Wall clock time and date at job start Tue Mar 31 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.21605 * 2 1 4 4 C 1.53009 * 109.47160 * 300.70032 * 3 2 1 5 5 C 1.50696 * 109.47179 * 179.97438 * 4 3 2 6 6 O 1.20831 * 119.99892 * 0.02562 * 5 4 3 7 7 O 1.34221 * 120.00221 * 180.02562 * 5 4 3 8 8 C 1.45201 * 117.00608 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47459 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47082 * 179.97438 * 9 8 7 11 11 C 1.50704 * 109.47252 * 179.97438 * 10 9 8 12 12 H 1.07993 * 119.99735 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00139 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99771 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 119.99877 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.46871 * 89.99970 * 15 13 11 17 17 H 1.48498 * 109.46944 * 209.99723 * 15 13 11 18 18 H 1.48497 * 109.46957 * 329.99863 * 15 13 11 19 19 C 1.54482 * 110.24937 * 121.92867 * 2 1 3 20 20 C 1.54633 * 101.76156 * 93.58366 * 19 2 1 21 21 C 1.51280 * 104.19839 * 24.80215 * 20 19 2 22 22 O 1.21280 * 124.94580 * 163.77874 * 21 20 19 23 23 N 1.34423 * 110.11287 * 343.74712 * 21 20 19 24 24 H 1.09002 * 109.47153 * 298.06917 * 1 2 3 25 25 H 1.09001 * 109.46832 * 178.07108 * 1 2 3 26 26 H 1.09004 * 109.47261 * 58.07089 * 1 2 3 27 27 H 1.08995 * 109.47432 * 60.70083 * 3 2 1 28 28 H 1.09000 * 109.46999 * 180.70583 * 3 2 1 29 29 H 1.08995 * 109.46990 * 300.00321 * 4 3 2 30 30 H 1.09001 * 109.46625 * 59.99597 * 4 3 2 31 31 H 1.09006 * 109.46486 * 300.00063 * 8 7 5 32 32 H 1.09002 * 109.46775 * 59.99491 * 8 7 5 33 33 H 1.08996 * 109.46999 * 299.99992 * 9 8 7 34 34 H 1.09001 * 109.46690 * 60.00092 * 9 8 7 35 35 H 1.08996 * 109.47437 * 300.00559 * 10 9 8 36 36 H 1.09009 * 109.46940 * 60.00312 * 10 9 8 37 37 H 0.96999 * 119.99729 * 180.02562 * 14 13 11 38 38 H 1.08999 * 110.97153 * 211.70356 * 19 2 1 39 39 H 1.08993 * 110.96474 * 335.43263 * 19 2 1 40 40 H 1.09004 * 110.48006 * 143.48107 * 20 19 2 41 41 H 1.08995 * 110.48488 * 265.98865 * 20 19 2 42 42 H 0.97000 * 124.35011 * 179.59421 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 6 1.5438 2.1689 -1.2404 5 6 2.0640 3.5832 -1.2401 6 8 2.7742 3.9655 -0.3403 7 8 1.7386 4.4183 -2.2392 8 6 2.2760 5.7656 -2.1740 9 6 1.7996 6.5642 -3.3889 10 6 2.3654 7.9840 -3.3197 11 6 1.8966 8.7704 -4.5168 12 1 1.2586 8.3043 -5.2530 13 6 2.2823 10.0851 -4.6721 14 7 1.8728 10.7714 -5.7164 15 14 3.3865 10.8911 -3.3990 16 1 4.8080 10.6888 -3.7776 17 1 3.0924 12.3454 -3.3384 18 1 3.1366 10.2797 -2.0690 19 6 2.0646 -0.7665 1.2301 20 6 2.2625 -2.1879 0.6542 21 6 2.4509 -1.9640 -0.8300 22 8 2.9074 -2.7793 -1.6032 23 7 2.0379 -0.7301 -1.1675 24 1 -0.3633 0.4836 0.9068 25 1 -0.3633 -1.0271 -0.0346 26 1 -0.3634 0.5435 -0.8722 27 1 1.7124 1.9505 0.8961 28 1 3.1485 1.4216 -0.0127 29 1 1.8901 1.6541 -2.1365 30 1 0.4540 2.1829 -1.2278 31 1 1.9293 6.2512 -1.2617 32 1 3.3651 5.7225 -2.1712 33 1 2.1458 6.0787 -4.3013 34 1 0.7104 6.6072 -3.3910 35 1 2.0188 8.4692 -2.4073 36 1 3.4546 7.9413 -3.3174 37 1 2.1445 11.6962 -5.8258 38 1 3.0121 -0.3476 1.5692 39 1 1.3312 -0.7703 2.0363 40 1 3.1486 -2.6541 1.0852 41 1 1.3810 -2.8011 0.8407 42 1 2.0713 -0.3687 -2.0670 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751530100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:58 Heat of formation + Delta-G solvation = -149.888383 kcal Electronic energy + Delta-G solvation = -21649.098864 eV Core-core repulsion = 18207.213344 eV Total energy + Delta-G solvation = -3441.885520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.18963 -40.29836 -37.75069 -36.64190 -34.13053 -33.58924 -31.88735 -31.82747 -29.96970 -27.77740 -26.54246 -24.27566 -22.86448 -21.28530 -21.05019 -20.38978 -19.98129 -17.90656 -17.11135 -16.86281 -16.81955 -16.48709 -16.04277 -15.45470 -14.91958 -14.53488 -14.24570 -14.13796 -13.95796 -13.43115 -13.30697 -13.08006 -12.81067 -12.76291 -12.69594 -12.32378 -12.14682 -11.91001 -11.56405 -11.39663 -11.17248 -11.09727 -11.00058 -10.64201 -10.48725 -10.23705 -10.03808 -9.84913 -9.75959 -9.57782 -9.28311 -8.59787 -6.09870 -4.09124 2.17818 2.23261 2.69985 2.90896 3.27403 3.35119 3.38064 3.76462 3.93481 4.15824 4.37614 4.40125 4.42598 4.58560 4.70472 4.78053 4.99019 4.99776 5.13649 5.21829 5.23243 5.28858 5.33444 5.40296 5.43148 5.43645 5.50630 5.62239 5.77087 5.81223 6.30096 6.34085 6.41142 6.61804 6.63225 6.75799 7.16899 7.28320 7.68552 7.78968 7.87370 8.46618 8.94261 9.51501 11.03272 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.040272 B = 0.002363 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.112601 B =11846.191443 C =12028.890231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 C -0.110 4.110 4 C -0.119 4.119 5 C 0.457 3.543 6 O -0.513 6.513 7 O -0.357 6.357 8 C 0.066 3.934 9 C -0.102 4.102 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.074 0.926 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.520 3.480 22 O -0.537 6.537 23 N -0.723 5.723 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.019 0.981 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.771 -24.450 16.135 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.069 3.931 3 C -0.149 4.149 4 C -0.157 4.157 5 C 0.300 3.700 6 O -0.402 6.402 7 O -0.273 6.273 8 C -0.007 4.007 9 C -0.139 4.139 10 C -0.048 4.048 11 C -0.560 4.560 12 H 0.092 0.908 13 C -0.134 4.134 14 N -0.539 5.539 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.161 4.161 20 C -0.197 4.197 21 C 0.306 3.694 22 O -0.413 6.413 23 N -0.379 5.379 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.306 -24.593 16.005 29.433 hybrid contribution 0.637 0.964 0.180 1.170 sum -1.669 -23.629 16.185 28.689 Atomic orbital electron populations 1.22296 0.93419 1.02985 1.03431 1.21080 0.94434 0.91785 0.85754 1.21775 1.02383 0.92634 0.98070 1.21466 1.03633 0.89455 1.01146 1.23544 0.78109 0.88609 0.79753 1.90665 1.35368 1.77726 1.36456 1.86500 1.68911 1.25180 1.46735 1.23506 0.98576 0.77173 1.01453 1.21561 1.01556 0.96092 0.94727 1.19521 0.96017 0.91052 0.98208 1.21048 1.31690 0.96307 1.06987 0.90800 1.25021 0.95841 0.97200 0.95374 1.69904 1.45503 1.09980 1.28563 0.86778 0.81246 0.78593 0.82684 1.20203 1.21257 1.18996 1.22713 1.03105 0.93713 0.96583 1.22361 1.05203 0.98731 0.93384 1.20885 0.76007 0.81453 0.91027 1.90775 1.45343 1.47588 1.57619 1.46474 1.64249 1.15815 1.11388 0.90663 0.91821 0.91355 0.89029 0.89926 0.88102 0.87160 0.91510 0.91542 0.91541 0.91510 0.96289 0.96735 0.92618 0.89436 0.88764 0.87983 0.87764 0.75117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 8.47 37.16 0.31 -0.31 16 2 C 0.16 0.76 0.87 -130.90 -0.11 0.64 16 3 C -0.11 -0.70 3.71 -26.73 -0.10 -0.80 16 4 C -0.12 -0.89 5.32 -27.88 -0.15 -1.04 16 5 C 0.46 5.81 7.96 36.00 0.29 6.10 16 6 O -0.51 -7.92 15.73 -18.75 -0.30 -8.21 16 7 O -0.36 -5.33 10.22 -39.23 -0.40 -5.73 16 8 C 0.07 1.11 5.47 37.16 0.20 1.31 16 9 C -0.10 -1.98 5.53 -26.73 -0.15 -2.12 16 10 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 11 C -0.52 -14.73 9.66 -34.44 -0.33 -15.07 16 12 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 15 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 19 C -0.12 -0.47 6.21 -25.09 -0.16 -0.62 16 20 C -0.16 -0.80 6.86 -26.74 -0.18 -0.98 16 21 C 0.52 4.64 8.43 -10.86 -0.09 4.55 16 22 O -0.54 -7.33 18.03 5.56 0.10 -7.23 16 23 N -0.72 -4.83 5.39 -46.61 -0.25 -5.08 16 24 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.27 6.39 -51.93 -0.33 -0.06 16 27 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.10 0.63 6.90 -51.93 -0.36 0.27 16 30 H 0.11 0.63 6.43 -51.93 -0.33 0.30 16 31 H 0.07 1.11 8.13 -51.93 -0.42 0.68 16 32 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.33 7.57 -51.92 -0.39 -0.06 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.09 0.33 7.91 -51.93 -0.41 -0.08 16 39 H 0.09 0.19 7.89 -51.93 -0.41 -0.22 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.41 2.59 7.69 -40.82 -0.31 2.27 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -34.93 345.15 -6.95 -41.89 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -6.73 Total: -4.01 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.68 Total: -6.86 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.52 Total: -31.89 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.60 Total: -21.17 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.93 -6.95 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751530100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.001 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds