Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00356 * 2 1 4 4 O 1.21283 * 119.99289 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00366 * 179.97438 * 3 2 1 6 6 C 1.50699 * 112.84944 * 309.67034 * 5 3 2 7 7 O 1.20829 * 119.99768 * 230.32981 * 6 5 3 8 8 O 1.34223 * 119.99905 * 50.60540 * 6 5 3 9 9 C 1.45208 * 116.99611 * 179.72137 * 8 6 5 10 10 C 1.53002 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.47106 * 300.00147 * 10 9 8 12 12 C 1.52999 * 109.47159 * 59.99928 * 10 9 8 13 13 C 1.50689 * 109.47199 * 180.02562 * 10 9 8 14 14 H 1.08001 * 120.00371 * 356.88624 * 13 10 9 15 15 C 1.37877 * 120.00184 * 176.88857 * 13 10 9 16 16 N 1.31515 * 119.99973 * 5.76689 * 15 13 10 17 17 Si 1.86800 * 120.00353 * 185.76356 * 15 13 10 18 18 H 1.48505 * 109.46855 * 85.02099 * 17 15 13 19 19 H 1.48498 * 109.47512 * 205.02364 * 17 15 13 20 20 H 1.48507 * 109.46874 * 325.02425 * 17 15 13 21 21 C 1.53777 * 113.61038 * 80.86694 * 5 3 2 22 22 C 1.53949 * 87.02014 * 89.22952 * 21 5 3 23 23 C 1.53775 * 87.11395 * 25.36078 * 22 21 5 24 24 H 1.08993 * 109.46988 * 299.99455 * 1 2 3 25 25 H 1.09000 * 109.47119 * 59.99793 * 1 2 3 26 26 H 1.09001 * 109.46595 * 180.02562 * 1 2 3 27 27 H 0.97002 * 120.00309 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47218 * 300.00263 * 9 8 6 29 29 H 1.08999 * 109.46727 * 60.00377 * 9 8 6 30 30 H 1.09005 * 109.46912 * 53.84422 * 11 10 9 31 31 H 1.08999 * 109.47381 * 173.83812 * 11 10 9 32 32 H 1.08992 * 109.47281 * 293.84829 * 11 10 9 33 33 H 1.09000 * 109.46996 * 60.00062 * 12 10 9 34 34 H 1.09000 * 109.46953 * 179.97438 * 12 10 9 35 35 H 1.09002 * 109.47233 * 300.00512 * 12 10 9 36 36 H 0.96998 * 120.00388 * 180.02562 * 16 15 13 37 37 H 1.09003 * 113.61171 * 203.74504 * 21 5 3 38 38 H 1.09000 * 113.61695 * 334.64855 * 21 5 3 39 39 H 1.09008 * 113.53881 * 270.80474 * 22 21 5 40 40 H 1.09003 * 113.74205 * 139.94446 * 22 21 5 41 41 H 1.09001 * 113.61689 * 220.09139 * 23 22 21 42 42 H 1.08997 * 113.69032 * 89.19713 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.2307 0.2809 1.0700 7 8 5.0806 0.7113 1.8132 8 8 3.8114 -0.9882 1.1932 9 6 4.4231 -1.7857 2.2412 10 6 3.8231 -3.1930 2.2271 11 6 2.3143 -3.1067 2.4666 12 6 4.0872 -3.8465 0.8691 13 6 4.4573 -4.0205 3.3151 14 1 5.2481 -3.6022 3.9202 15 6 4.0281 -5.3116 3.5383 16 7 3.1466 -5.8603 2.7311 17 14 4.6987 -6.2816 4.9870 18 1 3.9109 -5.9613 6.2044 19 1 4.5967 -7.7349 4.6995 20 1 6.1218 -5.9196 5.2089 21 6 4.2624 0.9432 -1.3903 22 6 4.2115 2.4713 -1.5705 23 6 4.2619 2.5757 -0.0371 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.9500 -0.8400 0.0004 28 1 5.4978 -1.8475 2.0704 29 1 4.2351 -1.3199 3.2086 30 1 1.8706 -2.4205 1.7452 31 1 1.8705 -4.0951 2.3482 32 1 2.1270 -2.7428 3.4768 33 1 5.1620 -3.9080 0.6985 34 1 3.6602 -4.8493 0.8593 35 1 3.6282 -3.2478 0.0824 36 1 2.8444 -6.7685 2.8883 37 1 5.2749 0.5408 -1.3594 38 1 3.6106 0.4000 -2.0745 39 1 3.2761 2.8278 -2.0019 40 1 5.0904 2.8844 -2.0654 41 1 3.6097 3.3486 0.3697 42 1 5.2737 2.6207 0.3657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764844983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = -112.469830 kcal Electronic energy + Delta-G solvation = -23822.768263 eV Core-core repulsion = 20382.505333 eV Total energy + Delta-G solvation = -3440.262930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26578 -39.37087 -37.62307 -36.39074 -34.98713 -34.52044 -31.36836 -28.82184 -26.36203 -25.90913 -25.73575 -25.50768 -24.95326 -21.73271 -21.41308 -19.37142 -18.96116 -18.07644 -16.50315 -16.48052 -15.88214 -15.76335 -15.63942 -15.04292 -14.86418 -14.72355 -13.86917 -13.26429 -13.16938 -12.88047 -12.87346 -12.55316 -12.30272 -12.10031 -11.99160 -11.61804 -11.48634 -11.25309 -11.11656 -11.01315 -10.77200 -10.62781 -10.52549 -10.30982 -10.17188 -10.01913 -9.81527 -9.51580 -9.39917 -9.09927 -8.85856 -8.43915 -6.10051 -4.20167 2.17178 2.55559 3.07427 3.24072 3.24710 3.30923 3.35023 4.10475 4.30501 4.33117 4.56537 4.69230 4.93881 5.17378 5.31009 5.36258 5.49536 5.51486 5.57578 5.70442 5.78907 5.80023 5.93538 5.97643 6.00416 6.19780 6.35140 6.40138 6.63215 6.87170 6.90766 6.98062 7.01774 7.29487 7.49790 7.52084 7.63373 7.93826 7.99081 8.08830 8.18391 8.30070 8.79098 9.45475 10.91821 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025582 B = 0.004692 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.251618 B = 5965.966530 C = 6506.410859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.719 5.719 3 C 0.544 3.456 4 O -0.534 6.534 5 C -0.113 4.113 6 C 0.472 3.528 7 O -0.503 6.503 8 O -0.351 6.351 9 C 0.085 3.915 10 C 0.071 3.929 11 C -0.126 4.126 12 C -0.129 4.129 13 C -0.515 4.515 14 H 0.057 0.943 15 C 0.071 3.929 16 N -0.881 5.881 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.108 4.108 22 C -0.138 4.138 23 C -0.100 4.100 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.416 0.584 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.014 0.986 31 H 0.081 0.919 32 H 0.026 0.974 33 H 0.023 0.977 34 H 0.085 0.915 35 H 0.014 0.986 36 H 0.261 0.739 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.851 10.213 -9.112 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.372 5.372 3 C 0.329 3.671 4 O -0.411 6.411 5 C -0.118 4.118 6 C 0.313 3.687 7 O -0.391 6.391 8 O -0.267 6.267 9 C 0.012 3.988 10 C 0.070 3.930 11 C -0.184 4.184 12 C -0.187 4.187 13 C -0.553 4.553 14 H 0.075 0.925 15 C -0.131 4.131 16 N -0.519 5.519 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.146 4.146 22 C -0.175 4.175 23 C -0.137 4.137 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.254 0.746 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.104 0.896 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.158 10.834 -8.882 14.174 hybrid contribution 0.665 -1.122 1.119 1.718 sum -1.493 9.712 -7.762 12.522 Atomic orbital electron populations 1.21577 0.79229 1.02781 1.02027 1.45885 1.08036 1.09262 1.74029 1.19357 0.87498 0.84119 0.76170 1.90680 1.69278 1.31335 1.49826 1.22168 0.94135 0.98807 0.96660 1.22820 0.80412 0.82212 0.83249 1.90633 1.30789 1.75042 1.42629 1.86385 1.62801 1.22402 1.55159 1.23738 0.96798 0.91922 0.86322 1.18254 0.93309 0.86213 0.95180 1.21749 0.97587 1.01639 0.97418 1.21797 0.98595 1.02867 0.95398 1.20896 1.20099 0.97821 1.16468 0.92505 1.24834 0.94951 0.97172 0.96188 1.69832 1.31406 1.14510 1.36132 0.86569 0.79446 0.78955 0.82800 1.20539 1.21190 1.19950 1.22915 1.01873 0.98300 0.91472 1.22896 1.03171 0.95028 0.96437 1.22820 1.02049 0.92219 0.96644 0.92184 0.92251 0.90109 0.74628 0.92311 0.92399 0.96729 0.90043 0.95513 0.95735 0.89647 0.96664 0.92857 0.88255 0.89776 0.89301 0.90222 0.89200 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 10.70 59.85 0.64 1.64 16 2 N -0.72 -9.79 5.50 -67.08 -0.37 -10.16 16 3 C 0.54 8.17 6.62 -10.98 -0.07 8.10 16 4 O -0.53 -9.11 15.83 5.56 0.09 -9.02 16 5 C -0.11 -1.60 1.20 -156.00 -0.19 -1.78 16 6 C 0.47 8.14 7.00 36.00 0.25 8.40 16 7 O -0.50 -9.87 15.66 -18.75 -0.29 -10.16 16 8 O -0.35 -6.38 6.71 -39.24 -0.26 -6.64 16 9 C 0.08 1.77 4.26 37.16 0.16 1.92 16 10 C 0.07 1.62 0.58 -155.66 -0.09 1.53 16 11 C -0.13 -2.81 8.06 37.16 0.30 -2.51 16 12 C -0.13 -2.86 8.14 37.16 0.30 -2.56 16 13 C -0.51 -13.21 8.01 -34.45 -0.28 -13.49 16 14 H 0.06 1.47 7.75 -52.49 -0.41 1.06 16 15 C 0.07 1.82 5.13 -17.82 -0.09 1.73 16 16 N -0.88 -22.95 9.46 55.43 0.52 -22.43 16 17 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.11 -1.18 7.22 -25.83 -0.19 -1.37 16 22 C -0.14 -1.39 7.76 -25.83 -0.20 -1.59 16 23 C -0.10 -1.26 6.78 -25.92 -0.18 -1.43 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.42 5.75 6.77 -40.82 -0.28 5.47 16 28 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 29 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.01 0.27 7.33 -51.93 -0.38 -0.11 16 31 H 0.08 1.97 6.25 -51.93 -0.32 1.65 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 2.09 6.11 -51.93 -0.32 1.77 16 35 H 0.01 0.29 7.68 -51.93 -0.40 -0.11 16 36 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 37 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 39 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.19 7.41 -51.93 -0.38 0.81 16 42 H 0.10 1.29 7.45 -51.93 -0.39 0.90 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -28.61 339.99 -6.49 -35.10 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.66 Total: 4.33 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 0.37 Total: -1.42 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.16 Total: -32.59 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.47 Total: -25.82 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.61 -6.49 -35.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764844983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.367 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds