Wall clock time and date at job start Tue Mar 31 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46913 * 2 1 4 4 C 1.50698 * 109.46999 * 119.99727 * 2 1 3 5 5 O 1.20827 * 120.00241 * 113.78605 * 4 2 1 6 6 O 1.34230 * 120.00185 * 293.78375 * 4 2 1 7 7 C 1.45202 * 117.00118 * 179.97438 * 6 4 2 8 8 C 1.50701 * 109.47052 * 180.02562 * 7 6 4 9 9 O 1.21293 * 119.99958 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99941 * 180.02562 * 8 7 6 11 11 C 1.37093 * 120.00181 * 180.02562 * 10 8 7 12 12 H 1.08003 * 119.99638 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00328 * 179.97438 * 11 10 8 14 14 N 1.31413 * 119.99818 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00203 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47433 * 60.00011 * 15 13 11 17 17 H 1.48503 * 109.47223 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46748 * 299.99793 * 15 13 11 19 19 C 1.52999 * 109.47119 * 239.99765 * 2 1 3 20 20 C 1.54880 * 110.75556 * 177.40850 * 19 2 1 21 21 C 1.54264 * 104.19857 * 203.74263 * 20 19 2 22 22 C 1.53876 * 106.59801 * 23.61294 * 21 20 19 23 23 C 1.54272 * 106.59755 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47347 * 299.99954 * 1 2 3 25 25 H 1.09001 * 109.47361 * 59.99826 * 1 2 3 26 26 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46664 * 184.84216 * 3 2 1 28 28 H 1.08997 * 109.46787 * 304.84069 * 3 2 1 29 29 H 1.08998 * 109.47057 * 64.84183 * 3 2 1 30 30 H 1.09005 * 109.47092 * 300.00159 * 7 6 4 31 31 H 1.09003 * 109.47014 * 60.00213 * 7 6 4 32 32 H 0.96999 * 119.99881 * 359.97438 * 10 8 7 33 33 H 0.97008 * 119.99916 * 179.97438 * 14 13 11 34 34 H 1.09000 * 110.66947 * 300.85126 * 19 2 1 35 35 H 1.09004 * 110.49172 * 322.42424 * 20 19 2 36 36 H 1.09007 * 110.48524 * 85.06531 * 20 19 2 37 37 H 1.08995 * 110.03340 * 264.33174 * 21 20 19 38 38 H 1.09000 * 110.03329 * 142.89187 * 21 20 19 39 39 H 1.09005 * 110.03133 * 240.72006 * 22 21 20 40 40 H 1.08996 * 110.07443 * 119.30260 * 22 21 20 41 41 H 1.08996 * 110.48787 * 217.71472 * 23 22 21 42 42 H 1.09002 * 110.59770 * 95.12235 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.6316 -1.7540 1.1233 6 8 1.8141 -0.1836 2.4457 7 6 2.3258 -0.9225 3.5861 8 6 1.9878 -0.1843 4.8557 9 8 1.3755 0.8615 4.8044 10 7 2.3660 -0.6861 6.0480 11 6 2.0581 -0.0148 7.2030 12 1 1.5121 0.9160 7.1574 13 6 2.4474 -0.5323 8.4323 14 7 3.1104 -1.6656 8.4878 15 14 2.0273 0.3820 10.0061 16 1 0.5529 0.5141 10.1234 17 1 2.5514 -0.3733 11.1724 18 1 2.6443 1.7324 9.9737 19 6 2.0400 -0.7213 -1.2492 20 6 3.5870 -0.6822 -1.3124 21 6 3.9091 -0.8595 -2.8106 22 6 2.6623 -0.3987 -3.5858 23 6 1.6258 0.0420 -2.5315 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1265 1.4437 -0.0867 28 1 1.6075 1.9807 -0.8434 29 1 1.7492 1.9307 0.9302 30 1 1.8718 -1.9133 3.6104 31 1 3.4079 -1.0207 3.4995 32 1 2.8553 -1.5226 6.0890 33 1 3.3826 -2.0268 9.3460 34 1 1.6752 -1.7481 -1.2765 35 1 3.9595 0.2771 -0.9531 36 1 4.0134 -1.4999 -0.7312 37 1 4.1166 -1.9075 -3.0264 38 1 4.7667 -0.2446 -3.0835 39 1 2.2648 -1.2232 -4.1777 40 1 2.9142 0.4396 -4.2353 41 1 0.6212 -0.2468 -2.8402 42 1 1.6791 1.1184 -2.3679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757836093.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:47 Heat of formation + Delta-G solvation = -145.890048 kcal Electronic energy + Delta-G solvation = -22754.144629 eV Core-core repulsion = 19312.432490 eV Total energy + Delta-G solvation = -3441.712139 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83344 -38.83196 -37.92265 -35.95909 -34.62578 -33.97898 -31.36502 -29.00249 -28.55025 -27.74607 -27.39076 -24.84118 -23.73961 -21.18107 -20.36968 -19.55084 -18.79128 -18.05486 -17.04091 -16.72047 -16.21880 -15.81989 -15.33115 -15.21184 -14.54040 -14.29080 -14.02318 -13.88724 -13.68672 -13.16701 -13.08675 -12.46024 -12.34525 -12.11430 -11.94223 -11.80632 -11.61240 -11.55679 -11.27246 -11.15741 -11.13172 -11.09048 -10.62731 -10.54993 -10.48516 -10.40109 -10.30904 -10.29190 -9.98903 -9.58503 -8.49937 -8.07158 -6.48932 -3.91004 2.40389 2.76890 3.16027 3.23110 3.27956 3.75599 4.11179 4.29084 4.40821 4.51772 4.70509 4.84635 4.86899 5.00607 5.16208 5.18653 5.28655 5.36771 5.41553 5.47887 5.54506 5.55223 5.60305 5.67436 5.72333 5.75033 5.78347 5.80405 5.87841 5.91243 6.04702 6.07683 6.14362 6.19623 6.28146 6.38106 6.73374 7.48382 7.90348 8.01645 8.50075 9.08067 9.40723 9.90890 10.68304 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042290 B = 0.003103 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.941949 B = 9020.876957 C = 9331.926515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.150 4.150 4 C 0.465 3.535 5 O -0.511 6.511 6 O -0.323 6.323 7 C 0.059 3.941 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.303 4.303 12 H 0.105 0.895 13 C 0.025 3.975 14 N -0.898 5.898 15 Si 0.934 3.066 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.071 4.071 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.122 4.122 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.395 0.605 33 H 0.274 0.726 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 1.039 -20.789 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 C -0.207 4.207 4 C 0.308 3.692 5 O -0.400 6.400 6 O -0.237 6.237 7 C -0.018 4.018 8 C 0.224 3.776 9 O -0.460 6.460 10 N -0.191 5.191 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.539 5.539 15 Si 0.761 3.239 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.090 4.090 20 C -0.165 4.165 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.159 4.159 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.228 0.772 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.939 1.321 -20.641 20.705 hybrid contribution 0.296 -0.446 0.954 1.094 sum -0.643 0.876 -19.688 19.718 Atomic orbital electron populations 1.21886 0.91577 1.02859 1.03700 1.20450 0.97744 0.96701 0.89506 1.22065 1.01747 0.93120 1.03785 1.23714 0.76513 0.83776 0.85208 1.90614 1.38711 1.23354 1.87319 1.86550 1.71809 1.51110 1.14224 1.22727 0.99817 0.95259 0.84027 1.19335 0.86410 0.87946 0.83917 1.90555 1.44557 1.24376 1.86492 1.41703 1.49880 1.23328 1.04162 1.19673 1.34357 1.06679 0.82472 0.87685 1.25307 0.96528 0.96296 0.99618 1.69611 1.38020 1.18973 1.27248 0.85861 0.79007 0.79129 0.79909 1.19754 1.20871 1.19757 1.22014 0.96032 0.99276 0.91654 1.22602 0.95088 1.02713 0.96123 1.22113 0.97647 1.01082 0.95288 1.22115 0.95626 1.00618 0.97746 1.22532 0.98678 1.00592 0.94114 0.90710 0.90944 0.92158 0.91655 0.90948 0.90482 0.89730 0.89718 0.77183 0.91588 0.89795 0.91284 0.90466 0.92010 0.92068 0.92048 0.91978 0.91557 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.28 37.16 0.31 -1.22 16 2 C -0.04 -0.52 0.55 -155.66 -0.08 -0.60 16 3 C -0.15 -1.65 7.74 37.16 0.29 -1.36 16 4 C 0.47 7.49 6.27 36.00 0.23 7.71 16 5 O -0.51 -8.96 14.28 -18.75 -0.27 -9.23 16 6 O -0.32 -6.10 9.37 -45.90 -0.43 -6.53 16 7 C 0.06 1.16 5.94 36.01 0.21 1.37 16 8 C 0.44 10.70 7.86 -10.98 -0.09 10.62 16 9 O -0.58 -16.06 16.08 -14.11 -0.23 -16.29 16 10 N -0.55 -14.13 5.29 -10.96 -0.06 -14.19 16 11 C -0.30 -8.40 9.68 -14.94 -0.14 -8.55 16 12 H 0.11 3.03 7.16 -52.48 -0.38 2.66 16 13 C 0.02 0.66 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 15 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 C -0.07 -0.76 1.80 -88.64 -0.16 -0.91 16 20 C -0.13 -1.40 5.40 -25.08 -0.14 -1.53 16 21 C -0.12 -1.09 6.80 -25.61 -0.17 -1.27 16 22 C -0.12 -0.96 6.80 -25.61 -0.17 -1.13 16 23 C -0.12 -0.99 5.25 -25.08 -0.13 -1.12 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.07 0.60 7.32 -51.93 -0.38 0.22 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.70 5.87 -51.93 -0.30 0.40 16 28 H 0.07 0.62 6.30 -51.93 -0.33 0.29 16 29 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 30 H 0.08 1.52 8.13 -51.93 -0.42 1.10 16 31 H 0.08 1.52 8.13 -51.93 -0.42 1.10 16 32 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.07 0.75 5.68 -51.93 -0.29 0.45 16 36 H 0.08 1.00 7.01 -51.93 -0.36 0.63 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.48 8.01 -51.93 -0.42 0.07 16 42 H 0.07 0.57 5.78 -51.93 -0.30 0.27 16 LS Contribution 337.21 15.07 5.08 5.08 Total: -1.00 -31.41 337.21 -6.78 -38.19 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.43 Total: 8.14 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.15 Total: 2.57 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.67 Total: -37.71 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.92 Total: -32.05 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.41 -6.78 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757836093.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.696 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds