Wall clock time and date at job start Tue Mar 31 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47237 * 2 1 4 4 C 1.52995 * 109.47538 * 177.94226 * 3 2 1 5 5 C 1.50707 * 112.90880 * 293.25491 * 4 3 2 6 6 O 1.20822 * 120.00219 * 125.37987 * 5 4 3 7 7 O 1.34224 * 119.99692 * 305.38324 * 5 4 3 8 8 C 1.45198 * 117.00026 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47425 * 180.02562 * 8 7 5 10 10 O 1.21281 * 120.00196 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00222 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00129 * 179.97438 * 11 9 8 13 13 C 1.50709 * 109.47295 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99439 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00139 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00120 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99940 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47020 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46900 * 120.00162 * 17 15 13 20 20 H 1.48499 * 109.46899 * 239.99950 * 17 15 13 21 21 C 1.53780 * 113.61520 * 64.50338 * 4 3 2 22 22 C 1.53778 * 87.07958 * 89.11728 * 21 4 3 23 23 C 1.53780 * 113.61699 * 162.00311 * 4 3 2 24 24 H 1.08997 * 109.47350 * 60.00315 * 1 2 3 25 25 H 1.09007 * 109.47012 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47329 * 299.99640 * 1 2 3 27 27 H 1.09006 * 109.47247 * 240.00301 * 2 1 3 28 28 H 1.09003 * 109.47344 * 120.00412 * 2 1 3 29 29 H 1.09006 * 109.46959 * 57.94362 * 3 2 1 30 30 H 1.08994 * 109.47236 * 297.94727 * 3 2 1 31 31 H 1.09007 * 109.47255 * 300.00218 * 8 7 5 32 32 H 1.09003 * 109.47324 * 59.99555 * 8 7 5 33 33 H 0.97004 * 120.00082 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47142 * 299.99550 * 12 11 9 35 35 H 1.08994 * 109.47395 * 60.00125 * 12 11 9 36 36 H 0.96997 * 119.99928 * 179.97438 * 16 15 13 37 37 H 1.09003 * 113.61272 * 334.56892 * 21 4 3 38 38 H 1.08993 * 113.61835 * 203.66543 * 21 4 3 39 39 H 1.09004 * 113.61556 * 139.98494 * 22 21 4 40 40 H 1.09005 * 113.61556 * 270.88589 * 22 21 4 41 41 H 1.09003 * 113.61460 * 156.33857 * 23 4 3 42 42 H 1.09002 * 113.68825 * 25.44426 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5690 1.4429 0.0518 5 6 4.1121 0.9102 1.3528 6 8 4.9061 -0.0004 1.3484 7 8 3.7135 1.4475 2.5165 8 6 4.2774 0.8841 3.7301 9 6 3.7174 1.6079 4.9273 10 8 2.9218 2.5102 4.7731 11 7 4.1015 1.2533 6.1696 12 6 3.5576 1.9573 7.3335 13 6 4.1437 1.3733 8.5931 14 1 4.8504 0.5588 8.5326 15 6 3.7770 1.8780 9.8226 16 7 2.9161 2.8694 9.8962 17 14 4.5030 1.1535 11.3839 18 1 5.4390 0.0559 11.0315 19 1 5.2358 2.2107 12.1259 20 1 3.4107 0.6178 12.2354 21 6 4.2277 0.8213 -1.1911 22 6 4.1953 2.2269 -1.8142 23 6 4.1997 2.7778 -0.3784 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6468 1.9669 0.8710 30 1 1.7070 1.9456 -0.9078 31 1 4.0212 -0.1736 3.7928 32 1 5.3616 0.9948 3.7125 33 1 4.7382 0.5319 6.2931 34 1 3.8135 3.0150 7.2706 35 1 2.4734 1.8462 7.3514 36 1 2.6578 3.2242 10.7612 37 1 3.5934 0.1003 -1.7068 38 1 5.2352 0.4470 -1.0102 39 1 5.0937 2.4746 -2.3797 40 1 3.2771 2.4410 -2.3612 41 1 5.1997 2.9383 0.0246 42 1 3.5439 3.6372 -0.2385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759450813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:39 Heat of formation + Delta-G solvation = -144.914285 kcal Electronic energy + Delta-G solvation = -22289.995771 eV Core-core repulsion = 18848.325945 eV Total energy + Delta-G solvation = -3441.669827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.21848 -40.68084 -39.57218 -37.47074 -36.20905 -35.06428 -34.43963 -31.06712 -29.57822 -28.40600 -26.76581 -26.00537 -24.61830 -22.76453 -22.34046 -21.68081 -19.92002 -19.13426 -18.54052 -18.01027 -17.82873 -17.29264 -16.98581 -16.40461 -16.24782 -15.95909 -15.63085 -14.93341 -14.66868 -14.53549 -14.28686 -14.09788 -13.89562 -13.63873 -13.36259 -13.23287 -12.93498 -12.83971 -12.76888 -12.54594 -12.24141 -12.22057 -12.00622 -11.94093 -11.74247 -11.48942 -11.34028 -11.20003 -11.11567 -10.90176 -10.84813 -9.96206 -8.31335 -6.48040 1.03697 1.26439 1.43765 1.43924 1.51283 1.57838 2.32539 2.54737 3.03982 3.29122 3.40747 3.60900 3.67192 3.80157 3.84825 3.99195 4.00140 4.13554 4.23774 4.36455 4.67962 4.68643 4.74503 4.80935 4.86029 4.96532 5.02802 5.05104 5.09577 5.13286 5.19391 5.19596 5.27320 5.32906 5.39429 5.43019 5.46916 5.60627 5.80068 6.55715 6.61139 6.75505 7.17957 7.32532 8.81081 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.002976 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.773840 B = 9406.870344 C = 9710.231863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.092 4.092 4 C -0.085 4.085 5 C 0.473 3.527 6 O -0.529 6.529 7 O -0.345 6.345 8 C 0.057 3.943 9 C 0.500 3.500 10 O -0.581 6.581 11 N -0.699 5.699 12 C 0.266 3.734 13 C -0.557 4.557 14 H 0.085 0.915 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.985 3.015 18 H -0.253 1.253 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.127 4.127 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.412 0.588 34 H -0.007 1.007 35 H -0.008 1.008 36 H 0.269 0.731 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.932 -5.660 -24.363 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.129 4.129 4 C -0.086 4.086 5 C 0.317 3.683 6 O -0.418 6.418 7 O -0.260 6.260 8 C -0.020 4.020 9 C 0.286 3.714 10 O -0.462 6.462 11 N -0.350 5.350 12 C 0.144 3.856 13 C -0.594 4.594 14 H 0.103 0.897 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.809 3.191 18 H -0.177 1.177 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.151 4.151 22 C -0.159 4.159 23 C -0.165 4.165 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.248 0.752 34 H 0.011 0.989 35 H 0.010 0.990 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.515 -5.179 -24.300 24.892 hybrid contribution 0.465 -0.419 1.619 1.735 sum 1.979 -5.598 -22.681 23.446 Atomic orbital electron populations 1.21745 0.94644 1.02157 1.02231 1.21554 0.96937 0.96151 1.01661 1.21466 0.89093 0.98071 1.04318 1.22328 0.98466 1.00773 0.87064 1.24445 0.78284 0.79633 0.85897 1.90616 1.33950 1.29233 1.88033 1.86600 1.65161 1.59623 1.14620 1.22724 1.00175 0.98639 0.80479 1.20643 0.81888 0.83835 0.85026 1.90680 1.36316 1.32583 1.86598 1.46053 1.46057 1.37919 1.04991 1.18640 0.92957 0.91376 0.82606 1.21632 1.27506 1.19676 0.90625 0.89653 1.26054 0.95048 0.95004 1.03417 1.70136 1.33500 1.26529 1.26660 0.85099 0.78228 0.78466 0.77351 1.17667 1.20432 1.20453 1.23017 1.01178 0.98524 0.92396 1.22823 1.04408 0.93856 0.94775 1.23041 1.01008 0.94714 0.97696 0.90851 0.92234 0.93812 0.89994 0.94862 0.92054 0.87372 0.86318 0.86155 0.75185 0.98933 0.98955 0.92164 0.88903 0.90011 0.89416 0.87517 0.90369 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.91 71.98 0.71 -1.69 16 2 C -0.13 -2.23 5.64 30.59 0.17 -2.06 16 3 C -0.09 -1.64 4.54 30.59 0.14 -1.50 16 4 C -0.09 -1.69 0.90 -52.40 -0.05 -1.74 16 5 C 0.47 13.15 6.22 71.24 0.44 13.59 16 6 O -0.53 -16.15 15.70 21.97 0.35 -15.80 16 7 O -0.34 -11.28 9.63 -45.00 -0.43 -11.71 16 8 C 0.06 1.75 5.94 71.23 0.42 2.18 16 9 C 0.50 20.72 7.91 87.66 0.69 21.42 16 10 O -0.58 -29.85 16.50 15.76 0.26 -29.59 16 11 N -0.70 -29.54 5.55 -466.79 -2.59 -32.13 16 12 C 0.27 14.55 5.43 85.64 0.46 15.02 16 13 C -0.56 -30.02 9.28 25.60 0.24 -29.78 16 14 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 15 C 0.00 0.25 5.46 84.65 0.46 0.71 16 16 N -0.93 -55.72 13.29 21.44 0.28 -55.44 16 17 Si 0.99 42.07 29.54 68.60 2.03 44.09 16 18 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 19 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 21 C -0.11 -1.72 6.78 31.12 0.21 -1.51 16 22 C -0.12 -1.32 7.73 31.12 0.24 -1.08 16 23 C -0.13 -2.10 7.21 31.12 0.22 -1.88 16 24 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.17 6.76 -2.38 -0.02 1.15 16 28 H 0.03 0.75 7.56 -2.39 -0.02 0.73 16 29 H 0.06 1.39 8.08 -2.38 -0.02 1.37 16 30 H 0.11 1.30 7.31 -2.39 -0.02 1.28 16 31 H 0.12 3.13 8.13 -2.38 -0.02 3.11 16 32 H 0.12 3.14 8.13 -2.39 -0.02 3.12 16 33 H 0.41 14.12 8.32 -92.71 -0.77 13.35 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.09 1.14 6.70 -2.39 -0.02 1.12 16 38 H 0.08 1.47 7.52 -2.39 -0.02 1.45 16 39 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.11 0.77 7.62 -2.38 -0.02 0.75 16 41 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 42 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 Total: -1.00 -73.76 351.56 4.51 -69.25 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.24 Total: 19.66 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 4.38 Total: 11.67 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -2.30 Total: -87.57 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: 0.17 Total: -57.10 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -73.76 4.51 -69.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759450813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.668 kcal (2) G-P(sol) polarization free energy of solvation -73.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds