Wall clock time and date at job start Tue Mar 31 2020 05:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47091 * 2 1 4 4 C 1.52995 * 109.47393 * 119.99871 * 2 1 3 5 5 C 1.52998 * 109.47100 * 64.31418 * 4 2 1 6 6 C 1.50701 * 112.84939 * 54.46409 * 5 4 2 7 7 O 1.20825 * 119.99857 * 357.43104 * 6 5 4 8 8 O 1.34226 * 119.99713 * 177.42587 * 6 5 4 9 9 C 1.45210 * 116.99560 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.46793 * 179.97438 * 9 8 6 11 11 O 1.21292 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99709 * 180.02562 * 10 9 8 13 13 C 1.37095 * 119.99520 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00550 * 359.97438 * 13 12 10 15 15 C 1.38956 * 119.99749 * 180.02562 * 13 12 10 16 16 N 1.31409 * 119.99633 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00119 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46918 * 90.00017 * 17 15 13 19 19 H 1.48505 * 109.47126 * 209.99910 * 17 15 13 20 20 H 1.48497 * 109.47103 * 329.99549 * 17 15 13 21 21 C 1.53779 * 113.69259 * 185.73300 * 5 4 2 22 22 C 1.53781 * 87.08285 * 89.12762 * 21 5 4 23 23 C 1.53778 * 87.07845 * 25.43245 * 22 21 5 24 24 H 1.09003 * 109.47133 * 169.94003 * 1 2 3 25 25 H 1.09006 * 109.47059 * 289.93827 * 1 2 3 26 26 H 1.09000 * 109.47477 * 49.94111 * 1 2 3 27 27 H 1.08997 * 109.47324 * 240.00277 * 2 1 3 28 28 H 1.08999 * 109.47304 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47046 * 300.00082 * 3 2 1 30 30 H 1.09006 * 109.47012 * 59.99874 * 3 2 1 31 31 H 1.09005 * 109.47190 * 304.31048 * 4 2 1 32 32 H 1.09000 * 109.47473 * 184.31779 * 4 2 1 33 33 H 1.08996 * 109.47044 * 60.00430 * 9 8 6 34 34 H 1.08993 * 109.46797 * 300.00029 * 9 8 6 35 35 H 0.97001 * 119.99932 * 359.97438 * 12 10 9 36 36 H 0.97006 * 120.00201 * 179.97438 * 16 15 13 37 37 H 1.08998 * 113.61842 * 203.67620 * 21 5 4 38 38 H 1.09006 * 113.61515 * 334.57918 * 21 5 4 39 39 H 1.09003 * 113.61155 * 270.88503 * 22 21 5 40 40 H 1.08993 * 113.61564 * 139.98240 * 22 21 5 41 41 H 1.09006 * 113.61257 * 220.02268 * 23 22 21 42 42 H 1.09004 * 113.61562 * 89.11976 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6206 -2.1916 1.1962 6 6 2.0567 -2.8792 -0.0720 7 8 2.6296 -2.2533 -0.9322 8 8 1.8087 -4.1868 -0.2457 9 6 2.2577 -4.7830 -1.4913 10 6 1.8952 -6.2457 -1.5074 11 8 1.3150 -6.7372 -0.5624 12 7 2.2157 -7.0077 -2.5719 13 6 1.8854 -8.3382 -2.5868 14 1 1.3688 -8.7758 -1.7454 15 6 2.2162 -9.1239 -3.6840 16 7 2.8453 -8.5915 -4.7076 17 14 1.7669 -10.9370 -3.7041 18 1 0.4185 -11.1061 -4.3029 19 1 2.7642 -11.6853 -4.5107 20 1 1.7608 -11.4608 -2.3145 21 6 1.9629 -2.9782 2.4724 22 6 0.5874 -2.5503 3.0108 23 6 0.1408 -2.4231 1.5448 24 1 -0.3633 -1.0119 -0.1795 25 1 -0.3633 0.3505 0.9661 26 1 -0.3634 0.6614 -0.7865 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6150 -0.2539 2.1376 32 1 3.1272 -0.6547 1.2887 33 1 3.3391 -4.6762 -1.5761 34 1 1.7760 -4.2796 -2.3294 35 1 2.6793 -6.6145 -3.3278 36 1 3.0766 -9.1401 -5.4735 37 1 2.0540 -4.0525 2.3120 38 1 2.8000 -2.5603 3.0317 39 1 0.6042 -1.6009 3.5461 40 1 0.0689 -3.3371 3.5585 41 1 -0.4931 -1.5568 1.3551 42 1 -0.2663 -3.3455 1.1307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757144523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:20 Heat of formation + Delta-G solvation = -112.132625 kcal Electronic energy + Delta-G solvation = -22896.900016 eV Core-core repulsion = 19456.651709 eV Total energy + Delta-G solvation = -3440.248307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11808 -38.93713 -37.91382 -36.29416 -35.15968 -33.98843 -31.37584 -29.04096 -28.29372 -27.70007 -25.42817 -25.30512 -24.24549 -21.38291 -20.37035 -19.54309 -19.06615 -18.05610 -17.17796 -16.48036 -16.21934 -15.74369 -15.38894 -14.96659 -14.58460 -14.23594 -13.99614 -13.83611 -13.65803 -13.13862 -12.59966 -12.53311 -12.37765 -12.28106 -12.15839 -11.96427 -11.84310 -11.61973 -11.58746 -11.30637 -11.13439 -10.76303 -10.73386 -10.44219 -10.40273 -10.30440 -10.25885 -9.99240 -9.60411 -9.59131 -8.50884 -8.07890 -6.49713 -3.91708 2.32904 2.76697 3.13341 3.23418 3.29686 3.74601 4.11496 4.34888 4.40849 4.44881 4.67010 4.75995 4.91958 4.98139 5.07231 5.15536 5.19400 5.37886 5.47134 5.55047 5.55826 5.65710 5.69516 5.71364 5.72807 5.76751 5.78123 5.84109 5.87053 5.93629 6.03079 6.07222 6.12960 6.24862 6.34186 6.40551 6.82354 7.47920 7.90405 8.02071 8.49196 9.07436 9.39951 9.89969 10.67560 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029939 B = 0.003454 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.005878 B = 8105.463746 C = 8646.828371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.142 4.142 4 C -0.075 4.075 5 C -0.079 4.079 6 C 0.470 3.530 7 O -0.510 6.510 8 O -0.323 6.323 9 C 0.060 3.940 10 C 0.439 3.561 11 O -0.576 6.576 12 N -0.553 5.553 13 C -0.302 4.302 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.897 5.897 17 Si 0.934 3.066 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.268 1.268 21 C -0.124 4.124 22 C -0.137 4.137 23 C -0.137 4.137 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.105 0.895 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 16.733 10.373 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.137 4.137 3 C -0.199 4.199 4 C -0.113 4.113 5 C -0.080 4.080 6 C 0.314 3.686 7 O -0.399 6.399 8 O -0.237 6.237 9 C -0.018 4.018 10 C 0.224 3.776 11 O -0.460 6.460 12 N -0.191 5.191 13 C -0.432 4.432 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.538 5.538 17 Si 0.760 3.240 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.161 4.161 22 C -0.174 4.174 23 C -0.174 4.174 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.228 0.772 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.289 16.456 10.553 19.683 hybrid contribution 0.300 -0.618 -0.863 1.103 sum -1.989 15.838 9.690 18.674 Atomic orbital electron populations 1.22148 0.95878 1.01903 1.01163 1.21516 0.95557 0.96292 1.00338 1.21789 1.00885 0.96049 1.01202 1.21294 1.01260 0.90076 0.98641 1.21909 0.99725 0.95960 0.90437 1.23547 0.75779 0.80756 0.88526 1.90521 1.39312 1.65453 1.44645 1.86524 1.73095 1.23918 1.40168 1.22730 1.00540 0.94162 0.84341 1.19332 0.86439 0.86398 0.85459 1.90556 1.45653 1.73771 1.36004 1.41708 1.51412 1.09479 1.16455 1.19725 1.35632 0.83588 1.04211 0.87630 1.25311 0.96619 1.00825 0.95005 1.69615 1.39693 1.37431 1.07054 0.85802 0.78177 0.81407 0.78592 1.20259 1.20813 1.19273 1.23009 0.98058 1.01313 0.93713 1.22814 0.96615 1.01714 0.96287 1.23400 0.93346 1.04084 0.96561 0.91965 0.92825 0.93026 0.87720 0.92840 0.92888 0.93245 0.90633 0.91174 0.89697 0.89700 0.77183 0.91637 0.88167 0.90770 0.90040 0.90668 0.89047 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.55 37.15 0.28 -1.23 16 2 C -0.12 -1.30 2.67 -90.62 -0.24 -1.54 16 3 C -0.14 -1.31 9.18 37.16 0.34 -0.97 16 4 C -0.08 -0.78 3.98 -26.73 -0.11 -0.89 16 5 C -0.08 -0.96 0.82 -154.85 -0.13 -1.09 16 6 C 0.47 7.55 6.91 36.01 0.25 7.80 16 7 O -0.51 -8.85 13.38 -18.75 -0.25 -9.10 16 8 O -0.32 -6.05 9.00 -45.89 -0.41 -6.47 16 9 C 0.06 1.16 5.94 36.01 0.21 1.37 16 10 C 0.44 10.64 7.86 -10.98 -0.09 10.56 16 11 O -0.58 -15.99 16.08 -14.11 -0.23 -16.21 16 12 N -0.55 -14.07 5.29 -10.96 -0.06 -14.13 16 13 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 14 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 15 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 16 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 17 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 C -0.12 -1.37 7.18 -25.92 -0.19 -1.56 16 22 C -0.14 -1.28 7.73 -25.92 -0.20 -1.48 16 23 C -0.14 -1.50 6.06 -25.92 -0.16 -1.66 16 24 H 0.06 0.67 5.77 -51.93 -0.30 0.37 16 25 H 0.05 0.45 7.62 -51.93 -0.40 0.05 16 26 H 0.05 0.48 8.11 -51.93 -0.42 0.06 16 27 H 0.10 1.45 5.16 -51.93 -0.27 1.19 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.64 7.30 -51.93 -0.38 0.26 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.52 8.13 -51.93 -0.42 1.09 16 34 H 0.08 1.51 8.13 -51.93 -0.42 1.09 16 35 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.10 1.32 7.74 -51.93 -0.40 0.92 16 38 H 0.07 0.71 8.10 -51.93 -0.42 0.28 16 39 H 0.08 0.61 7.61 -51.93 -0.40 0.22 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.86 4.59 -51.93 -0.24 0.63 16 42 H 0.10 1.25 7.88 -51.93 -0.41 0.84 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -31.10 338.96 -6.82 -37.92 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -6.42 Total: 9.23 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -0.26 Total: 1.37 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.67 Total: -37.57 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.89 Total: -31.78 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.10 -6.82 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757144523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.210 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds