Wall clock time and date at job start Tue Mar 31 2020 05:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48505 * 109.47233 * 239.99577 * 3 2 1 5 5 H 1.48494 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47121 * 120.00179 * 3 2 1 7 7 C 1.37878 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99787 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99879 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47076 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.47372 * 180.02562 * 10 9 7 12 12 C 1.34230 * 117.00173 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99597 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99758 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.46919 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.47300 * 179.97438 * 15 14 12 17 17 O 1.21284 * 120.00109 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00137 * 179.97438 * 16 15 14 19 19 C 1.46506 * 119.99873 * 179.97438 * 18 16 15 20 20 C 1.54268 * 110.03351 * 272.90833 * 19 18 16 21 21 C 1.54960 * 104.16081 * 217.13577 * 20 19 18 22 22 C 1.54894 * 102.77798 * 37.89146 * 21 20 19 23 23 C 1.53876 * 110.02735 * 155.69309 * 19 18 16 24 24 H 0.97005 * 120.00415 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46637 * 60.00879 * 9 7 2 26 26 H 1.08998 * 109.47553 * 300.00447 * 9 7 2 27 27 H 1.09003 * 109.47242 * 59.99818 * 10 9 7 28 28 H 1.09003 * 109.47442 * 300.00631 * 10 9 7 29 29 H 1.09000 * 109.47319 * 60.00517 * 14 12 11 30 30 H 1.08987 * 109.47394 * 299.99672 * 14 12 11 31 31 H 1.09004 * 109.46930 * 60.00101 * 15 14 12 32 32 H 1.09000 * 109.47312 * 300.00045 * 15 14 12 33 33 H 0.96995 * 120.00018 * 0.27749 * 18 16 15 34 34 H 1.08996 * 110.01518 * 34.30257 * 19 18 16 35 35 H 1.09004 * 110.48628 * 335.78894 * 20 19 18 36 36 H 1.09007 * 110.48293 * 98.42755 * 20 19 18 37 37 H 1.08999 * 110.72063 * 279.58023 * 21 20 19 38 38 H 1.09000 * 110.91947 * 156.29644 * 21 20 19 39 39 H 1.09000 * 110.48739 * 203.40857 * 22 21 20 40 40 H 1.09000 * 110.59948 * 80.80998 * 22 21 20 41 41 H 1.08997 * 110.03107 * 238.56635 * 23 19 18 42 42 H 1.08992 * 110.03504 * 0.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5193 -4.9196 -0.0011 12 6 2.2504 -6.0453 -0.0007 13 8 3.4570 -5.9819 -0.0003 14 6 1.5662 -7.3880 -0.0007 15 6 2.6200 -8.4973 -0.0008 16 6 1.9359 -9.8400 -0.0001 17 8 0.7247 -9.9036 -0.0001 18 7 2.6700 -10.9703 -0.0006 19 6 2.0049 -12.2757 0.0006 20 6 1.7011 -12.7127 1.4485 21 6 1.9408 -14.2436 1.4407 22 6 3.1711 -14.3930 0.5115 23 6 2.9389 -13.3436 -0.5953 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.9438 -7.4787 -0.8909 30 1 0.9432 -7.4783 0.8890 31 1 3.2428 -8.4068 0.8892 32 1 3.2428 -8.4068 -0.8908 33 1 3.6386 -10.9196 0.0027 34 1 1.0810 -12.2242 -0.5756 35 1 2.3818 -12.2236 2.1454 36 1 0.6655 -12.4893 1.7051 37 1 1.0787 -14.7669 1.0271 38 1 2.1673 -14.6073 2.4429 39 1 3.2077 -15.3954 0.0851 40 1 4.0908 -14.1767 1.0552 41 1 2.4679 -13.8110 -1.4600 42 1 3.8871 -12.8908 -0.8848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767767006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:46 Heat of formation + Delta-G solvation = -158.844875 kcal Electronic energy + Delta-G solvation = -21233.056441 eV Core-core repulsion = 17790.782539 eV Total energy + Delta-G solvation = -3442.273902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42622 -39.80309 -38.08402 -36.19784 -33.97266 -33.35667 -32.97245 -30.28096 -29.18124 -28.35259 -26.01619 -24.54506 -21.46243 -21.12391 -20.75785 -20.66026 -20.02206 -17.93855 -16.95455 -16.61927 -16.47598 -16.04695 -15.81334 -15.48920 -15.29341 -14.73668 -14.47379 -13.94338 -13.80936 -13.60670 -12.88563 -12.75013 -12.37055 -12.35401 -12.09002 -11.90938 -11.62242 -11.50169 -11.37414 -11.19748 -11.18785 -11.08172 -11.04155 -10.72886 -10.69341 -10.23493 -10.04450 -9.63203 -9.60290 -9.35932 -9.29984 -8.43090 -6.09017 -4.13671 2.41389 2.57679 2.74127 3.30615 3.31825 3.35084 3.41194 4.07811 4.18046 4.38995 4.43496 4.47741 4.80636 4.91781 4.94924 5.03081 5.07871 5.10559 5.20439 5.25082 5.27205 5.34522 5.46047 5.50108 5.60921 5.67445 5.73122 5.79260 5.82457 5.87871 6.10206 6.10761 6.23976 6.64955 7.01249 7.18772 7.57204 7.64086 7.87727 7.97274 8.19302 8.27405 8.91668 9.50517 11.02384 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.063496 B = 0.002080 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.867004 B =13460.321179 C =13676.744669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.355 6.355 12 C 0.456 3.544 13 O -0.524 6.524 14 C -0.100 4.100 15 C -0.129 4.129 16 C 0.516 3.484 17 O -0.537 6.537 18 N -0.728 5.728 19 C 0.139 3.861 20 C -0.136 4.136 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.132 4.132 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -29.187 0.669 29.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.002 3.998 11 O -0.271 6.271 12 C 0.300 3.700 13 O -0.415 6.415 14 C -0.138 4.138 15 C -0.169 4.169 16 C 0.303 3.697 17 O -0.413 6.413 18 N -0.380 5.380 19 C 0.034 3.966 20 C -0.175 4.175 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.170 4.170 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.236 0.764 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.441 -29.025 0.652 29.538 hybrid contribution 1.091 1.032 0.007 1.502 sum 6.532 -27.993 0.659 28.752 Atomic orbital electron populations 1.69964 1.06082 1.27096 1.49630 1.24989 0.94927 0.99384 0.94885 0.86524 0.79466 0.82490 0.78747 1.20085 1.21120 1.20092 1.20942 0.93120 0.90152 1.52357 0.92323 1.19173 0.94211 0.89031 0.98933 1.23644 0.96363 0.78860 1.00898 1.86535 1.42399 1.15848 1.82352 1.23504 0.86462 0.87505 0.72527 1.90617 1.15860 1.88516 1.46493 1.21015 0.98351 0.87273 1.07206 1.21434 0.98931 0.90418 1.06143 1.20689 0.87754 0.86029 0.75243 1.90728 1.14013 1.87677 1.48921 1.46206 1.10161 1.05525 1.76158 1.21656 0.96586 0.81678 0.96678 1.22819 1.02454 0.95679 0.96506 1.22494 0.98076 0.95880 0.99839 1.22362 0.98514 0.98799 0.96560 1.22446 0.99671 0.96120 0.98769 0.92645 0.95311 0.95323 0.92315 0.92322 0.87114 0.87115 0.87863 0.87847 0.76420 0.89047 0.91101 0.90952 0.91248 0.91310 0.91398 0.91437 0.90685 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.07 1.69 5.40 37.16 0.20 1.89 16 11 O -0.36 -7.21 10.22 -39.26 -0.40 -7.61 16 12 C 0.46 7.79 7.96 36.00 0.29 8.07 16 13 O -0.52 -9.86 15.73 -18.75 -0.29 -10.16 16 14 C -0.10 -1.27 5.10 -27.88 -0.14 -1.41 16 15 C -0.13 -1.30 4.99 -27.88 -0.14 -1.43 16 16 C 0.52 5.38 7.82 -10.99 -0.09 5.29 16 17 O -0.54 -7.58 15.65 5.55 0.09 -7.49 16 18 N -0.73 -5.44 5.04 -52.72 -0.27 -5.70 16 19 C 0.14 1.01 3.23 -66.81 -0.22 0.79 16 20 C -0.14 -0.97 6.54 -25.03 -0.16 -1.13 16 21 C -0.12 -0.67 6.91 -24.70 -0.17 -0.84 16 22 C -0.12 -0.57 6.83 -25.07 -0.17 -0.74 16 23 C -0.13 -0.67 6.57 -25.61 -0.17 -0.83 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 28 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 29 H 0.11 1.35 8.10 -51.93 -0.42 0.93 16 30 H 0.11 1.36 8.10 -51.94 -0.42 0.94 16 31 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 32 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.40 1.99 8.31 -40.82 -0.34 1.65 16 34 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 35 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 36 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.31 7.61 -51.93 -0.40 -0.09 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -33.30 353.47 -8.16 -41.46 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.00 Total: -2.96 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.33 Total: -3.52 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.47 Total: -31.55 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.61 Total: -25.26 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.30 -8.16 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767767006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.389 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds