Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47334 * 2 1 4 4 C 1.53002 * 109.47057 * 120.00549 * 2 1 3 5 5 C 1.52999 * 109.46854 * 174.99806 * 4 2 1 6 6 H 1.09007 * 109.47330 * 54.99854 * 5 4 2 7 7 C 1.50701 * 109.47144 * 174.99659 * 5 4 2 8 8 O 1.21213 * 120.00201 * 119.99586 * 7 5 4 9 9 O 1.34319 * 119.99635 * 300.00026 * 7 5 4 10 10 C 1.34925 * 116.99346 * 180.02562 * 9 7 5 11 11 H 1.07995 * 120.00684 * 359.97438 * 10 9 7 12 12 C 1.38758 * 119.99463 * 180.02562 * 10 9 7 13 13 N 1.31437 * 119.99945 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00171 * 359.97438 * 12 10 9 15 15 H 1.48510 * 109.47015 * 90.00364 * 14 12 10 16 16 H 1.48501 * 109.47432 * 210.00096 * 14 12 10 17 17 H 1.48504 * 109.47285 * 330.00560 * 14 12 10 18 18 N 1.46498 * 109.47093 * 294.99647 * 5 4 2 19 19 C 1.45753 * 117.94706 * 120.00140 * 18 5 4 20 20 C 1.52927 * 110.48908 * 160.92293 * 19 18 5 21 21 C 1.53348 * 108.67100 * 50.75080 * 20 19 18 22 22 C 1.53058 * 108.43797 * 292.48594 * 21 20 19 23 23 C 1.33353 * 117.94642 * 300.02010 * 18 5 4 24 24 O 1.21280 * 118.24584 * 2.24717 * 23 18 5 25 25 H 1.09002 * 109.46721 * 299.99694 * 1 2 3 26 26 H 1.08991 * 109.47141 * 59.99717 * 1 2 3 27 27 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46879 * 239.99819 * 2 1 3 29 29 H 1.08998 * 109.47286 * 60.00068 * 3 2 1 30 30 H 1.09002 * 109.47336 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47303 * 300.00147 * 3 2 1 32 32 H 1.08999 * 109.47345 * 54.99649 * 4 2 1 33 33 H 1.09006 * 109.46676 * 294.99249 * 4 2 1 34 34 H 0.96997 * 120.00329 * 180.02562 * 13 12 10 35 35 H 1.08998 * 109.30227 * 40.61331 * 19 18 5 36 36 H 1.08998 * 109.30323 * 281.23362 * 19 18 5 37 37 H 1.08996 * 109.60496 * 170.50895 * 20 19 18 38 38 H 1.08997 * 109.60247 * 290.99757 * 20 19 18 39 39 H 1.08997 * 109.67264 * 52.20642 * 21 20 19 40 40 H 1.09000 * 109.67050 * 172.73216 * 21 20 19 41 41 H 1.08998 * 109.39718 * 288.75313 * 22 21 20 42 42 H 1.09003 * 109.32793 * 168.97375 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8312 1.1878 6 1 3.9955 0.1610 1.0526 7 6 4.0774 -1.4304 2.4721 8 8 4.7008 -2.4697 2.4495 9 8 3.8433 -0.8129 3.6417 10 6 4.3302 -1.4022 4.7535 11 1 4.8795 -2.3288 4.6773 12 6 4.1241 -0.8180 5.9952 13 7 4.5987 -1.3916 7.0783 14 14 3.1733 0.7845 6.1272 15 1 1.7284 0.4897 6.3027 16 1 3.6661 1.5577 7.2953 17 1 3.3693 1.5799 4.8886 18 7 3.9479 -1.6873 0.0624 19 6 4.7850 -1.1094 -0.9814 20 6 5.4639 -2.2122 -1.7949 21 6 4.3972 -3.2178 -2.2448 22 6 3.8641 -3.9441 -1.0074 23 6 3.5085 -2.9463 0.0571 24 8 2.7825 -3.3047 0.9601 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1370 34 1 4.4543 -0.9835 7.9463 35 1 5.5469 -0.4782 -0.5241 36 1 4.1678 -0.5018 -1.6431 37 1 5.9477 -1.7766 -2.6691 38 1 6.2060 -2.7180 -1.1773 39 1 3.5818 -2.6908 -2.7403 40 1 4.8396 -3.9392 -2.9318 41 1 4.6289 -4.6216 -0.6278 42 1 2.9766 -4.5156 -1.2790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756580195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = -123.689579 kcal Electronic energy + Delta-G solvation = -24241.730316 eV Core-core repulsion = 20800.980862 eV Total energy + Delta-G solvation = -3440.749454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.77945 -38.71258 -36.59961 -36.21386 -35.19162 -33.46118 -32.19789 -29.94793 -29.14034 -27.13906 -25.64608 -24.52791 -23.93314 -22.40998 -20.01381 -19.84140 -18.21245 -17.85253 -16.97605 -16.58798 -15.88175 -15.50017 -14.82299 -14.72104 -14.46698 -14.17793 -13.94148 -13.78051 -13.70650 -13.39225 -13.15626 -12.66116 -12.33139 -12.22033 -12.13486 -11.84676 -11.76514 -11.50153 -11.25827 -11.14612 -11.05626 -11.02015 -10.70939 -10.55679 -10.52070 -10.31456 -10.23214 -9.61363 -9.17165 -9.06398 -8.58249 -8.35613 -6.26811 -4.01347 2.94110 3.19391 3.22150 3.29878 3.40741 3.50944 4.24966 4.32949 4.62492 4.65556 4.69943 4.80074 4.95851 5.04878 5.07389 5.21183 5.28689 5.32316 5.41520 5.44582 5.61150 5.63049 5.68534 5.73957 5.79402 5.81025 5.86071 5.88501 5.94760 6.04786 6.09962 6.10422 6.30842 6.32480 6.48714 6.65092 6.81042 7.75976 7.85553 8.14659 8.57544 8.77528 9.12373 9.80835 10.82398 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.006400 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.096065 B = 4374.193806 C = 5280.112319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.132 4.132 5 C 0.164 3.836 6 H 0.110 0.890 7 C 0.409 3.591 8 O -0.522 6.522 9 O -0.254 6.254 10 C -0.374 4.374 11 H 0.107 0.893 12 C 0.064 3.936 13 N -0.880 5.880 14 Si 0.903 3.097 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.260 1.260 18 N -0.588 5.588 19 C 0.115 3.885 20 C -0.136 4.136 21 C -0.121 4.121 22 C -0.132 4.132 23 C 0.524 3.476 24 O -0.528 6.528 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.277 0.723 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 4.368 -21.209 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.170 4.170 5 C 0.059 3.941 6 H 0.127 0.873 7 C 0.253 3.747 8 O -0.415 6.415 9 O -0.163 6.163 10 C -0.450 4.450 11 H 0.124 0.876 12 C -0.139 4.139 13 N -0.520 5.520 14 Si 0.728 3.272 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.184 1.184 18 N -0.323 5.323 19 C -0.008 4.008 20 C -0.174 4.174 21 C -0.159 4.159 22 C -0.172 4.172 23 C 0.312 3.688 24 O -0.404 6.404 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.297 3.891 -20.512 21.136 hybrid contribution -0.121 0.627 0.330 0.719 sum -3.419 4.518 -20.182 20.962 Atomic orbital electron populations 1.21798 0.95233 1.01723 1.01414 1.21065 0.95706 0.95894 0.98332 1.21931 1.00952 0.96182 1.01704 1.22108 0.92604 1.03789 0.98469 1.20431 0.96751 0.93481 0.83440 0.87275 1.23017 0.81170 0.84757 0.85795 1.90575 1.40297 1.23586 1.87044 1.83496 1.67673 1.50438 1.14676 1.20604 1.34517 1.08881 0.81040 0.87588 1.24508 0.96852 0.98911 0.93584 1.69608 1.44448 1.39745 0.98181 0.86255 0.80126 0.82613 0.78168 1.19881 1.20889 1.18423 1.47017 1.51641 1.11547 1.22100 1.21414 0.93792 0.96082 0.89464 1.21876 0.98459 0.96896 1.00127 1.21639 0.98710 0.98459 0.97048 1.21634 1.03589 0.97723 0.94226 1.19894 0.80060 0.81955 0.86860 1.90702 1.36635 1.76520 1.36512 0.92563 0.93063 0.92731 0.91450 0.92322 0.92731 0.92997 0.88424 0.89996 0.91225 0.90831 0.91696 0.89971 0.90631 0.91284 0.90835 0.88379 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 2 C -0.09 -1.14 2.86 -90.62 -0.26 -1.40 16 3 C -0.15 -1.64 8.95 37.15 0.33 -1.30 16 4 C -0.13 -2.23 3.95 -26.73 -0.11 -2.33 16 5 C 0.16 2.98 2.38 -69.08 -0.16 2.81 16 6 H 0.11 1.68 5.99 -51.92 -0.31 1.37 16 7 C 0.41 10.26 6.46 36.01 0.23 10.49 16 8 O -0.52 -14.79 13.80 -26.02 -0.36 -15.15 16 9 O -0.25 -7.04 8.39 -20.74 -0.17 -7.21 16 10 C -0.37 -11.68 10.10 30.92 0.31 -11.37 16 11 H 0.11 3.68 7.09 -52.49 -0.37 3.31 16 12 C 0.06 1.91 5.49 -17.53 -0.10 1.82 16 13 N -0.88 -27.08 13.96 55.48 0.77 -26.31 16 14 Si 0.90 22.13 28.62 -169.99 -4.86 17.26 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 18 N -0.59 -9.18 1.98 -168.69 -0.33 -9.51 16 19 C 0.12 1.24 6.25 -4.48 -0.03 1.21 16 20 C -0.14 -1.21 6.02 -26.59 -0.16 -1.37 16 21 C -0.12 -1.05 6.03 -26.52 -0.16 -1.21 16 22 C -0.13 -1.65 6.03 -28.11 -0.17 -1.82 16 23 C 0.52 9.13 6.12 -11.87 -0.07 9.06 16 24 O -0.53 -11.83 12.84 -15.19 -0.20 -12.02 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.57 6.46 -51.93 -0.34 0.23 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 1.91 5.73 -51.93 -0.30 1.61 16 33 H 0.08 1.46 8.00 -51.93 -0.42 1.05 16 34 H 0.28 7.80 8.31 -40.82 -0.34 7.46 16 35 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 36 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 39 H 0.07 0.55 8.13 -51.93 -0.42 0.12 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -37.02 335.60 -6.84 -43.86 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.75 Total: 0.75 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 0.00 Total: 3.27 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.44 Total: -35.82 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.73 Total: -34.38 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.02 -6.84 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756580195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.828 kcal (2) G-P(sol) polarization free energy of solvation -37.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds