Wall clock time and date at job start Tue Mar 31 2020 05:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47592 * 239.99805 * 2 1 3 5 5 C 1.52997 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47165 * 60.00300 * 5 4 2 7 7 C 1.50697 * 109.47240 * 180.02562 * 6 5 4 8 8 O 1.20828 * 120.00136 * 120.00215 * 7 6 5 9 9 O 1.34234 * 119.99749 * 299.99620 * 7 6 5 10 10 C 1.45206 * 116.99844 * 180.02562 * 9 7 6 11 11 C 1.50695 * 109.46597 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00441 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99666 * 179.97438 * 11 10 9 14 14 C 1.37091 * 120.00211 * 179.97438 * 13 11 10 15 15 H 1.07995 * 119.99972 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00300 * 179.97438 * 14 13 11 17 17 N 1.31418 * 119.99615 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47334 * 60.00389 * 18 16 14 20 20 H 1.48503 * 109.47010 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47124 * 300.00174 * 18 16 14 22 22 C 1.53002 * 109.46972 * 300.00293 * 6 5 4 23 23 C 1.52997 * 109.47415 * 59.99860 * 22 6 5 24 24 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 25 25 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 29 29 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 30 30 H 1.09000 * 109.47160 * 300.00333 * 4 2 1 31 31 H 1.09002 * 109.46719 * 60.00054 * 4 2 1 32 32 H 1.09000 * 109.47140 * 300.00346 * 5 4 2 33 33 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 34 34 H 1.08996 * 109.47134 * 59.99508 * 6 5 4 35 35 H 1.08996 * 109.46598 * 300.00309 * 10 9 7 36 36 H 1.09003 * 109.46732 * 60.00033 * 10 9 7 37 37 H 0.97003 * 119.99465 * 0.02562 * 13 11 10 38 38 H 0.97003 * 119.99450 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.46986 * 299.99742 * 22 6 5 40 40 H 1.09001 * 109.47601 * 180.02562 * 22 6 5 41 41 H 1.09001 * 109.46922 * 180.02562 * 23 22 6 42 42 H 1.09000 * 109.47140 * 59.99976 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 6 5.5875 -1.4405 -0.0003 8 8 6.1913 -0.9169 0.9060 9 8 6.2591 -2.0213 -1.0070 10 6 7.7091 -1.9828 -0.9409 11 6 8.2855 -2.6781 -2.1473 12 8 7.5470 -3.1592 -2.9804 13 7 9.6217 -2.7653 -2.3003 14 6 10.1462 -3.3983 -3.3975 15 1 9.4886 -3.8267 -4.1393 16 6 11.5238 -3.4878 -3.5555 17 7 12.3239 -2.9660 -2.6530 18 14 12.2383 -4.3497 -5.0509 19 1 11.7797 -3.6623 -6.2846 20 1 13.7213 -4.3097 -4.9836 21 1 11.7821 -5.7627 -5.0728 22 6 3.5705 -0.7204 1.2490 23 6 2.0405 -0.7209 1.2493 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.9330 0.3071 -1.2497 33 1 3.9334 -1.2342 -2.1397 34 1 3.7176 -2.4693 0.0000 35 1 8.0446 -0.9459 -0.9248 36 1 8.0450 -2.4875 -0.0351 37 1 10.2123 -2.3809 -1.6337 38 1 13.2856 -3.0288 -2.7632 39 1 3.9335 0.3074 1.2488 40 1 3.9345 -1.2336 2.1390 41 1 1.6772 -0.2067 2.1391 42 1 1.6776 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768691033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:21 Heat of formation + Delta-G solvation = -155.584152 kcal Electronic energy + Delta-G solvation = -22438.953977 eV Core-core repulsion = 18996.821470 eV Total energy + Delta-G solvation = -3442.132507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73263 -39.25163 -38.05730 -36.07118 -33.99028 -33.61794 -31.36911 -31.02336 -28.65239 -27.56888 -27.02478 -24.61585 -22.92242 -22.57907 -20.26698 -19.55553 -18.65962 -18.05188 -17.47009 -16.40706 -16.25557 -15.59027 -15.27251 -15.05565 -14.55803 -14.25591 -14.11783 -13.97442 -13.49922 -13.28408 -13.10356 -12.58190 -12.48705 -12.20415 -12.12952 -12.00986 -11.85679 -11.64350 -11.60462 -11.20510 -11.17650 -11.10462 -10.70380 -10.48545 -10.42524 -10.33051 -10.29706 -10.15823 -10.06743 -9.58696 -8.50420 -8.07333 -6.49080 -3.91123 2.37021 2.78143 3.15997 3.23100 3.28024 3.75317 4.11694 4.35358 4.43011 4.46979 4.74994 4.79403 4.85073 5.09591 5.14312 5.15997 5.16989 5.27214 5.31796 5.37500 5.44487 5.51532 5.58726 5.67220 5.68552 5.71549 5.72327 5.83771 5.85828 5.92331 5.97934 6.04355 6.08329 6.10254 6.23269 6.33987 6.70298 7.48337 7.88976 7.99745 8.49881 9.07921 9.40503 9.90681 10.68168 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041648 B = 0.002897 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.137185 B = 9662.820562 C =10033.117143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.076 4.076 7 C 0.460 3.540 8 O -0.516 6.516 9 O -0.324 6.324 10 C 0.059 3.941 11 C 0.439 3.561 12 O -0.576 6.576 13 N -0.553 5.553 14 C -0.303 4.303 15 H 0.105 0.895 16 C 0.025 3.975 17 N -0.898 5.898 18 Si 0.935 3.065 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.106 4.106 23 C -0.106 4.106 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.346 6.667 7.614 21.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.095 4.095 7 C 0.303 3.697 8 O -0.404 6.404 9 O -0.239 6.239 10 C -0.018 4.018 11 C 0.224 3.776 12 O -0.460 6.460 13 N -0.191 5.191 14 C -0.432 4.432 15 H 0.123 0.877 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.761 3.239 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.143 4.143 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.228 0.772 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.408 6.495 7.308 21.731 hybrid contribution 1.074 -0.133 -0.127 1.089 sum -18.334 6.362 7.181 20.692 Atomic orbital electron populations 1.21854 0.94587 1.01705 1.01636 1.20597 0.95205 0.95739 0.95382 1.21994 1.01747 0.95156 1.01503 1.21594 0.94583 1.00805 0.97326 1.21596 0.96035 1.01081 0.96608 1.21062 0.86852 1.03182 0.98379 1.23848 0.91758 0.74679 0.79437 1.90637 1.70637 1.42745 1.36431 1.86560 1.21095 1.70453 1.45770 1.22732 0.77034 1.02201 0.99858 1.19333 0.83597 0.86614 0.88092 1.90555 1.58825 1.51741 1.44872 1.41705 1.03970 1.50318 1.23073 1.19674 0.90675 1.32352 1.00478 0.87682 1.25314 0.95888 0.97593 0.98976 1.69613 1.04620 1.44726 1.34892 0.85856 0.77442 0.79739 0.80838 1.19751 1.20870 1.19755 1.21491 0.95277 1.01565 0.95980 1.21603 0.94696 1.00674 0.97403 0.92769 0.92680 0.92663 0.91882 0.92745 0.92832 0.91489 0.91369 0.91108 0.89865 0.87436 0.89676 0.89662 0.77171 0.91585 0.90639 0.91066 0.91488 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.48 37.16 0.31 -0.61 16 2 C -0.07 -0.53 0.77 -154.51 -0.12 -0.65 16 3 C -0.15 -1.16 7.78 37.16 0.29 -0.88 16 4 C -0.11 -0.90 4.73 -26.73 -0.13 -1.03 16 5 C -0.12 -1.25 4.86 -26.73 -0.13 -1.38 16 6 C -0.08 -0.89 2.63 -91.77 -0.24 -1.13 16 7 C 0.46 7.37 7.25 36.00 0.26 7.63 16 8 O -0.52 -9.16 15.73 -18.75 -0.29 -9.45 16 9 O -0.32 -6.15 9.66 -45.91 -0.44 -6.59 16 10 C 0.06 1.16 5.94 36.00 0.21 1.37 16 11 C 0.44 10.73 7.86 -10.99 -0.09 10.64 16 12 O -0.58 -16.14 16.08 -14.11 -0.23 -16.36 16 13 N -0.55 -14.15 5.29 -10.97 -0.06 -14.21 16 14 C -0.30 -8.41 9.68 -14.94 -0.14 -8.56 16 15 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 16 C 0.02 0.66 5.50 -17.46 -0.10 0.56 16 17 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 18 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C -0.11 -1.07 4.22 -26.73 -0.11 -1.19 16 23 C -0.11 -0.84 4.73 -26.73 -0.13 -0.97 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.56 4.81 -51.93 -0.25 0.32 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 33 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 36 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 37 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.08 0.82 6.38 -51.93 -0.33 0.49 16 40 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -31.65 339.99 -6.96 -38.62 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.66 Total: 6.82 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -0.10 Total: 3.80 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.67 Total: -37.75 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.97 Total: -32.40 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.65 -6.96 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768691033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.966 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds