Wall clock time and date at job start Tue Mar 31 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47290 * 2 1 4 4 C 1.53001 * 109.46780 * 119.99658 * 2 1 3 5 5 C 1.52996 * 115.56404 * 319.09381 * 4 2 1 6 6 C 1.53005 * 117.49560 * 104.77947 * 4 2 1 7 7 C 1.53001 * 59.99996 * 107.48839 * 6 4 2 8 8 H 1.09005 * 117.50198 * 107.48666 * 7 6 4 9 9 C 1.50695 * 117.50125 * 252.50819 * 7 6 4 10 10 O 1.20827 * 119.99625 * 23.15409 * 9 7 6 11 11 O 1.34223 * 120.00206 * 203.14656 * 9 7 6 12 12 C 1.45204 * 117.00163 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47219 * 180.02562 * 12 11 9 14 14 O 1.21280 * 120.00346 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99764 * 179.97438 * 13 12 11 16 16 C 1.46506 * 119.99800 * 179.97438 * 15 13 12 17 17 C 1.50694 * 109.47004 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00384 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99994 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99953 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99989 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47470 * 59.99686 * 21 19 17 23 23 H 1.48506 * 109.46775 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47004 * 299.99459 * 21 19 17 25 25 H 1.08997 * 109.47130 * 300.00135 * 1 2 3 26 26 H 1.09000 * 109.46625 * 60.00173 * 1 2 3 27 27 H 1.09000 * 109.46850 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47105 * 239.99361 * 2 1 3 29 29 H 1.09000 * 109.47083 * 177.80313 * 3 2 1 30 30 H 1.08998 * 109.47048 * 297.80297 * 3 2 1 31 31 H 1.09004 * 109.46676 * 57.80214 * 3 2 1 32 32 H 1.09001 * 109.46852 * 274.30839 * 5 4 2 33 33 H 1.09002 * 109.47412 * 34.30703 * 5 4 2 34 34 H 1.09000 * 109.47646 * 154.31071 * 5 4 2 35 35 H 1.08991 * 117.49901 * 0.02562 * 6 4 2 36 36 H 1.08998 * 117.49825 * 214.97509 * 6 4 2 37 37 H 1.09001 * 109.47157 * 300.00634 * 12 11 9 38 38 H 1.09002 * 109.46795 * 60.00358 * 12 11 9 39 39 H 0.96991 * 120.00250 * 0.02562 * 15 13 12 40 40 H 1.09000 * 109.47009 * 300.00437 * 16 15 13 41 41 H 1.09002 * 109.46977 * 60.00658 * 16 15 13 42 42 H 0.97002 * 119.99798 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.2765 -0.4235 2.5413 6 6 2.6018 -2.1330 1.0701 7 6 3.5465 -0.9647 1.3590 8 1 3.9938 -0.9126 2.3517 9 6 4.4146 -0.4757 0.2284 10 8 4.0871 -0.6801 -0.9166 11 8 5.5513 0.1870 0.4932 12 6 6.3378 0.6279 -0.6450 13 6 7.5686 1.3474 -0.1566 14 8 7.7641 1.4756 1.0334 15 7 8.4528 1.8476 -1.0425 16 6 9.6491 2.5475 -0.5677 17 6 10.4653 3.0050 -1.7490 18 1 10.1271 2.7950 -2.7529 19 6 11.6445 3.6907 -1.5481 20 7 12.0566 3.9460 -0.3255 21 14 12.6559 4.2584 -3.0124 22 1 11.8438 5.1786 -3.8482 23 1 13.8686 4.9678 -2.5311 24 1 13.0595 3.0805 -3.8218 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1294 1.4427 0.0394 30 1 1.7093 1.9448 -0.9090 31 1 1.6449 1.9675 0.8697 32 1 1.6810 0.4773 3.0030 33 1 0.2213 -0.2725 2.3134 34 1 1.3833 -1.2630 3.2283 35 1 2.6086 -2.5478 0.0622 36 1 2.4276 -2.8496 1.8727 37 1 6.6344 -0.2368 -1.2386 38 1 5.7416 1.3029 -1.2590 39 1 8.2967 1.7448 -1.9942 40 1 9.3525 3.4126 0.0255 41 1 10.2451 1.8727 0.0467 42 1 12.8860 4.4288 -0.1842 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775067734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:07 Heat of formation + Delta-G solvation = -114.683003 kcal Electronic energy + Delta-G solvation = -22177.709362 eV Core-core repulsion = 18737.350462 eV Total energy + Delta-G solvation = -3440.358900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04540 -39.19155 -38.27545 -36.14347 -34.24839 -33.77211 -32.41350 -29.56697 -28.87982 -27.24791 -26.82779 -24.66332 -22.88836 -22.52407 -20.64026 -19.94108 -18.91063 -17.78284 -17.38198 -16.66540 -16.30088 -15.54996 -15.52295 -15.08359 -14.61989 -14.45492 -14.20296 -13.85705 -13.71346 -13.26868 -12.99342 -12.77706 -12.73966 -12.53933 -12.08668 -11.97803 -11.90562 -11.77124 -11.49587 -11.38860 -11.10222 -11.03154 -10.90769 -10.67282 -10.47551 -10.35114 -10.28048 -10.05284 -9.46098 -9.17455 -8.78263 -7.99128 -6.19878 -4.27454 1.96399 2.40177 3.17692 3.23942 3.28793 3.30270 3.47048 3.94309 4.22168 4.31778 4.40335 4.44501 4.62341 4.85614 4.96901 5.04842 5.14857 5.16091 5.18716 5.24101 5.34117 5.37836 5.41672 5.45998 5.48201 5.61202 5.63874 5.72263 5.77615 5.78984 5.98635 6.09042 6.19760 6.42172 7.22259 7.30640 7.45455 7.59150 7.74127 7.91663 8.49681 8.70699 8.96180 9.38888 10.90241 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.037367 B = 0.002745 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.135600 B =10199.633438 C =10396.600770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.144 4.144 4 C -0.082 4.082 5 C -0.124 4.124 6 C -0.137 4.137 7 C -0.166 4.166 8 H 0.134 0.866 9 C 0.494 3.506 10 O -0.511 6.511 11 O -0.326 6.326 12 C 0.049 3.951 13 C 0.499 3.501 14 O -0.534 6.534 15 N -0.707 5.707 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.807 -10.067 1.425 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C -0.202 4.202 4 C -0.082 4.082 5 C -0.181 4.181 6 C -0.174 4.174 7 C -0.185 4.185 8 H 0.152 0.848 9 C 0.338 3.662 10 O -0.400 6.400 11 O -0.240 6.240 12 C -0.028 4.028 13 C 0.282 3.718 14 O -0.411 6.411 15 N -0.357 5.357 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.226 0.774 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.537 -9.899 2.060 24.701 hybrid contribution 0.825 0.321 -1.347 1.611 sum -21.713 -9.578 0.713 23.742 Atomic orbital electron populations 1.21877 0.94633 1.01773 1.01838 1.20846 0.95774 0.96164 0.96168 1.21822 1.00898 0.95620 1.01813 1.21676 0.90286 0.98247 0.98000 1.21525 1.00356 1.02191 0.93979 1.23361 0.99166 0.90615 1.04214 1.21905 0.91497 1.06675 0.98410 0.84806 1.22499 0.79607 0.74630 0.89497 1.90624 1.71700 1.54783 1.22919 1.86551 1.33201 1.66544 1.37738 1.22858 0.92131 1.00475 0.87365 1.19893 0.83990 0.80554 0.87340 1.90709 1.76175 1.58287 1.15935 1.46364 1.24118 1.56298 1.08912 1.19170 0.80038 0.91877 0.95778 1.21170 1.06866 1.37951 0.92440 0.91820 1.24953 0.97276 0.95471 0.96268 1.69964 1.22602 1.39594 1.20047 0.86447 0.79372 0.78904 0.82028 1.20029 1.21030 1.20022 0.92215 0.92557 0.92540 0.89095 0.93213 0.92376 0.92513 0.91605 0.90748 0.92006 0.87408 0.87318 0.88561 0.88619 0.77446 0.95268 0.95260 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.47 37.16 0.31 -0.72 16 2 C -0.07 -0.67 2.15 -90.62 -0.20 -0.86 16 3 C -0.14 -1.50 8.90 37.16 0.33 -1.17 16 4 C -0.08 -0.71 1.77 -154.50 -0.27 -0.99 16 5 C -0.12 -0.84 9.61 37.16 0.36 -0.48 16 6 C -0.14 -1.14 9.34 -26.73 -0.25 -1.39 16 7 C -0.17 -1.77 5.95 -91.77 -0.55 -2.32 16 8 H 0.13 1.33 8.14 -51.93 -0.42 0.90 16 9 C 0.49 6.88 5.29 36.00 0.19 7.07 16 10 O -0.51 -7.55 13.74 -18.75 -0.26 -7.81 16 11 O -0.33 -5.35 9.75 -45.88 -0.45 -5.79 16 12 C 0.05 0.77 5.94 36.00 0.21 0.99 16 13 C 0.50 10.18 7.91 -10.98 -0.09 10.10 16 14 O -0.53 -13.25 16.50 -14.10 -0.23 -13.48 16 15 N -0.71 -14.77 5.55 -61.47 -0.34 -15.11 16 16 C 0.25 6.62 5.43 -5.19 -0.03 6.59 16 17 C -0.55 -14.68 9.28 -34.44 -0.32 -15.00 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 21 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 25 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 1.02 6.32 -51.93 -0.33 0.69 16 29 H 0.05 0.62 5.77 -51.93 -0.30 0.32 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.43 5.62 -51.93 -0.29 0.14 16 34 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 35 H 0.11 0.98 7.81 -51.93 -0.41 0.57 16 36 H 0.11 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 38 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 39 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -32.80 348.61 -7.28 -40.08 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.58 Total: 2.87 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -0.39 Total: 3.48 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.40 Total: -40.30 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.94 Total: -27.09 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.80 -7.28 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775067734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.605 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds