Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47327 * 2 1 4 4 C 1.50696 * 109.47581 * 59.99136 * 3 2 1 5 5 O 1.20833 * 119.99595 * 0.02562 * 4 3 2 6 6 O 1.34224 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.45206 * 117.00077 * 180.02562 * 6 4 3 8 8 C 1.50699 * 109.47021 * 180.02562 * 7 6 4 9 9 O 1.21297 * 119.99980 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.37097 * 119.99944 * 180.02562 * 10 8 7 12 12 H 1.08003 * 120.00055 * 359.97438 * 11 10 8 13 13 C 1.38948 * 119.99682 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00492 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99897 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47616 * 59.99670 * 15 13 11 17 17 H 1.48496 * 109.47325 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47000 * 299.99807 * 15 13 11 19 19 C 1.53002 * 109.46829 * 119.99257 * 2 1 3 20 20 C 1.53006 * 109.47121 * 60.00046 * 19 2 1 21 21 C 1.53007 * 109.46751 * 60.00157 * 20 19 2 22 22 C 1.52998 * 109.46829 * 299.99795 * 21 20 19 23 23 C 1.52996 * 109.47228 * 60.00433 * 22 21 20 24 24 H 1.09001 * 109.46747 * 60.00918 * 1 2 3 25 25 H 1.08998 * 109.47013 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47539 * 300.00870 * 1 2 3 27 27 H 1.09009 * 109.46302 * 299.99541 * 3 2 1 28 28 H 1.08995 * 109.47159 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47070 * 300.00162 * 7 6 4 30 30 H 1.09001 * 109.46626 * 60.00180 * 7 6 4 31 31 H 0.96996 * 119.99844 * 359.97438 * 10 8 7 32 32 H 0.97002 * 120.00294 * 179.97438 * 14 13 11 33 33 H 1.09003 * 109.47318 * 179.97438 * 19 2 1 34 34 H 1.09003 * 109.47689 * 300.00443 * 19 2 1 35 35 H 1.08991 * 109.47292 * 300.00300 * 20 19 2 36 36 H 1.08997 * 109.47250 * 179.97438 * 20 19 2 37 37 H 1.09005 * 109.46603 * 180.02562 * 21 20 19 38 38 H 1.08991 * 109.47105 * 60.00029 * 21 20 19 39 39 H 1.09003 * 109.47503 * 300.00454 * 22 21 20 40 40 H 1.09003 * 109.47072 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47638 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47459 * 60.00049 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5376 2.1530 1.2303 5 8 0.8432 1.5657 2.0258 6 8 1.8615 3.4382 1.4424 7 6 1.3427 4.0584 2.6485 8 6 1.8062 5.4908 2.7160 9 8 2.5053 5.9442 1.8346 10 7 1.4446 6.2677 3.7563 11 6 1.8658 7.5710 3.8175 12 1 2.4877 7.9749 3.0323 13 6 1.4926 8.3720 4.8897 14 7 0.7355 7.8807 5.8448 15 14 2.0659 10.1480 4.9727 16 1 1.5678 10.8851 3.7837 17 1 1.5360 10.7820 6.2066 18 1 3.5502 10.1885 4.9942 19 6 2.0399 -0.7211 1.2494 20 6 1.5299 -2.1637 1.2495 21 6 2.0400 -2.8850 0.0003 22 6 1.5301 -2.1639 -1.2489 23 6 2.0401 -0.7214 -1.2491 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 1.6767 1.9562 -0.8901 28 1 3.1300 1.4424 0.0005 29 1 0.2532 4.0298 2.6320 30 1 1.7073 3.5166 3.5212 31 1 0.8858 5.9050 4.4613 32 1 0.4753 8.4399 6.5935 33 1 3.1300 -0.7216 1.2492 34 1 1.6765 -0.2073 2.1394 35 1 0.4400 -2.1637 1.2494 36 1 1.8935 -2.6775 2.1393 37 1 1.6763 -3.9126 0.0002 38 1 3.1299 -2.8850 0.0004 39 1 0.4400 -2.1638 -1.2490 40 1 1.8931 -2.6780 -2.1389 41 1 1.6772 -0.2077 -2.1393 42 1 3.1301 -0.7214 -1.2491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753539210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = -148.716343 kcal Electronic energy + Delta-G solvation = -22497.159381 eV Core-core repulsion = 19055.324684 eV Total energy + Delta-G solvation = -3441.834696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83565 -39.17811 -38.02067 -36.07111 -33.99186 -33.37814 -31.37579 -30.90490 -29.16574 -27.59177 -26.79610 -24.56685 -22.84907 -22.02970 -20.41935 -19.56741 -18.52196 -18.04897 -17.44482 -16.45733 -16.23874 -15.63332 -15.45029 -14.82148 -14.69217 -14.44934 -14.14831 -13.99944 -13.77395 -13.17118 -13.03275 -12.61720 -12.43186 -12.17726 -11.93639 -11.85559 -11.71029 -11.60989 -11.58616 -11.13934 -11.10295 -11.03214 -10.65708 -10.48711 -10.34128 -10.29540 -10.21686 -10.17936 -9.67198 -9.58973 -8.50727 -8.07686 -6.49363 -3.91454 2.37034 2.79436 3.15841 3.22993 3.27959 3.75023 4.12019 4.38102 4.49687 4.52965 4.76165 4.89769 5.00294 5.07066 5.15702 5.20327 5.22175 5.29068 5.38555 5.42103 5.49405 5.50392 5.58042 5.65280 5.72024 5.80159 5.84196 5.86180 5.92825 5.98978 6.06037 6.10597 6.17743 6.20802 6.35434 6.44835 6.83327 7.48030 7.90006 8.01044 8.49599 9.07684 9.40193 9.90417 10.67849 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.051057 B = 0.002787 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.270648 B =10044.872825 C =10291.254309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.045 4.045 3 C -0.106 4.106 4 C 0.458 3.542 5 O -0.507 6.507 6 O -0.328 6.328 7 C 0.061 3.939 8 C 0.438 3.562 9 O -0.577 6.577 10 N -0.553 5.553 11 C -0.303 4.303 12 H 0.105 0.895 13 C 0.025 3.975 14 N -0.898 5.898 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.108 4.108 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 -19.356 -10.042 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.045 4.045 3 C -0.144 4.144 4 C 0.302 3.698 5 O -0.397 6.397 6 O -0.242 6.242 7 C -0.017 4.017 8 C 0.223 3.777 9 O -0.461 6.461 10 N -0.191 5.191 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.146 4.146 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.121 -19.089 -10.199 21.643 hybrid contribution -0.174 0.655 0.692 0.968 sum -0.054 -18.434 -9.507 20.742 Atomic orbital electron populations 1.22227 0.94003 1.02313 1.03043 1.20339 0.96596 0.91644 0.95926 1.21511 1.03261 0.95064 0.94561 1.23765 0.77693 0.80558 0.87776 1.90529 1.35953 1.66391 1.46785 1.86566 1.68801 1.25659 1.43210 1.22711 0.99481 0.93963 0.85510 1.19360 0.86764 0.86304 0.85299 1.90560 1.41374 1.74488 1.39643 1.41704 1.45834 1.11217 1.20296 1.19677 1.29941 0.85818 1.07765 0.87688 1.25308 0.96558 1.00683 0.95198 1.69604 1.35574 1.37819 1.10850 0.85859 0.79106 0.81293 0.77633 1.19750 1.20869 1.19756 1.21875 0.99879 0.95542 0.98798 1.21541 1.01088 0.95648 0.97280 1.21556 1.00628 0.98583 0.94988 1.21550 1.01118 0.95351 0.97646 1.21579 1.00630 0.95537 0.96832 0.93359 0.92185 0.90007 0.87688 0.87744 0.89647 0.89641 0.77170 0.91579 0.92602 0.89181 0.91666 0.92352 0.92444 0.92204 0.91623 0.92250 0.91790 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 7.48 37.16 0.28 -1.39 16 2 C -0.04 -0.45 0.51 -154.51 -0.08 -0.52 16 3 C -0.11 -1.18 4.88 -27.89 -0.14 -1.31 16 4 C 0.46 6.92 7.37 36.00 0.27 7.18 16 5 O -0.51 -8.12 11.10 -18.76 -0.21 -8.33 16 6 O -0.33 -6.09 9.75 -45.89 -0.45 -6.54 16 7 C 0.06 1.17 5.94 36.01 0.21 1.38 16 8 C 0.44 10.65 7.86 -10.99 -0.09 10.57 16 9 O -0.58 -16.18 16.08 -14.12 -0.23 -16.40 16 10 N -0.55 -14.09 5.29 -10.96 -0.06 -14.14 16 11 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 12 H 0.11 3.03 7.16 -52.48 -0.38 2.66 16 13 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 15 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C -0.12 -1.31 4.43 -26.73 -0.12 -1.43 16 20 C -0.12 -1.08 5.65 -26.72 -0.15 -1.23 16 21 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 22 C -0.12 -0.89 5.65 -26.73 -0.15 -1.04 16 23 C -0.11 -0.87 4.73 -26.73 -0.13 -1.00 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 26 H 0.08 1.05 5.52 -51.93 -0.29 0.77 16 27 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 30 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 31 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.17 5.52 -51.93 -0.29 0.88 16 35 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -31.16 331.52 -7.13 -38.29 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.40 Total: 7.70 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.49 Total: 2.14 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.67 Total: -37.60 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.88 Total: -31.27 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.16 -7.13 -38.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753539210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.427 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds