Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 115.54990 * 2 1 4 4 C 1.53003 * 117.49910 * 145.67165 * 2 1 3 5 5 C 1.50700 * 117.49902 * 359.97438 * 4 2 1 6 6 O 1.20825 * 120.00291 * 149.43513 * 5 4 2 7 7 O 1.34231 * 119.99793 * 329.43257 * 5 4 2 8 8 C 1.45196 * 116.99806 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.47032 * 179.97438 * 8 7 5 10 10 O 1.21278 * 119.99912 * 0.02562 * 9 8 7 11 11 N 1.34783 * 119.99902 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99659 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47018 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99853 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00194 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00047 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00078 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47244 * 89.99967 * 17 15 13 19 19 H 1.48504 * 109.47059 * 209.99958 * 17 15 13 20 20 H 1.48499 * 109.47288 * 329.99743 * 17 15 13 21 21 C 1.53001 * 60.03088 * 107.47651 * 4 2 1 22 22 C 1.53009 * 117.49836 * 107.50149 * 21 4 2 23 23 C 1.52995 * 117.49984 * 252.51874 * 21 4 2 24 24 H 1.09000 * 109.47233 * 320.83912 * 1 2 3 25 25 H 1.09003 * 109.47466 * 80.83765 * 1 2 3 26 26 H 1.09003 * 109.46966 * 200.84001 * 1 2 3 27 27 H 1.09004 * 109.47082 * 154.28070 * 3 2 1 28 28 H 1.09006 * 109.47377 * 274.27919 * 3 2 1 29 29 H 1.09000 * 109.47418 * 34.28173 * 3 2 1 30 30 H 1.09004 * 117.49838 * 214.97990 * 4 2 1 31 31 H 1.09002 * 109.47035 * 299.99802 * 8 7 5 32 32 H 1.08999 * 109.47518 * 59.99833 * 8 7 5 33 33 H 0.96993 * 119.99567 * 0.02562 * 11 9 8 34 34 H 1.08989 * 109.47612 * 300.00104 * 12 11 9 35 35 H 1.09006 * 109.47019 * 60.00747 * 12 11 9 36 36 H 0.97003 * 120.00272 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.46719 * 111.38549 * 22 21 4 38 38 H 1.08994 * 109.47239 * 231.39041 * 22 21 4 39 39 H 1.09001 * 109.46514 * 351.39274 * 22 21 4 40 40 H 1.08996 * 109.47279 * 8.61187 * 23 21 4 41 41 H 1.09003 * 109.47269 * 128.61224 * 23 21 4 42 42 H 1.09006 * 109.47639 * 248.61362 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 2.2364 -1.1208 0.7654 5 6 1.3720 -2.1399 1.4620 6 8 1.7632 -3.2755 1.5932 7 8 0.1674 -1.7859 1.9368 8 6 -0.6105 -2.8191 2.5968 9 6 -1.9226 -2.2408 3.0606 10 8 -2.1772 -1.0731 2.8547 11 7 -2.8136 -3.0217 3.7034 12 6 -4.0888 -2.4594 4.1547 13 6 -4.8968 -3.5320 4.8386 14 1 -4.4999 -4.5324 4.9283 15 6 -6.1427 -3.2363 5.3496 16 7 -6.6263 -2.0182 5.2398 17 14 -7.1439 -4.5657 6.1979 18 1 -6.8253 -4.5758 7.6483 19 1 -8.5912 -4.2905 6.0109 20 1 -6.8113 -5.8876 5.6088 21 6 2.2366 -1.1221 -0.7647 22 6 3.5494 -0.7780 -1.4713 23 6 1.3588 -2.1576 -1.4703 24 1 -0.3634 0.7968 0.6490 25 1 -0.3634 0.1636 -1.0146 26 1 -0.3633 -0.9605 0.3656 27 1 3.1819 1.3088 0.4460 28 1 2.2774 1.7413 -1.0248 29 1 1.5805 2.0744 0.5788 30 1 3.1715 -0.8748 1.2686 31 1 -0.7990 -3.6342 1.8980 32 1 -0.0568 -3.1978 3.4559 33 1 -2.6100 -3.9557 3.8677 34 1 -3.8996 -1.6451 4.8541 35 1 -4.6427 -2.0797 3.2961 36 1 -7.5030 -1.8102 5.5990 37 1 3.9368 -1.6661 -1.9706 38 1 3.3709 0.0046 -2.2085 39 1 4.2757 -0.4277 -0.7379 40 1 0.7294 -2.6610 -0.7365 41 1 0.7296 -1.6588 -2.2075 42 1 1.9920 -2.8909 -1.9698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746082709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = -110.508595 kcal Electronic energy + Delta-G solvation = -22556.321606 eV Core-core repulsion = 19116.143722 eV Total energy + Delta-G solvation = -3440.177884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14818 -39.18132 -38.41519 -36.35086 -34.24900 -32.41801 -31.40159 -29.69554 -28.75625 -28.29175 -26.61849 -26.42258 -23.37028 -22.38984 -20.16424 -19.91086 -18.13929 -17.52900 -17.25593 -16.88849 -16.19918 -15.44578 -15.16323 -15.07785 -14.84937 -14.37062 -14.05071 -13.62085 -13.49442 -12.95242 -12.79749 -12.77016 -12.67289 -12.51184 -12.46601 -12.12217 -12.00430 -11.94244 -11.81050 -11.70102 -11.08824 -11.01535 -10.91788 -10.70712 -10.45046 -10.35259 -9.96763 -9.57754 -9.44939 -9.17025 -8.79039 -7.99276 -6.20600 -4.28001 2.04439 2.39608 3.17687 3.22443 3.28458 3.29458 3.31224 3.94643 4.22407 4.28864 4.32216 4.45360 4.72630 4.89609 4.96306 5.15564 5.18864 5.22159 5.25881 5.31641 5.34312 5.42599 5.51605 5.57151 5.60159 5.62818 5.78575 5.82638 5.90340 5.94425 5.99369 6.17091 6.33360 6.56318 7.21690 7.30385 7.44921 7.58600 7.70552 7.91089 8.49490 8.70361 8.95838 9.38490 10.89532 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036363 B = 0.003044 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.835440 B = 9195.623593 C = 9566.707396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.155 4.155 5 C 0.494 3.506 6 O -0.508 6.508 7 O -0.316 6.316 8 C 0.040 3.960 9 C 0.500 3.500 10 O -0.532 6.532 11 N -0.707 5.707 12 C 0.252 3.748 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.120 4.120 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.393 0.607 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.875 2.064 -12.336 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 C -0.172 4.172 4 C -0.174 4.174 5 C 0.337 3.663 6 O -0.396 6.396 7 O -0.231 6.231 8 C -0.037 4.037 9 C 0.283 3.717 10 O -0.409 6.409 11 N -0.357 5.357 12 C 0.132 3.868 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.092 4.092 22 C -0.170 4.170 23 C -0.177 4.177 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.225 0.775 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.570 2.690 -12.373 22.476 hybrid contribution -0.433 -1.387 0.839 1.678 sum 18.137 1.303 -11.534 21.533 Atomic orbital electron populations 1.21696 0.90052 1.05164 1.01502 1.21897 0.96155 0.90747 1.00503 1.21370 0.99930 0.93784 1.02144 1.22532 1.00309 0.99767 0.94799 1.22686 0.80149 0.87898 0.75533 1.90661 1.72858 1.21315 1.54741 1.86754 1.28450 1.41216 1.66654 1.22914 0.91919 0.90211 0.98673 1.19865 0.84677 0.87246 0.79925 1.90706 1.77795 1.16325 1.56085 1.46367 1.19444 1.13280 1.56640 1.19163 0.77701 0.94790 0.95181 1.21209 1.02115 0.96320 1.38712 0.91792 1.24948 0.97388 0.95841 0.95794 1.69971 1.18453 1.18976 1.44799 0.86396 0.79193 0.81469 0.79748 1.20423 1.20965 1.19715 1.21839 0.98703 0.99588 0.89088 1.21357 0.93723 1.01851 1.00086 1.21421 0.98824 0.97094 1.00377 0.91136 0.92493 0.89894 0.92393 0.91760 0.91426 0.84050 0.88667 0.88606 0.77472 0.95286 0.95264 0.92368 0.91799 0.91433 0.92053 0.92691 0.91239 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.16 37.16 0.30 -1.28 16 2 C -0.09 -0.96 2.70 -154.47 -0.42 -1.37 16 3 C -0.12 -0.93 8.88 37.15 0.33 -0.60 16 4 C -0.16 -1.73 5.55 -91.77 -0.51 -2.24 16 5 C 0.49 7.03 5.27 36.01 0.19 7.22 16 6 O -0.51 -8.14 16.84 -18.75 -0.32 -8.45 16 7 O -0.32 -4.96 6.45 -45.91 -0.30 -5.26 16 8 C 0.04 0.62 5.94 36.01 0.21 0.83 16 9 C 0.50 9.90 7.91 -10.98 -0.09 9.81 16 10 O -0.53 -12.65 16.50 -14.10 -0.23 -12.89 16 11 N -0.71 -14.54 5.55 -61.47 -0.34 -14.88 16 12 C 0.25 6.55 5.43 -5.20 -0.03 6.52 16 13 C -0.55 -14.57 9.28 -34.44 -0.32 -14.89 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -25.77 13.29 55.43 0.74 -25.03 16 17 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C -0.09 -0.87 2.70 -154.47 -0.42 -1.29 16 22 C -0.11 -0.79 8.88 37.16 0.33 -0.46 16 23 C -0.12 -1.19 8.70 37.16 0.32 -0.86 16 24 H 0.07 0.95 8.00 -51.93 -0.42 0.54 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.21 4.41 -51.93 -0.23 0.98 16 27 H 0.06 0.40 7.78 -51.93 -0.40 0.00 16 28 H 0.06 0.44 8.03 -51.93 -0.42 0.03 16 29 H 0.07 0.57 7.98 -51.93 -0.41 0.16 16 30 H 0.14 1.33 7.96 -51.93 -0.41 0.91 16 31 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 32 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 34 H 0.03 0.83 8.14 -51.94 -0.42 0.41 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 38 H 0.07 0.40 8.03 -51.93 -0.42 -0.01 16 39 H 0.06 0.38 7.78 -51.93 -0.40 -0.02 16 40 H 0.05 0.65 6.04 -51.93 -0.31 0.34 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 LS Contribution 349.26 15.07 5.26 5.26 Total: -1.00 -32.44 349.26 -7.05 -39.50 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -6.66 Total: 3.09 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.18 Total: 3.04 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.40 Total: -39.91 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.84 Total: -26.60 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.44 -7.05 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746082709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.013 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds