Wall clock time and date at job start Tue Mar 31 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 8 8 H 1.09001 * 109.47375 * 59.99966 * 7 6 5 9 9 C 1.50696 * 109.46910 * 180.02562 * 7 6 5 10 10 O 1.20831 * 120.00131 * 119.99917 * 9 7 6 11 11 O 1.34230 * 120.00181 * 299.99410 * 9 7 6 12 12 C 1.45198 * 117.00175 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47189 * 180.02562 * 12 11 9 14 14 O 1.21297 * 120.00104 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00549 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00365 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00436 * 0.02562 * 16 15 13 18 18 C 1.38951 * 119.99940 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00009 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00034 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46842 * 89.99870 * 20 18 16 22 22 H 1.48501 * 109.47299 * 209.99906 * 20 18 16 23 23 H 1.48498 * 109.47298 * 330.00239 * 20 18 16 24 24 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 25 25 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 26 26 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 27 27 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 30 30 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 31 31 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 34 34 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.47002 * 299.99574 * 6 5 4 36 36 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47035 * 300.00187 * 12 11 9 38 38 H 1.08995 * 109.47220 * 60.00495 * 12 11 9 39 39 H 0.97001 * 119.99230 * 359.97438 * 15 13 12 40 40 H 0.97003 * 120.00427 * 180.02562 * 19 18 16 41 41 H 1.08992 * 109.47554 * 299.99692 * 24 2 1 42 42 H 1.09004 * 109.47108 * 59.99942 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2489 8 1 3.9334 0.3075 -1.2486 9 6 4.0729 -1.4307 -2.4792 10 8 3.2878 -1.8900 -3.2746 11 8 5.3926 -1.5533 -2.6917 12 6 5.8043 -2.2490 -3.8978 13 6 7.3092 -2.2889 -3.9658 14 8 7.9699 -1.7806 -3.0846 15 7 7.9213 -2.8886 -5.0062 16 6 9.2903 -2.9244 -5.0682 17 1 9.8785 -2.4725 -4.2832 18 6 9.9212 -3.5422 -6.1411 19 7 11.2335 -3.5770 -6.2004 20 14 8.9039 -4.3245 -7.4985 21 1 8.6338 -3.3185 -8.5570 22 1 9.6514 -5.4677 -8.0812 23 1 7.6176 -4.8090 -6.9365 24 6 2.0400 -0.7212 -1.2492 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6765 -0.2074 2.1393 32 1 1.6767 -1.7489 1.2493 33 1 3.9330 0.3071 1.2498 34 1 3.9333 -1.2348 2.1394 35 1 3.7176 -2.4694 0.0002 36 1 5.1705 -1.4408 0.0004 37 1 5.4146 -3.2668 -3.8811 38 1 5.4147 -1.7249 -4.7705 39 1 7.3929 -3.2948 -5.7110 40 1 11.6740 -4.0079 -6.9495 41 1 1.6768 -1.7489 -1.2492 42 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756267882.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:49 Heat of formation + Delta-G solvation = -148.192382 kcal Electronic energy + Delta-G solvation = -22551.879532 eV Core-core repulsion = 19110.067556 eV Total energy + Delta-G solvation = -3441.811976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83689 -39.30446 -38.22550 -36.14451 -34.05413 -33.64898 -31.79490 -31.37872 -28.62786 -27.61204 -26.60123 -24.87463 -23.75297 -21.86441 -20.39476 -19.62817 -18.72456 -18.56521 -17.44213 -16.45398 -16.39982 -15.60554 -15.23278 -14.98266 -14.81300 -14.56286 -14.17579 -13.92739 -13.53356 -13.37934 -13.00887 -12.79279 -12.47397 -12.26306 -12.23047 -12.16150 -12.13364 -11.71581 -11.69335 -11.28520 -11.25577 -11.22875 -10.77296 -10.64608 -10.49821 -10.38549 -10.28733 -10.12398 -10.03489 -9.66841 -8.65074 -8.28549 -6.38665 -3.91442 2.28709 2.67410 2.99297 3.03907 3.12447 3.56875 4.04284 4.27603 4.35264 4.39334 4.59840 4.75952 4.81449 5.02278 5.06055 5.11260 5.12016 5.18665 5.22404 5.37446 5.39781 5.42113 5.50239 5.56629 5.60556 5.67715 5.69574 5.74318 5.78332 5.81157 5.90163 5.98233 6.03018 6.10876 6.12715 6.27238 6.58602 7.45759 7.85901 8.01962 8.48830 8.84474 9.30748 9.66843 10.73677 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.038953 B = 0.003119 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.633965 B = 8974.761688 C = 9385.144708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.149 4.149 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.078 4.078 8 H 0.111 0.889 9 C 0.461 3.539 10 O -0.516 6.516 11 O -0.323 6.323 12 C 0.057 3.943 13 C 0.448 3.552 14 O -0.557 6.557 15 N -0.580 5.580 16 C -0.308 4.308 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.876 5.876 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.268 1.268 24 C -0.092 4.092 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.373 0.627 40 H 0.275 0.725 41 H 0.072 0.928 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.176 5.681 11.179 24.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.206 4.206 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.097 4.097 8 H 0.129 0.871 9 C 0.304 3.696 10 O -0.405 6.405 11 O -0.238 6.238 12 C -0.021 4.021 13 C 0.233 3.767 14 O -0.438 6.438 15 N -0.220 5.220 16 C -0.436 4.436 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.515 5.515 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.194 1.194 24 C -0.129 4.129 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.206 0.794 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.716 5.809 11.407 24.352 hybrid contribution -0.667 -0.825 -1.481 1.822 sum -21.383 4.984 9.927 24.096 Atomic orbital electron populations 1.21844 0.94314 1.01853 1.01745 1.20545 0.95441 0.95597 0.94878 1.22022 1.01667 0.95139 1.01776 1.21646 0.95641 1.00523 0.97005 1.21580 0.95458 1.01220 0.97416 1.21555 1.02132 0.99201 0.92227 1.21132 0.96997 1.00931 0.90657 0.87110 1.23873 0.80805 0.77382 0.87531 1.90636 1.56986 1.46113 1.46723 1.86567 1.24758 1.69575 1.42852 1.22731 0.95844 0.97620 0.85912 1.19212 0.87304 0.85258 0.84912 1.90602 1.65686 1.48646 1.38912 1.42042 1.07812 1.51370 1.20820 1.19424 0.79078 1.35645 1.09458 0.86016 1.25035 0.95673 0.97432 0.97755 1.69612 1.07371 1.42961 1.31537 0.86680 0.80145 0.80097 0.82590 1.19411 1.19954 1.19361 1.21512 0.91806 1.01821 0.97795 0.92590 0.92565 0.92605 0.91833 0.92598 0.92598 0.91830 0.91828 0.91195 0.91368 0.91421 0.89827 0.89553 0.89532 0.79406 0.91399 0.90937 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.47 37.16 0.31 -0.65 16 2 C -0.06 -0.50 0.77 -154.51 -0.12 -0.62 16 3 C -0.15 -1.09 7.78 37.16 0.29 -0.80 16 4 C -0.11 -0.82 4.73 -26.73 -0.13 -0.94 16 5 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 6 C -0.11 -1.18 5.14 -26.73 -0.14 -1.32 16 7 C -0.08 -0.89 2.36 -91.75 -0.22 -1.10 16 8 H 0.11 1.15 6.43 -51.93 -0.33 0.82 16 9 C 0.46 7.06 7.25 36.00 0.26 7.32 16 10 O -0.52 -8.74 15.73 -18.75 -0.29 -9.03 16 11 O -0.32 -5.85 9.66 -45.90 -0.44 -6.29 16 12 C 0.06 1.04 5.94 36.00 0.21 1.25 16 13 C 0.45 10.48 7.86 -10.99 -0.09 10.39 16 14 O -0.56 -15.36 16.08 -14.12 -0.23 -15.59 16 15 N -0.58 -13.89 5.09 -10.96 -0.06 -13.95 16 16 C -0.31 -8.65 10.16 -14.94 -0.15 -8.81 16 17 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 18 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 19 N -0.88 -25.25 13.96 55.50 0.77 -24.47 16 20 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 24 C -0.09 -0.91 3.30 -26.71 -0.09 -1.00 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.48 4.81 -51.93 -0.25 0.23 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.54 6.43 -51.93 -0.33 0.21 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 38 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 39 H 0.37 7.78 5.76 -40.82 -0.24 7.55 16 40 H 0.28 7.30 8.31 -40.82 -0.34 6.97 16 41 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -32.69 336.87 -6.60 -39.29 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.62 Total: 6.80 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.09 Total: 3.73 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.72 Total: -38.42 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.97 Total: -30.91 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.69 -6.60 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756267882.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.904 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds