Wall clock time and date at job start Tue Mar 31 2020 06:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47255 * 2 1 4 4 C 1.53004 * 109.47274 * 239.99682 * 2 1 3 5 5 O 1.45200 * 109.47245 * 119.99905 * 2 1 3 6 6 C 1.34538 * 117.00330 * 59.99812 * 5 2 1 7 7 O 1.21256 * 119.99736 * 0.02562 * 6 5 2 8 8 C 1.49433 * 120.00406 * 179.97438 * 6 5 2 9 9 O 1.21339 * 119.99976 * 355.54424 * 8 6 5 10 10 N 1.34778 * 119.99742 * 175.53965 * 8 6 5 11 11 C 1.46502 * 120.00290 * 5.68282 * 10 8 6 12 12 C 1.50702 * 109.46777 * 276.44044 * 11 10 8 13 13 H 1.07998 * 120.00131 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99618 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00087 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00316 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47166 * 89.99397 * 16 14 12 18 18 H 1.48499 * 109.47168 * 210.00259 * 16 14 12 19 19 H 1.48501 * 109.46851 * 329.99809 * 16 14 12 20 20 C 1.46502 * 119.99561 * 185.67797 * 10 8 6 21 21 C 1.53004 * 109.46919 * 84.98428 * 20 10 8 22 22 C 1.53003 * 117.49574 * 243.62101 * 21 20 10 23 23 C 1.52997 * 117.49748 * 175.00016 * 21 20 10 24 24 H 1.08998 * 109.47268 * 299.99866 * 1 2 3 25 25 H 1.08996 * 109.46942 * 60.00496 * 1 2 3 26 26 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47324 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46506 * 300.00014 * 3 2 1 29 29 H 1.08990 * 109.47126 * 59.99724 * 3 2 1 30 30 H 1.09000 * 109.47010 * 300.00264 * 4 2 1 31 31 H 1.09005 * 109.46716 * 59.99972 * 4 2 1 32 32 H 1.09000 * 109.47371 * 179.97438 * 4 2 1 33 33 H 1.08992 * 109.46920 * 36.44618 * 11 10 8 34 34 H 1.09007 * 109.46695 * 156.44317 * 11 10 8 35 35 H 0.97004 * 120.00409 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.47042 * 204.97754 * 20 10 8 37 37 H 1.09002 * 109.47602 * 324.98185 * 20 10 8 38 38 H 1.08995 * 115.55067 * 29.32611 * 21 20 10 39 39 H 1.09004 * 117.49747 * 359.97438 * 22 21 20 40 40 H 1.08998 * 117.50227 * 145.02210 * 22 21 20 41 41 H 1.09001 * 117.49810 * 214.97546 * 23 21 20 42 42 H 1.08999 * 117.50220 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6526 -1.9713 1.3383 7 8 0.9534 -2.5076 0.5054 8 6 2.1136 -2.7401 2.5339 9 8 2.8791 -2.2299 3.3251 10 7 1.6790 -4.0002 2.7334 11 6 0.8555 -4.6606 1.7175 12 6 -0.5850 -4.2563 1.8981 13 1 -0.8595 -3.5752 2.6900 14 6 -1.5522 -4.7550 1.0515 15 7 -2.8093 -4.4026 1.2093 16 14 -1.0772 -5.9326 -0.3187 17 1 -1.1480 -7.3288 0.1819 18 1 -2.0132 -5.7676 -1.4597 19 1 0.3072 -5.6372 -0.7675 20 6 2.0303 -4.7096 3.9662 21 6 1.0305 -4.3465 5.0660 22 6 1.5679 -3.6078 6.2934 23 6 1.1563 -5.0772 6.4043 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 1.1949 -4.3634 0.7253 34 1 0.9455 -5.7418 1.8235 35 1 -3.4898 -4.7532 0.6135 36 1 2.0000 -5.7845 3.7881 37 1 3.0342 -4.4211 4.2780 38 1 0.0275 -4.0917 4.7241 39 1 2.6338 -3.3808 6.3175 40 1 0.9184 -2.8666 6.7591 41 1 0.2360 -5.3027 6.9431 42 1 1.9511 -5.8168 6.5012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764874027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:18 Heat of formation + Delta-G solvation = -78.290034 kcal Electronic energy + Delta-G solvation = -23971.958660 eV Core-core repulsion = 20533.177877 eV Total energy + Delta-G solvation = -3438.780782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62498 -39.00757 -36.90772 -36.61101 -34.78524 -33.59150 -32.38949 -28.50668 -27.30671 -27.18430 -27.10565 -24.40804 -22.51132 -21.99144 -20.83328 -19.88548 -18.87431 -16.99704 -16.84422 -16.63136 -15.93525 -15.70820 -15.10469 -14.71811 -14.33638 -14.05520 -13.91181 -13.52320 -13.35876 -13.17777 -12.62211 -12.41128 -12.16457 -12.05219 -11.93964 -11.69042 -11.55712 -11.42788 -11.23602 -11.20864 -11.12145 -10.94117 -10.61578 -10.27381 -10.16746 -10.05845 -10.00727 -9.57004 -9.50965 -8.84154 -8.54365 -7.96884 -6.09874 -4.07503 1.89716 2.50988 3.25721 3.34268 3.37233 3.71390 3.98707 4.24821 4.39037 4.89774 4.93887 4.95086 5.10588 5.11132 5.22956 5.27597 5.37531 5.60131 5.71833 5.76162 5.82334 5.88919 5.89751 5.91202 5.98132 6.03402 6.09201 6.14127 6.20098 6.36285 6.42122 6.44383 6.62857 6.70466 6.77721 6.98507 7.14701 7.52521 7.79661 8.08529 8.43071 8.60433 8.90490 9.50434 11.03071 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.008381 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.205648 B = 3339.944392 C = 5069.876892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.115 3.885 3 C -0.137 4.137 4 C -0.183 4.183 5 O -0.335 6.335 6 C 0.444 3.556 7 O -0.427 6.427 8 C 0.534 3.466 9 O -0.526 6.526 10 N -0.556 5.556 11 C 0.194 3.806 12 C -0.515 4.515 13 H 0.073 0.927 14 C 0.080 3.920 15 N -0.896 5.896 16 Si 0.872 3.128 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.263 1.263 20 C 0.153 3.847 21 C -0.162 4.162 22 C -0.176 4.176 23 C -0.179 4.179 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.028 0.972 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.220 4.338 0.120 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.079 3.921 3 C -0.194 4.194 4 C -0.240 4.240 5 O -0.252 6.252 6 C 0.280 3.720 7 O -0.309 6.309 8 C 0.317 3.683 9 O -0.404 6.404 10 N -0.288 5.288 11 C 0.074 3.926 12 C -0.553 4.553 13 H 0.091 0.909 14 C -0.122 4.122 15 N -0.535 5.535 16 Si 0.699 3.301 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.187 1.187 20 C 0.030 3.970 21 C -0.181 4.181 22 C -0.213 4.213 23 C -0.216 4.216 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.113 0.887 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.201 4.425 0.132 10.211 hybrid contribution -0.314 -0.600 -0.901 1.127 sum 8.887 3.825 -0.769 9.706 Atomic orbital electron populations 1.22504 0.93530 1.05908 1.02257 1.22201 0.94832 0.92022 0.83077 1.21814 1.01935 0.92868 1.02804 1.22491 1.01326 1.03505 0.96656 1.86635 1.69392 1.24441 1.44741 1.23295 0.79450 0.81605 0.87614 1.90831 1.30073 1.68407 1.41631 1.18797 0.82141 0.82539 0.84820 1.90689 1.34966 1.68669 1.46091 1.47811 1.49286 1.11979 1.19772 1.20427 0.91779 0.92596 0.87793 1.21098 0.88897 1.29114 1.16238 0.90872 1.24727 0.94662 0.96068 0.96750 1.69886 1.00472 1.44554 1.38567 0.86914 0.79226 0.81350 0.82608 1.20395 1.21173 1.18738 1.21049 0.97041 0.96233 0.82643 1.22838 1.01985 1.04267 0.88970 1.22968 1.01430 0.94408 1.02489 1.22888 1.02921 0.95150 1.00692 0.92061 0.91478 0.88662 0.91688 0.90590 0.91510 0.89598 0.91226 0.92231 0.91945 0.95424 0.92664 0.89643 0.90437 0.86199 0.88866 0.89358 0.89009 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 8.37 37.16 0.31 -2.70 16 2 C 0.11 1.78 1.13 -90.62 -0.10 1.68 16 3 C -0.14 -1.62 8.85 37.16 0.33 -1.30 16 4 C -0.18 -2.62 8.37 37.16 0.31 -2.31 16 5 O -0.34 -6.35 9.75 -45.07 -0.44 -6.79 16 6 C 0.44 9.28 7.17 35.40 0.25 9.54 16 7 O -0.43 -9.48 7.73 -19.08 -0.15 -9.63 16 8 C 0.53 11.38 7.64 -11.59 -0.09 11.30 16 9 O -0.53 -11.59 16.60 -7.63 -0.13 -11.71 16 10 N -0.56 -11.43 2.48 -175.57 -0.44 -11.86 16 11 C 0.19 4.40 3.88 -5.19 -0.02 4.38 16 12 C -0.52 -13.68 8.44 -34.44 -0.29 -13.97 16 13 H 0.07 2.16 7.60 -52.49 -0.40 1.76 16 14 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 15 N -0.90 -26.47 13.96 55.43 0.77 -25.70 16 16 Si 0.87 20.74 27.47 -169.99 -4.67 16.07 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 20 C 0.15 2.64 5.73 -4.04 -0.02 2.61 16 21 C -0.16 -2.79 5.98 -90.62 -0.54 -3.33 16 22 C -0.18 -2.66 10.18 -26.73 -0.27 -2.93 16 23 C -0.18 -2.48 10.25 -26.73 -0.27 -2.75 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.09 1.91 5.88 -51.93 -0.31 1.61 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.47 4.81 -51.93 -0.25 1.22 16 34 H 0.03 0.60 7.21 -51.92 -0.37 0.22 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.09 1.32 7.78 -51.93 -0.40 0.91 16 37 H 0.08 1.26 7.24 -51.93 -0.38 0.89 16 38 H 0.12 2.46 7.67 -51.93 -0.40 2.06 16 39 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -30.37 342.03 -7.02 -37.39 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.62 Total: 4.73 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.51 Total: 2.34 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.34 Total: -37.56 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.71 Total: -28.13 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.37 -7.02 -37.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764874027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.900 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds