -6.6139 1.4284 22 6 13.6260 -7.8201 0.4750 23 6 12.2159 -7.9735 -0.1316 24 1 -0.4850 0.8401 0.0004 25 1 3.8649 -0.3631 0.0004 26 1 5.9241 -1.8565 0.8899 27 1 5.9241 -1.8566 -0.8900 28 1 7.6154 -5.8393 -0.8927 29 1 7.6160 -5.8405 0.8873 30 1 9.8161 -4.6961 0.8864 31 1 9.8147 -4.6950 -0.8936 32 1 9.7277 -7.1735 -0.8940 33 1 9.7291 -7.1737 0.8859 34 1 11.9432 -5.9107 -0.8057 35 1 11.5237 -6.4945 2.1775 36 1 12.1182 -4.9861 1.4152 37 1 13.8048 -6.9285 2.4442 38 1 14.2651 -5.8444 1.1017 39 1 14.3542 -7.6357 -0.3149 40 1 13.8953 -8.7200 1.0279 41 1 12.2811 -8.2690 -1.1787 42 1 11.6345 -8.7017 0.4339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745601339.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:11 Heat of formation + Delta-G solvation = -154.952641 kcal Electronic energy + Delta-G solvation = -21290.129042 eV Core-core repulsion = 17848.023920 eV Total energy + Delta-G solvation = -3442.105122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40273 -38.81221 -38.31323 -36.29895 -34.62831 -34.05244 -31.79602 -30.63418 -29.02577 -28.58799 -26.13079 -24.39428 -22.44130 -20.77393 -20.23115 -20.19951 -19.62817 -18.57228 -17.56162 -16.71941 -16.30472 -16.16346 -15.53151 -15.28049 -15.15883 -14.79790 -14.18756 -13.72616 -13.64711 -13.44567 -12.97834 -12.92147 -12.61958 -12.29464 -12.21204 -12.08264 -11.72995 -11.63414 -11.39346 -11.25997 -11.14280 -10.94951 -10.83763 -10.74949 -10.64811 -10.63968 -10.48024 -10.38668 -10.04410 -9.67069 -8.65491 -8.28707 -6.38767 -3.91605 2.29442 2.68561 2.99170 3.03815 3.12382 3.56618 4.04164 4.19265 4.28896 4.35159 4.43348 4.70002 4.75925 4.86345 5.05011 5.09910 5.11959 5.16054 5.23389 5.29115 5.32580 5.35232 5.41893 5.49480 5.51242 5.56748 5.61083 5.63961 5.69080 5.70103 5.78785 5.87067 5.93922 6.02689 6.09041 6.17575 6.58512 7.45626 7.85371 8.01801 8.48670 8.84316 9.30565 9.66633 10.73524 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.050258 B = 0.002256 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.990069 B =12408.092021 C =12799.659603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.448 3.552 11 O -0.558 6.558 12 C 0.058 3.942 13 O -0.327 6.327 14 C 0.457 3.543 15 O -0.517 6.517 16 C -0.113 4.113 17 C -0.108 4.108 18 C -0.112 4.112 19 C -0.093 4.093 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.121 4.121 24 H 0.275 0.725 25 H 0.373 0.627 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.758 -11.167 0.722 28.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.233 3.767 11 O -0.439 6.439 12 C -0.020 4.020 13 O -0.241 6.241 14 C 0.300 3.700 15 O -0.407 6.407 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.149 4.149 19 C -0.111 4.111 20 C -0.159 4.159 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.159 4.159 24 H 0.086 0.914 25 H 0.206 0.794 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.317 -11.459 0.725 27.799 hybrid contribution 0.590 1.640 0.025 1.743 sum 25.907 -9.818 0.749 27.715 Atomic orbital electron populations 1.69616 1.05641 1.27740 1.48447 1.25041 0.95530 0.98064 0.97297 0.86674 0.79852 0.83859 0.79089 1.19409 1.19950 1.19368 1.19427 0.78700 0.96873 1.48629 0.86016 1.42041 1.07635 1.05724 1.66616 1.19224 0.87011 0.85110 0.85401 1.90604 1.69084 1.30732 1.53503 1.22722 0.95034 0.80764 1.03488 1.86571 1.23527 1.31024 1.82981 1.23882 0.80858 0.92945 0.72272 1.90644 1.60677 1.43273 1.46058 1.21417 0.96472 0.91085 1.06119 1.21455 0.91873 0.97373 1.03870 1.21598 0.94439 0.96445 1.02450 1.22156 0.94595 0.96562 0.97785 1.22470 0.95611 1.00665 0.97175 1.22140 0.97297 0.97539 0.99450 1.22128 0.97339 0.98200 0.98674 1.22423 0.95751 0.97011 1.00688 0.91401 0.79394 0.89507 0.89503 0.87574 0.87585 0.90902 0.91028 0.91550 0.91528 0.90551 0.91500 0.91550 0.92059 0.92034 0.92063 0.92071 0.91800 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.96 55.50 0.77 -24.45 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 7 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 8 H 0.12 3.90 7.39 -52.48 -0.39 3.51 16 9 N -0.58 -13.89 5.09 -10.96 -0.06 -13.95 16 10 C 0.45 10.48 7.86 -10.99 -0.09 10.40 16 11 O -0.56 -15.46 16.08 -14.12 -0.23 -15.69 16 12 C 0.06 1.05 5.94 36.00 0.21 1.26 16 13 O -0.33 -5.86 9.75 -45.91 -0.45 -6.31 16 14 C 0.46 6.75 7.96 36.00 0.29 7.03 16 15 O -0.52 -8.55 15.73 -18.75 -0.30 -8.85 16 16 C -0.11 -1.14 5.81 -27.89 -0.16 -1.30 16 17 C -0.11 -0.96 4.40 -26.73 -0.12 -1.07 16 18 C -0.11 -0.77 4.72 -26.73 -0.13 -0.90 16 19 C -0.09 -0.64 2.86 -88.59 -0.25 -0.89 16 20 C -0.12 -0.85 5.71 -25.03 -0.14 -1.00 16 21 C -0.13 -0.81 6.80 -25.61 -0.17 -0.99 16 22 C -0.13 -0.77 6.80 -25.62 -0.17 -0.94 16 23 C -0.12 -0.76 6.27 -25.07 -0.16 -0.91 16 24 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 26 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 27 H 0.09 1.40 8.13 -51.93 -0.42 0.98 16 28 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.70 7.62 -51.93 -0.40 0.31 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.44 8.00 -51.93 -0.42 0.02 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.47 7.95 -51.93 -0.41 0.05 16 36 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -33.13 348.70 -7.78 -40.91 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.92 Total: 5.67 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -1.14 Total: 2.98 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.72 Total: -38.39 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.97 Total: -30.84 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.13 -7.78 -40.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745601339.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.046 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds