Wall clock time and date at job start Tue Mar 31 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 C 1.53007 * 109.46918 * 120.00062 * 2 1 3 5 5 N 1.46500 * 109.47287 * 65.34963 * 4 2 1 6 6 C 1.46497 * 119.99670 * 84.16827 * 5 4 2 7 7 C 1.50701 * 109.47255 * 94.75040 * 6 5 4 8 8 H 1.08000 * 119.99687 * 4.84072 * 7 6 5 9 9 C 1.37878 * 120.00227 * 184.84293 * 7 6 5 10 10 N 1.31517 * 119.99682 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47219 * 90.00174 * 11 9 7 13 13 H 1.48505 * 109.46949 * 210.00139 * 11 9 7 14 14 H 1.48495 * 109.47416 * 330.00145 * 11 9 7 15 15 C 1.34772 * 119.99909 * 264.17213 * 5 4 2 16 16 O 1.21284 * 119.99830 * 175.94365 * 15 5 4 17 17 C 1.50703 * 119.99978 * 355.93475 * 15 5 4 18 18 C 1.53005 * 109.46752 * 181.08946 * 17 15 5 19 19 H 1.08998 * 110.76906 * 308.52488 * 18 17 15 20 20 C 1.54569 * 110.86823 * 72.27877 * 18 17 15 21 21 O 1.45829 * 104.44517 * 145.00885 * 20 18 17 22 22 C 1.34074 * 109.90628 * 329.39951 * 21 20 18 23 23 O 1.20829 * 125.08971 * 200.83159 * 22 21 20 24 24 C 1.51324 * 109.81017 * 20.82693 * 22 21 20 25 25 H 1.09002 * 109.46698 * 60.84400 * 1 2 3 26 26 H 1.09000 * 109.46787 * 180.84264 * 1 2 3 27 27 H 1.08997 * 109.46882 * 300.83660 * 1 2 3 28 28 H 1.09005 * 109.47302 * 239.99419 * 2 1 3 29 29 H 1.08997 * 109.46883 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47223 * 299.99739 * 3 2 1 31 31 H 1.09003 * 109.46951 * 60.00311 * 3 2 1 32 32 H 1.09001 * 109.46865 * 185.34686 * 4 2 1 33 33 H 1.09004 * 109.47084 * 305.34809 * 4 2 1 34 34 H 1.09004 * 109.47069 * 214.74424 * 6 5 4 35 35 H 1.08996 * 109.47948 * 334.74497 * 6 5 4 36 36 H 0.97003 * 119.99190 * 179.97438 * 10 9 7 37 37 H 1.08989 * 109.47029 * 301.08960 * 17 15 5 38 38 H 1.08995 * 109.46863 * 61.09474 * 17 15 5 39 39 H 1.08997 * 110.44094 * 263.75371 * 20 18 17 40 40 H 1.09007 * 110.43964 * 26.27158 * 20 18 17 41 41 H 1.09001 * 110.37032 * 238.85194 * 24 22 21 42 42 H 1.09005 * 110.36761 * 116.52408 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6596 -2.1347 1.1867 6 6 2.4936 -3.0855 0.4474 7 6 3.4562 -3.7526 1.3958 8 1 3.3960 -3.5528 2.4555 9 6 4.4139 -4.6178 0.9108 10 7 4.4876 -4.8606 -0.3797 11 14 5.6075 -5.4441 2.0864 12 1 5.0338 -6.7331 2.5495 13 1 6.8940 -5.6969 1.3889 14 1 5.8437 -4.5591 3.2552 15 6 0.5425 -2.5601 1.8090 16 8 0.1877 -3.7144 1.6964 17 6 -0.2658 -1.6015 2.6451 18 6 -1.4584 -2.3392 3.2572 19 1 -2.0148 -2.8778 2.4901 20 6 -0.9969 -3.2940 4.3817 21 8 -2.0749 -3.2483 5.3628 22 6 -2.6629 -2.0437 5.3392 23 8 -3.3210 -1.5742 6.2373 24 6 -2.3788 -1.3601 4.0194 25 1 -0.3633 0.5007 -0.8975 26 1 -0.3633 -1.0276 0.0151 27 1 -0.3633 0.5268 0.8824 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1258 -0.6391 1.2985 33 1 1.6005 -0.2657 2.1367 34 1 1.8593 -3.8406 -0.0170 35 1 3.0522 -2.5557 -0.3242 36 1 5.1616 -5.4691 -0.7209 37 1 0.3593 -1.1977 3.4414 38 1 -0.6261 -0.7866 2.0172 39 1 -0.8760 -4.3062 3.9959 40 1 -0.0652 -2.9401 4.8231 41 1 -1.8686 -0.4113 4.1855 42 1 -3.3050 -1.2021 3.4668 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765308267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:58 Heat of formation + Delta-G solvation = -134.438935 kcal Electronic energy + Delta-G solvation = -23277.814397 eV Core-core repulsion = 19836.598815 eV Total energy + Delta-G solvation = -3441.215581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06250 -39.41415 -37.51413 -36.43753 -34.40464 -33.60054 -32.34976 -29.37899 -27.86601 -27.26793 -26.66989 -25.44707 -23.08793 -21.32826 -21.16343 -20.31576 -18.43154 -17.39986 -16.73686 -16.52786 -16.41008 -16.19664 -15.52361 -15.10493 -14.59449 -14.29655 -14.06982 -13.85670 -13.61034 -13.40247 -13.01364 -12.70300 -12.48980 -12.18551 -12.07764 -12.01393 -11.78617 -11.46632 -11.31143 -11.18170 -11.00566 -10.89036 -10.82380 -10.60931 -10.55592 -10.45299 -10.24239 -10.19520 -9.68807 -9.01753 -8.49658 -7.74144 -6.10895 -4.15637 1.98063 3.25141 3.26816 3.27029 3.33484 3.35966 3.69598 3.89547 4.21227 4.39380 4.52671 4.66914 4.94662 5.00417 5.03430 5.17890 5.20328 5.23761 5.30843 5.40689 5.43655 5.53877 5.59602 5.62236 5.76434 5.77932 5.88058 5.97415 6.00114 6.08284 6.18393 6.34940 6.45768 6.71937 6.97952 7.36141 7.37061 7.44963 7.85467 8.15921 8.32408 8.81167 8.97793 9.49784 10.97095 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.005445 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.226093 B = 5141.192131 C = 6735.943308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.114 3.886 5 N -0.593 5.593 6 C 0.247 3.753 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.506 3.494 16 O -0.542 6.542 17 C -0.148 4.148 18 C -0.104 4.104 19 H 0.109 0.891 20 C 0.061 3.939 21 O -0.349 6.349 22 C 0.484 3.516 23 O -0.468 6.468 24 C -0.185 4.185 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.263 0.737 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.113 0.887 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.403 12.218 2.687 15.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.201 4.201 4 C -0.011 4.011 5 N -0.324 5.324 6 C 0.128 3.872 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.292 3.708 16 O -0.420 6.420 17 C -0.188 4.188 18 C -0.123 4.123 19 H 0.127 0.873 20 C -0.013 4.013 21 O -0.265 6.265 22 C 0.324 3.676 23 O -0.352 6.352 24 C -0.223 4.223 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.803 11.521 3.031 14.812 hybrid contribution 0.951 -0.352 0.358 1.076 sum -7.851 11.169 3.389 14.067 Atomic orbital electron populations 1.21999 0.95762 1.01811 1.01111 1.21569 0.95819 0.96131 1.00164 1.21761 1.01281 0.95599 1.01420 1.21571 1.01208 0.81700 0.96596 1.48214 1.23940 1.08583 1.51645 1.19257 0.89026 0.87455 0.91438 1.21403 1.14842 1.26311 0.93876 0.92552 1.24921 0.97507 0.96412 0.95182 1.69929 1.35112 1.36229 1.12078 0.86521 0.80240 0.79990 0.80806 1.20518 1.21148 1.19959 1.20154 0.81459 0.88463 0.80715 1.90673 1.69552 1.19047 1.62733 1.22080 0.96284 0.99609 1.00788 1.22265 0.96319 0.95626 0.98091 0.87306 1.24384 0.87212 1.04012 0.85646 1.87036 1.46636 1.33787 1.59038 1.23151 0.76492 0.79903 0.88008 1.90695 1.37552 1.64841 1.42160 1.23001 1.03162 1.01106 0.95068 0.92855 0.92331 0.92762 0.90368 0.92412 0.92791 0.92864 0.90140 0.91464 0.94359 0.94641 0.92692 0.88999 0.87622 0.85776 0.89615 0.86920 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.58 37.16 0.28 -1.32 16 2 C -0.12 -1.42 3.12 -90.62 -0.28 -1.70 16 3 C -0.14 -1.37 9.19 37.16 0.34 -1.03 16 4 C 0.11 1.60 4.87 -4.04 -0.02 1.58 16 5 N -0.59 -11.03 2.26 -175.05 -0.40 -11.42 16 6 C 0.25 6.00 5.17 -5.19 -0.03 5.97 16 7 C -0.53 -14.11 9.35 -34.44 -0.32 -14.43 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 11 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 C 0.51 8.87 6.15 -10.99 -0.07 8.80 16 16 O -0.54 -11.72 14.80 5.55 0.08 -11.64 16 17 C -0.15 -1.71 3.28 -27.88 -0.09 -1.80 16 18 C -0.10 -1.15 2.74 -89.01 -0.24 -1.40 16 19 H 0.11 1.28 7.86 -51.93 -0.41 0.87 16 20 C 0.06 0.77 6.79 37.98 0.26 1.03 16 21 O -0.35 -4.90 11.05 -38.50 -0.43 -5.32 16 22 C 0.48 6.38 8.58 36.31 0.31 6.69 16 23 O -0.47 -7.58 18.00 -18.41 -0.33 -7.91 16 24 C -0.19 -1.70 6.52 -26.79 -0.17 -1.88 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.74 6.27 -51.93 -0.33 0.42 16 27 H 0.05 0.46 6.73 -51.93 -0.35 0.12 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 33 H 0.07 0.75 6.22 -51.93 -0.32 0.43 16 34 H 0.04 1.06 7.51 -51.93 -0.39 0.67 16 35 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.09 0.93 7.31 -51.93 -0.38 0.55 16 38 H 0.11 1.00 4.47 -51.93 -0.23 0.76 16 39 H 0.12 1.71 7.85 -51.93 -0.41 1.31 16 40 H 0.09 1.02 7.77 -51.93 -0.40 0.62 16 41 H 0.11 0.82 7.80 -51.93 -0.40 0.42 16 42 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -32.51 339.96 -6.91 -39.42 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.54 Total: -1.62 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.13 Total: 2.12 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.34 Total: -36.33 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.67 Total: -24.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.51 -6.91 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765308267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.018 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds