Wall clock time and date at job start Tue Mar 31 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47237 * 2 1 4 4 C 1.52995 * 109.47538 * 177.94226 * 3 2 1 5 5 C 1.50707 * 112.90880 * 293.25491 * 4 3 2 6 6 O 1.20822 * 120.00219 * 125.37987 * 5 4 3 7 7 O 1.34224 * 119.99692 * 305.38324 * 5 4 3 8 8 C 1.45198 * 117.00026 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47425 * 180.02562 * 8 7 5 10 10 O 1.21281 * 120.00196 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00222 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00129 * 179.97438 * 11 9 8 13 13 C 1.50709 * 109.47295 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99439 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00139 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00120 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99940 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47020 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46900 * 120.00162 * 17 15 13 20 20 H 1.48499 * 109.46899 * 239.99950 * 17 15 13 21 21 C 1.53780 * 113.61520 * 64.50338 * 4 3 2 22 22 C 1.53778 * 87.07958 * 89.11728 * 21 4 3 23 23 C 1.53780 * 113.61699 * 162.00311 * 4 3 2 24 24 H 1.08997 * 109.47350 * 60.00315 * 1 2 3 25 25 H 1.09007 * 109.47012 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47329 * 299.99640 * 1 2 3 27 27 H 1.09006 * 109.47247 * 240.00301 * 2 1 3 28 28 H 1.09003 * 109.47344 * 120.00412 * 2 1 3 29 29 H 1.09006 * 109.46959 * 57.94362 * 3 2 1 30 30 H 1.08994 * 109.47236 * 297.94727 * 3 2 1 31 31 H 1.09007 * 109.47255 * 300.00218 * 8 7 5 32 32 H 1.09003 * 109.47324 * 59.99555 * 8 7 5 33 33 H 0.97004 * 120.00082 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47142 * 299.99550 * 12 11 9 35 35 H 1.08994 * 109.47395 * 60.00125 * 12 11 9 36 36 H 0.96997 * 119.99928 * 179.97438 * 16 15 13 37 37 H 1.09003 * 113.61272 * 334.56892 * 21 4 3 38 38 H 1.08993 * 113.61835 * 203.66543 * 21 4 3 39 39 H 1.09004 * 113.61556 * 139.98494 * 22 21 4 40 40 H 1.09005 * 113.61556 * 270.88589 * 22 21 4 41 41 H 1.09003 * 113.61460 * 156.33857 * 23 4 3 42 42 H 1.09002 * 113.68825 * 25.44426 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5690 1.4429 0.0518 5 6 4.1121 0.9102 1.3528 6 8 4.9061 -0.0004 1.3484 7 8 3.7135 1.4475 2.5165 8 6 4.2774 0.8841 3.7301 9 6 3.7174 1.6079 4.9273 10 8 2.9218 2.5102 4.7731 11 7 4.1015 1.2533 6.1696 12 6 3.5576 1.9573 7.3335 13 6 4.1437 1.3733 8.5931 14 1 4.8504 0.5588 8.5326 15 6 3.7770 1.8780 9.8226 16 7 2.9161 2.8694 9.8962 17 14 4.5030 1.1535 11.3839 18 1 5.4390 0.0559 11.0315 19 1 5.2358 2.2107 12.1259 20 1 3.4107 0.6178 12.2354 21 6 4.2277 0.8213 -1.1911 22 6 4.1953 2.2269 -1.8142 23 6 4.1997 2.7778 -0.3784 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6468 1.9669 0.8710 30 1 1.7070 1.9456 -0.9078 31 1 4.0212 -0.1736 3.7928 32 1 5.3616 0.9948 3.7125 33 1 4.7382 0.5319 6.2931 34 1 3.8135 3.0150 7.2706 35 1 2.4734 1.8462 7.3514 36 1 2.6578 3.2242 10.7612 37 1 3.5934 0.1003 -1.7068 38 1 5.2352 0.4470 -1.0102 39 1 5.0937 2.4746 -2.3797 40 1 3.2771 2.4410 -2.3612 41 1 5.1997 2.9383 0.0246 42 1 3.5439 3.6372 -0.2385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759450813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:40 Heat of formation + Delta-G solvation = -124.804224 kcal Electronic energy + Delta-G solvation = -22289.123734 eV Core-core repulsion = 18848.325945 eV Total energy + Delta-G solvation = -3440.797789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.19365 -39.25860 -38.33517 -36.23421 -34.35421 -34.24432 -32.41524 -29.65581 -28.49442 -26.72684 -26.04959 -25.10475 -22.70448 -21.81486 -21.52323 -19.93632 -18.93411 -17.56754 -17.44256 -16.63260 -16.60565 -15.69358 -15.42036 -15.22724 -14.97162 -14.52422 -14.37771 -13.85546 -13.70558 -13.17563 -12.90187 -12.76312 -12.62058 -12.39142 -12.08946 -11.99333 -11.80330 -11.75305 -11.49051 -11.32350 -10.99788 -10.96521 -10.94480 -10.67405 -10.64099 -10.42889 -10.35415 -10.20221 -9.42989 -9.16781 -8.79398 -7.99175 -6.20511 -4.27829 2.13505 2.47078 3.18148 3.21804 3.29025 3.32117 3.95026 4.05043 4.18574 4.32429 4.39673 4.46370 4.74586 4.87510 4.94451 5.01897 5.15755 5.17824 5.24361 5.32812 5.34774 5.37465 5.44574 5.50653 5.55358 5.61256 5.68637 5.72913 5.80562 5.91906 6.03489 6.09759 6.15163 6.39290 7.22105 7.30794 7.45110 7.59281 7.73002 7.91170 8.49784 8.70805 8.96290 9.38697 10.89700 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.002976 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.773840 B = 9406.870344 C = 9710.231863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.096 4.096 4 C -0.077 4.077 5 C 0.475 3.525 6 O -0.512 6.512 7 O -0.324 6.324 8 C 0.046 3.954 9 C 0.500 3.500 10 O -0.534 6.534 11 N -0.707 5.707 12 C 0.251 3.749 13 C -0.544 4.544 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.117 4.117 22 C -0.139 4.139 23 C -0.121 4.121 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.393 0.607 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 -4.297 -22.909 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.134 4.134 4 C -0.078 4.078 5 C 0.318 3.682 6 O -0.400 6.400 7 O -0.239 6.239 8 C -0.031 4.031 9 C 0.283 3.717 10 O -0.411 6.411 11 N -0.357 5.357 12 C 0.131 3.869 13 C -0.583 4.583 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.154 4.154 22 C -0.177 4.177 23 C -0.159 4.159 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.225 0.775 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.398 -3.777 -22.814 23.128 hybrid contribution 0.825 -0.865 1.223 1.710 sum 1.223 -4.641 -21.591 22.118 Atomic orbital electron populations 1.21750 0.95271 1.01777 1.02094 1.21549 0.96376 0.96314 1.02149 1.21469 0.89882 0.98013 1.04005 1.21990 0.97763 0.99416 0.88607 1.23621 0.78742 0.80081 0.85763 1.90637 1.33014 1.28409 1.87919 1.86586 1.64522 1.58843 1.13912 1.22863 0.99340 0.98600 0.82329 1.19888 0.83067 0.84615 0.84155 1.90705 1.34195 1.30345 1.85845 1.46368 1.45792 1.37746 1.05819 1.19177 0.94868 0.92652 0.80228 1.21247 1.27280 1.19238 0.90510 0.91726 1.24954 0.94873 0.94817 0.99363 1.69982 1.31881 1.24846 1.25485 0.86338 0.78936 0.78997 0.82515 1.19596 1.20755 1.20761 1.23001 1.01885 0.97120 0.93387 1.22836 1.02741 0.96018 0.96064 1.22959 1.01549 0.95313 0.96057 0.92695 0.92695 0.92258 0.91688 0.92264 0.89700 0.90251 0.88687 0.88679 0.77454 0.95266 0.95264 0.92423 0.90302 0.88752 0.90698 0.89557 0.89507 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.15 0.37 -0.92 16 2 C -0.13 -1.19 5.64 -26.74 -0.15 -1.34 16 3 C -0.10 -0.92 4.54 -26.73 -0.12 -1.04 16 4 C -0.08 -0.81 0.90 -154.85 -0.14 -0.94 16 5 C 0.48 6.70 6.22 36.01 0.22 6.93 16 6 O -0.51 -8.00 15.70 -18.75 -0.29 -8.30 16 7 O -0.32 -5.27 9.63 -45.89 -0.44 -5.71 16 8 C 0.05 0.73 5.94 36.00 0.21 0.94 16 9 C 0.50 10.15 7.91 -10.99 -0.09 10.06 16 10 O -0.53 -13.11 16.50 -14.10 -0.23 -13.34 16 11 N -0.71 -14.76 5.55 -61.47 -0.34 -15.10 16 12 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 13 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16 14 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -25.86 13.29 55.43 0.74 -25.12 16 17 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 C -0.12 -1.01 6.78 -25.92 -0.18 -1.19 16 22 C -0.14 -0.97 7.73 -25.92 -0.20 -1.17 16 23 C -0.12 -1.09 7.21 -25.92 -0.19 -1.28 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.54 6.76 -51.93 -0.35 0.19 16 28 H 0.06 0.67 7.56 -51.93 -0.39 0.28 16 29 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.08 0.59 7.31 -51.93 -0.38 0.21 16 31 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 32 H 0.10 1.32 8.13 -51.93 -0.42 0.89 16 33 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 34 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.08 0.60 6.70 -51.93 -0.35 0.25 16 38 H 0.09 0.92 7.52 -51.93 -0.39 0.53 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.50 7.62 -51.93 -0.40 0.10 16 41 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.08 0.72 8.10 -51.93 -0.42 0.29 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -32.83 351.56 -7.77 -40.60 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.77 Total: 2.69 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.70 Total: 3.31 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.40 Total: -40.22 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.97 Total: -27.35 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.83 -7.77 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759450813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.204 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds