Wall clock time and date at job start Tue Mar 31 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 C 1.52995 * 109.47574 * 240.00128 * 2 1 3 5 5 C 1.53004 * 115.55156 * 79.93880 * 4 2 1 6 6 C 1.52998 * 117.49910 * 294.27258 * 4 2 1 7 7 C 1.52994 * 60.00230 * 252.50758 * 6 4 2 8 8 H 1.08999 * 117.49969 * 252.51073 * 7 6 4 9 9 C 1.50697 * 117.50101 * 107.48858 * 7 6 4 10 10 O 1.20830 * 120.00180 * 27.60517 * 9 7 6 11 11 O 1.34227 * 120.00348 * 207.61675 * 9 7 6 12 12 C 1.45200 * 117.00490 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.47225 * 179.97438 * 12 11 9 14 14 O 1.21276 * 120.00025 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99897 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00043 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.47059 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00195 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99966 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99812 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00062 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46933 * 60.00415 * 21 19 17 23 23 H 1.48503 * 109.47192 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47599 * 300.00235 * 21 19 17 25 25 H 1.09003 * 109.47240 * 60.00170 * 1 2 3 26 26 H 1.09000 * 109.47607 * 300.00178 * 1 2 3 27 27 H 1.09001 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47240 * 119.99830 * 2 1 3 29 29 H 1.09000 * 109.47289 * 65.34914 * 3 2 1 30 30 H 1.09004 * 109.47237 * 185.34524 * 3 2 1 31 31 H 1.09002 * 109.47525 * 305.34615 * 3 2 1 32 32 H 1.09004 * 109.47072 * 85.58978 * 5 4 2 33 33 H 1.08997 * 109.47105 * 205.58292 * 5 4 2 34 34 H 1.08995 * 109.46972 * 325.58878 * 5 4 2 35 35 H 1.09003 * 117.49901 * 359.97438 * 6 4 2 36 36 H 1.09004 * 117.49970 * 144.99647 * 6 4 2 37 37 H 1.09001 * 109.46611 * 299.99486 * 12 11 9 38 38 H 1.09003 * 109.46872 * 59.99482 * 12 11 9 39 39 H 0.97001 * 119.99981 * 359.97438 * 15 13 12 40 40 H 1.09008 * 109.46939 * 299.99852 * 16 15 13 41 41 H 1.09000 * 109.47063 * 59.99321 * 16 15 13 42 42 H 0.97005 * 120.00007 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0327 0.1046 -2.5372 6 6 1.7496 -2.2186 -1.3685 7 6 3.1699 -1.7366 -1.0669 8 1 3.9085 -1.8162 -1.8646 9 6 3.6953 -1.9497 0.3293 10 8 3.2786 -2.8654 0.9984 11 8 4.6261 -1.1222 0.8298 12 6 5.0857 -1.3872 2.1814 13 6 6.1218 -0.3640 2.5694 14 8 6.4411 0.5035 1.7843 15 7 6.6929 -0.4123 3.7893 16 6 7.6997 0.5827 4.1667 17 6 8.1768 0.3075 5.5695 18 1 7.7704 -0.5250 6.1245 19 6 9.1322 1.1186 6.1443 20 7 9.6275 2.1321 5.4682 21 14 9.7230 0.7779 7.8833 22 1 10.3205 -0.5801 7.9459 23 1 10.7446 1.7857 8.2654 24 1 8.5741 0.8568 8.8209 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.7569 1.9280 0.9340 30 1 3.1257 1.4441 -0.0957 31 1 1.6005 1.9833 -0.8382 32 1 2.9527 0.6856 -2.6015 33 1 1.9637 -0.5627 -3.3962 34 1 1.1766 0.7792 -2.5314 35 1 1.1954 -2.6900 -0.5568 36 1 1.5533 -2.6154 -2.3646 37 1 4.2424 -1.3299 2.8697 38 1 5.5249 -2.3838 2.2270 39 1 6.4367 -1.1055 4.4176 40 1 8.5432 0.5251 3.4786 41 1 7.2607 1.5793 4.1207 42 1 10.2993 2.7030 5.8727 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775067737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:10 Heat of formation + Delta-G solvation = -118.476115 kcal Electronic energy + Delta-G solvation = -22328.779182 eV Core-core repulsion = 18888.255801 eV Total energy + Delta-G solvation = -3440.523382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94991 -39.13455 -38.33890 -36.28289 -34.24961 -33.67481 -32.41487 -29.50701 -28.84468 -27.30391 -26.72725 -24.55526 -23.00532 -22.52704 -20.65029 -19.93295 -18.87244 -17.57482 -17.45078 -16.80788 -16.39741 -15.55421 -15.46692 -15.12443 -14.52813 -14.38871 -14.18587 -13.92751 -13.62992 -13.00342 -12.93356 -12.86220 -12.59298 -12.53784 -12.20242 -12.00340 -11.97374 -11.76986 -11.54220 -11.33328 -11.04086 -10.91207 -10.86358 -10.68424 -10.60200 -10.45233 -10.35194 -9.94358 -9.46311 -9.17593 -8.78423 -7.99273 -6.20118 -4.27681 2.04749 2.37265 3.17581 3.23810 3.28686 3.30085 3.34877 3.93983 4.25517 4.31105 4.36683 4.48489 4.62542 4.88110 5.01349 5.09242 5.15697 5.16172 5.19358 5.23465 5.33953 5.37637 5.43958 5.49491 5.55098 5.67005 5.68504 5.73610 5.80667 5.89766 6.02169 6.15426 6.26966 6.35700 7.21877 7.30369 7.45146 7.58600 7.70682 7.91405 8.49474 8.70468 8.95899 9.38688 10.89981 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030049 B = 0.003010 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.584043 B = 9300.406966 C = 9547.640985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.148 4.148 4 C -0.090 4.090 5 C -0.116 4.116 6 C -0.140 4.140 7 C -0.159 4.159 8 H 0.140 0.860 9 C 0.494 3.506 10 O -0.510 6.510 11 O -0.322 6.322 12 C 0.047 3.953 13 C 0.500 3.500 14 O -0.533 6.533 15 N -0.707 5.707 16 C 0.252 3.748 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.538 -6.744 -13.453 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.205 4.205 4 C -0.090 4.090 5 C -0.173 4.173 6 C -0.176 4.176 7 C -0.178 4.178 8 H 0.158 0.842 9 C 0.337 3.663 10 O -0.399 6.399 11 O -0.236 6.236 12 C -0.031 4.031 13 C 0.283 3.717 14 O -0.410 6.410 15 N -0.357 5.357 16 C 0.132 3.868 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.225 0.775 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.240 -6.184 -13.767 22.913 hybrid contribution 0.441 -0.708 1.461 1.682 sum -16.799 -6.892 -12.307 21.935 Atomic orbital electron populations 1.21795 0.94422 1.01844 1.01914 1.20734 0.96019 0.96790 0.94752 1.21845 1.02281 0.94577 1.01771 1.21734 0.98363 0.90917 0.97974 1.21404 1.02886 0.99468 0.93537 1.23289 0.94297 0.96252 1.03801 1.21950 0.93987 1.09113 0.92781 0.84212 1.22630 0.76332 0.79064 0.88288 1.90661 1.57463 1.31297 1.60484 1.86582 1.53006 1.53092 1.30949 1.22880 0.98478 1.00035 0.81671 1.19871 0.82682 0.85769 0.83396 1.90707 1.62869 1.36752 1.50674 1.46367 1.42194 1.33505 1.13648 1.19166 0.85564 0.86741 0.95362 1.21172 1.23879 1.14554 0.98840 0.91824 1.24950 0.95835 0.94691 0.98477 1.69964 1.28373 1.16400 1.37466 0.86448 0.78552 0.78131 0.83629 1.20031 1.21030 1.20021 0.92373 0.92435 0.92624 0.91655 0.92531 0.91510 0.92376 0.91324 0.92196 0.91381 0.87620 0.87278 0.88663 0.88577 0.77457 0.95273 0.95267 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.07 37.15 0.34 -0.84 16 2 C -0.06 -0.66 2.66 -90.62 -0.24 -0.90 16 3 C -0.15 -1.56 8.56 37.16 0.32 -1.24 16 4 C -0.09 -0.82 1.78 -154.51 -0.28 -1.10 16 5 C -0.12 -0.84 8.67 37.16 0.32 -0.52 16 6 C -0.14 -1.19 8.99 -26.74 -0.24 -1.43 16 7 C -0.16 -1.70 6.01 -91.78 -0.55 -2.25 16 8 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 9 C 0.49 7.00 5.79 36.00 0.21 7.21 16 10 O -0.51 -8.05 16.36 -18.75 -0.31 -8.35 16 11 O -0.32 -5.23 9.75 -45.89 -0.45 -5.68 16 12 C 0.05 0.73 5.94 36.01 0.21 0.95 16 13 C 0.50 10.11 7.91 -10.98 -0.09 10.02 16 14 O -0.53 -13.05 16.50 -14.10 -0.23 -13.29 16 15 N -0.71 -14.70 5.55 -61.47 -0.34 -15.04 16 16 C 0.25 6.60 5.43 -5.20 -0.03 6.57 16 17 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -25.85 13.29 55.43 0.74 -25.12 16 21 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H 0.06 0.41 7.64 -51.93 -0.40 0.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.44 7.69 -51.93 -0.40 0.04 16 28 H 0.07 0.81 6.46 -51.93 -0.34 0.47 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.51 7.03 -51.93 -0.37 0.14 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 34 H 0.07 0.44 6.92 -51.93 -0.36 0.08 16 35 H 0.11 1.00 7.77 -51.93 -0.40 0.59 16 36 H 0.11 0.68 8.05 -51.93 -0.42 0.26 16 37 H 0.10 1.31 8.13 -51.93 -0.42 0.88 16 38 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 39 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.03 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -32.90 354.81 -7.47 -40.38 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.77 Total: 2.92 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.44 Total: 3.18 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.40 Total: -40.16 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.99 Total: -27.32 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.90 -7.47 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775067737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.101 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds