Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 110.05440 * 2 1 4 4 C 1.54268 * 110.03260 * 238.58404 * 2 1 3 5 5 C 1.54888 * 104.19531 * 217.10210 * 4 2 1 6 6 C 1.54897 * 102.74966 * 37.94165 * 5 4 2 7 7 C 1.53877 * 110.03348 * 121.41544 * 2 1 3 8 8 H 1.09005 * 110.07241 * 238.59228 * 7 2 1 9 9 C 1.50697 * 110.03225 * 0.02562 * 7 2 1 10 10 O 1.20820 * 120.00148 * 85.87662 * 9 7 2 11 11 O 1.34235 * 119.99573 * 265.87688 * 9 7 2 12 12 C 1.45200 * 116.99562 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.47141 * 180.02562 * 12 11 9 14 14 O 1.21280 * 119.99613 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00133 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00075 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47261 * 180.02562 * 16 15 13 18 18 H 1.07997 * 119.99469 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00038 * 180.02562 * 17 16 15 20 20 N 1.31517 * 120.00106 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99999 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46989 * 59.99753 * 21 19 17 23 23 H 1.48504 * 109.46957 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46698 * 299.99912 * 21 19 17 25 25 H 1.09006 * 109.47197 * 296.80887 * 1 2 3 26 26 H 1.08999 * 109.47180 * 56.81195 * 1 2 3 27 27 H 1.09001 * 109.46600 * 176.81210 * 1 2 3 28 28 H 1.09000 * 109.46686 * 181.42110 * 3 2 1 29 29 H 1.08999 * 109.47026 * 301.41333 * 3 2 1 30 30 H 1.08997 * 109.47323 * 61.41891 * 3 2 1 31 31 H 1.09004 * 110.48535 * 98.42527 * 4 2 1 32 32 H 1.08994 * 110.48234 * 335.78389 * 4 2 1 33 33 H 1.08999 * 110.76047 * 279.63028 * 5 4 2 34 34 H 1.08997 * 110.75682 * 156.25654 * 5 4 2 35 35 H 1.08996 * 110.48968 * 203.37580 * 6 5 4 36 36 H 1.09002 * 110.59499 * 80.78818 * 6 5 4 37 37 H 1.09005 * 109.47489 * 60.00118 * 12 11 9 38 38 H 1.08999 * 109.47302 * 300.00366 * 12 11 9 39 39 H 0.97006 * 119.99955 * 0.02562 * 15 13 12 40 40 H 1.08995 * 109.46878 * 59.99667 * 16 15 13 41 41 H 1.09001 * 109.46950 * 299.99810 * 16 15 13 42 42 H 0.96993 * 119.99848 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4373 0.0000 4 6 2.0585 -0.7555 -1.2369 5 6 3.3137 -1.5007 -0.7192 6 6 2.8876 -1.9406 0.7036 7 6 2.0571 -0.7535 1.2337 8 1 2.6866 -0.0957 1.8332 9 6 0.9038 -1.2597 2.0612 10 8 0.3935 -2.3231 1.7997 11 8 0.4436 -0.5289 3.0889 12 6 -0.6692 -1.0787 3.8423 13 6 -1.0467 -0.1265 4.9477 14 8 -0.4380 0.9133 5.0865 15 7 -2.0605 -0.4304 5.7821 16 6 -2.4271 0.4950 6.8570 17 6 -3.5813 -0.0761 7.6398 18 1 -4.0002 -1.0325 7.3638 19 6 -4.1032 0.6229 8.7075 20 7 -3.5933 1.7878 9.0432 21 14 -5.5335 -0.0853 9.6782 22 1 -5.1360 -1.3909 10.2637 23 1 -5.9050 0.8528 10.7677 24 1 -6.6958 -0.2812 8.7750 25 1 -0.3634 0.4635 0.9172 26 1 -0.3633 0.5625 -0.8600 27 1 -0.3632 -1.0261 -0.0572 28 1 3.1443 1.4262 -0.0255 29 1 1.6761 1.9623 -0.8770 30 1 1.7175 1.9472 0.9024 31 1 2.3297 -0.0536 -2.0255 32 1 1.3143 -1.4659 -1.5966 33 1 4.1710 -0.8290 -0.6751 34 1 3.5326 -2.3678 -1.3423 35 1 3.7638 -2.1037 1.3310 36 1 2.2779 -2.8431 0.6593 37 1 -0.3790 -2.0377 4.2717 38 1 -1.5222 -1.2211 3.1788 39 1 -2.5471 -1.2623 5.6713 40 1 -2.7177 1.4538 6.4277 41 1 -1.5739 0.6376 7.5203 42 1 -3.9602 2.2793 9.7946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772614352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = -149.657218 kcal Electronic energy + Delta-G solvation = -22456.627322 eV Core-core repulsion = 19014.751827 eV Total energy + Delta-G solvation = -3441.875496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14023 -39.14580 -38.27768 -36.22995 -34.24930 -32.52564 -32.41562 -30.27392 -28.86788 -27.58886 -26.65844 -25.04459 -22.84181 -22.01287 -20.70542 -19.93951 -18.99064 -17.71952 -17.39827 -16.69701 -16.30094 -15.67415 -15.39214 -15.20761 -14.79574 -14.57961 -14.16073 -13.81477 -13.52639 -13.22744 -13.11784 -12.77831 -12.55224 -12.18696 -12.09026 -11.99017 -11.80486 -11.67904 -11.38247 -11.11192 -11.03903 -10.92455 -10.90952 -10.85557 -10.76746 -10.61037 -10.37770 -10.34809 -9.46296 -9.17325 -8.78449 -7.99261 -6.20112 -4.27712 2.14590 2.46856 3.17928 3.23769 3.28642 3.30121 3.94976 4.11660 4.18593 4.32129 4.47018 4.83126 4.96622 4.97121 5.01844 5.06939 5.15233 5.15901 5.20435 5.24637 5.30855 5.34839 5.45786 5.55313 5.59981 5.61570 5.71411 5.78593 5.81882 5.94401 6.03608 6.05581 6.13171 6.40508 7.21996 7.30526 7.45161 7.58953 7.73790 7.91456 8.49612 8.70531 8.96059 9.38695 10.90016 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041289 B = 0.002841 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.982007 B = 9852.936155 C =10071.442461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.081 4.081 8 H 0.107 0.893 9 C 0.473 3.527 10 O -0.512 6.512 11 O -0.328 6.328 12 C 0.047 3.953 13 C 0.499 3.501 14 O -0.534 6.534 15 N -0.707 5.707 16 C 0.252 3.748 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.744 -6.320 -19.936 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.053 4.053 3 C -0.199 4.199 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.100 4.100 8 H 0.125 0.875 9 C 0.317 3.683 10 O -0.401 6.401 11 O -0.243 6.243 12 C -0.031 4.031 13 C 0.282 3.718 14 O -0.411 6.411 15 N -0.357 5.357 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.225 0.775 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.973 -5.689 -19.709 23.752 hybrid contribution -1.220 -0.835 0.689 1.631 sum 10.752 -6.524 -19.020 22.802 Atomic orbital electron populations 1.22210 0.94055 1.02743 1.02852 1.21072 0.95937 0.95584 0.92683 1.21953 1.00987 0.94218 1.02695 1.22515 0.97393 0.98892 0.96430 1.22463 0.97761 1.00098 0.95538 1.22457 0.99167 0.97266 0.96531 1.21892 0.93390 0.99388 0.95341 0.87470 1.23591 0.83924 0.82438 0.78382 1.90628 1.58096 1.22972 1.68388 1.86607 1.47209 1.49175 1.41326 1.22852 0.89016 0.97452 0.93736 1.19902 0.81764 0.87140 0.82967 1.90706 1.52606 1.25524 1.72295 1.46369 1.32713 1.24590 1.32040 1.19165 0.95702 0.88561 0.83424 1.21172 1.16588 1.06038 1.14638 0.91823 1.24950 0.97313 0.94747 0.96947 1.69961 1.41252 1.13059 1.27941 0.86449 0.82019 0.78849 0.79448 1.20025 1.21027 1.20025 0.91827 0.91708 0.91697 0.92204 0.92137 0.91673 0.91041 0.91080 0.91147 0.91032 0.90829 0.89507 0.88621 0.88683 0.77452 0.95273 0.95278 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 7.23 37.16 0.27 -1.45 16 2 C -0.05 -0.49 0.94 -153.38 -0.14 -0.63 16 3 C -0.14 -1.18 8.15 37.16 0.30 -0.88 16 4 C -0.11 -0.87 5.90 -25.07 -0.15 -1.02 16 5 C -0.12 -0.84 6.91 -24.73 -0.17 -1.01 16 6 C -0.12 -1.03 6.31 -25.07 -0.16 -1.19 16 7 C -0.08 -0.85 3.06 -90.65 -0.28 -1.13 16 8 H 0.11 1.07 7.67 -51.93 -0.40 0.67 16 9 C 0.47 6.52 4.79 36.00 0.17 6.69 16 10 O -0.51 -7.73 14.65 -18.74 -0.27 -8.01 16 11 O -0.33 -5.28 9.39 -45.92 -0.43 -5.71 16 12 C 0.05 0.73 5.94 36.01 0.21 0.95 16 13 C 0.50 10.11 7.91 -10.99 -0.09 10.02 16 14 O -0.53 -13.12 16.50 -14.10 -0.23 -13.35 16 15 N -0.71 -14.72 5.55 -61.47 -0.34 -15.06 16 16 C 0.25 6.60 5.43 -5.19 -0.03 6.58 16 17 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 21 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H 0.06 0.79 7.13 -51.93 -0.37 0.42 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.75 6.95 -51.93 -0.36 0.39 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.46 7.84 -51.93 -0.41 0.05 16 32 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.89 6.89 -51.93 -0.36 0.53 16 37 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 38 H 0.10 1.30 8.13 -51.93 -0.42 0.87 16 39 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -32.59 345.61 -7.65 -40.24 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.82 Total: 2.53 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -0.47 Total: 3.62 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.40 Total: -40.20 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.94 Total: -27.07 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.59 -7.65 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772614352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.415 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds