Wall clock time and date at job start Tue Mar 31 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 C 1.52997 * 109.46770 * 120.00359 * 2 1 3 5 5 C 1.53003 * 115.56080 * 325.68597 * 4 2 1 6 6 C 1.52997 * 117.50426 * 111.37918 * 4 2 1 7 7 C 1.53001 * 60.00175 * 107.48576 * 6 4 2 8 8 H 1.08995 * 117.50213 * 252.48770 * 7 6 4 9 9 C 1.50706 * 117.49880 * 107.49051 * 7 6 4 10 10 O 1.20820 * 119.99714 * 291.39600 * 9 7 6 11 11 O 1.34223 * 119.99666 * 111.39034 * 9 7 6 12 12 C 1.45209 * 116.99725 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.46951 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00472 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99538 * 179.97438 * 13 12 11 16 16 C 1.46499 * 119.99665 * 179.72653 * 15 13 12 17 17 C 1.50703 * 109.47138 * 180.28062 * 16 15 13 18 18 H 1.08001 * 120.00037 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00502 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99575 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47245 * 60.00392 * 21 19 17 23 23 H 1.48504 * 109.46709 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47176 * 299.99915 * 21 19 17 25 25 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47236 * 300.00127 * 1 2 3 27 27 H 1.09003 * 109.46970 * 60.00523 * 1 2 3 28 28 H 1.09000 * 109.47123 * 239.99369 * 2 1 3 29 29 H 1.08994 * 109.47089 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46728 * 300.00149 * 3 2 1 31 31 H 1.09006 * 109.46871 * 59.99749 * 3 2 1 32 32 H 1.09010 * 109.46926 * 274.31524 * 5 4 2 33 33 H 1.08994 * 109.47120 * 34.31167 * 5 4 2 34 34 H 1.09004 * 109.47281 * 154.31821 * 5 4 2 35 35 H 1.08996 * 117.49661 * 359.97438 * 6 4 2 36 36 H 1.08999 * 117.50014 * 214.97397 * 6 4 2 37 37 H 1.09003 * 109.46563 * 60.00429 * 12 11 9 38 38 H 1.08993 * 109.46953 * 300.00733 * 12 11 9 39 39 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 40 40 H 1.09009 * 109.47454 * 300.27637 * 16 15 13 41 41 H 1.08998 * 109.47492 * 60.27932 * 16 15 13 42 42 H 0.96997 * 120.00009 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.1851 -0.5487 2.5063 6 6 2.7418 -2.0663 1.0514 7 6 3.5550 -0.8281 1.4343 8 1 4.1887 -0.3848 0.6663 9 6 4.0910 -0.7553 2.8409 10 8 3.3315 -0.6177 3.7704 11 8 5.4121 -0.8434 3.0610 12 6 5.8572 -0.7648 4.4410 13 6 7.3588 -0.8821 4.4919 14 8 7.9916 -1.0180 3.4663 15 7 7.9985 -0.8349 5.6773 16 6 9.4577 -0.9550 5.7273 17 6 9.9192 -0.8784 7.1599 18 1 9.1977 -0.7525 7.9537 19 6 11.2626 -0.9681 7.4571 20 7 12.1413 -1.1199 6.4905 21 14 11.8346 -0.8725 9.2328 22 1 11.2205 -1.9782 10.0110 23 1 13.3139 -0.9930 9.2834 24 1 11.4244 0.4303 9.8156 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.4775 0.3662 3.0218 33 1 0.1338 -0.4871 2.2252 34 1 1.3350 -1.4021 3.1677 35 1 2.8400 -2.4375 0.0313 36 1 2.5946 -2.8282 1.8169 37 1 5.4100 -1.5774 5.0137 38 1 5.5522 0.1908 4.8672 39 1 7.4924 -0.7259 6.4976 40 1 9.7586 -1.9113 5.2993 41 1 9.9088 -0.1434 5.1564 42 1 13.0863 -1.1833 6.6997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775067742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:14 Heat of formation + Delta-G solvation = -112.541227 kcal Electronic energy + Delta-G solvation = -21854.882135 eV Core-core repulsion = 18414.616110 eV Total energy + Delta-G solvation = -3440.266026 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96080 -39.22323 -38.34929 -36.22059 -34.24963 -33.76596 -32.41445 -29.51622 -28.84063 -27.18781 -26.83312 -24.84330 -22.87091 -22.54490 -20.70591 -19.94145 -18.74568 -17.86381 -17.36093 -16.62198 -16.19181 -15.85216 -15.43132 -15.10287 -14.73562 -14.54505 -14.24143 -13.74222 -13.38063 -13.31918 -13.04963 -12.84317 -12.72501 -12.60362 -12.30263 -11.98780 -11.86374 -11.77044 -11.50329 -11.48589 -11.03751 -10.92687 -10.90862 -10.67379 -10.44284 -10.35256 -10.32823 -9.95467 -9.46159 -9.17188 -8.78368 -7.99271 -6.19891 -4.27503 2.01471 2.38433 3.17653 3.23908 3.28737 3.30203 3.39600 3.93235 4.26167 4.28837 4.34438 4.46890 4.58087 4.85462 4.89386 5.00281 5.13307 5.15817 5.16066 5.24219 5.34276 5.34833 5.40016 5.47679 5.54745 5.62446 5.63844 5.71260 5.76046 5.86874 5.97489 6.00224 6.21651 6.43962 7.22126 7.30528 7.45288 7.59018 7.73789 7.91560 8.49572 8.70616 8.96096 9.38815 10.90185 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.048004 B = 0.002493 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.146114 B =11227.975504 C =11430.332851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.060 4.060 3 C -0.149 4.149 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.141 4.141 7 C -0.162 4.162 8 H 0.136 0.864 9 C 0.491 3.509 10 O -0.506 6.506 11 O -0.326 6.326 12 C 0.049 3.951 13 C 0.499 3.501 14 O -0.534 6.534 15 N -0.707 5.707 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 1.522 -10.920 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.206 4.206 4 C -0.083 4.083 5 C -0.169 4.169 6 C -0.178 4.178 7 C -0.180 4.180 8 H 0.153 0.847 9 C 0.334 3.666 10 O -0.395 6.395 11 O -0.241 6.241 12 C -0.028 4.028 13 C 0.282 3.718 14 O -0.411 6.411 15 N -0.357 5.357 16 C 0.131 3.869 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.226 0.774 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.871 1.447 -11.391 25.592 hybrid contribution 0.384 0.106 1.536 1.587 sum -22.487 1.553 -9.855 24.601 Atomic orbital electron populations 1.21905 0.94509 1.01989 1.01982 1.20711 0.96101 0.96044 0.94973 1.21849 1.01386 0.95438 1.01926 1.21748 0.89958 0.98515 0.98070 1.21530 0.97881 1.03510 0.94023 1.23300 1.00458 0.90584 1.03496 1.21852 0.95690 1.07383 0.93123 0.84659 1.22661 0.80485 0.72421 0.91017 1.90657 1.58155 1.45420 1.45268 1.86561 1.24805 1.82599 1.30099 1.22856 0.94696 1.04351 0.80929 1.19899 0.87840 0.78892 0.85152 1.90710 1.67809 1.49105 1.33503 1.46366 1.11094 1.71643 1.06605 1.19172 0.72326 0.97861 0.97528 1.21170 0.92753 1.52828 0.91666 0.91820 1.24956 0.96391 0.94610 0.98038 1.69961 1.02241 1.47980 1.32003 0.86444 0.77656 0.78728 0.83901 1.20028 1.21038 1.20031 0.92423 0.91886 0.92584 0.90727 0.92409 0.92487 0.92377 0.91379 0.92068 0.91748 0.87207 0.87951 0.88602 0.88566 0.77439 0.95269 0.95256 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.20 37.16 0.30 -0.56 16 2 C -0.06 -0.41 2.99 -90.62 -0.27 -0.68 16 3 C -0.15 -1.07 9.03 37.16 0.34 -0.73 16 4 C -0.08 -0.72 1.91 -154.51 -0.29 -1.01 16 5 C -0.11 -1.06 7.74 37.16 0.29 -0.78 16 6 C -0.14 -1.20 9.52 -26.73 -0.25 -1.45 16 7 C -0.16 -1.70 5.50 -91.77 -0.51 -2.21 16 8 H 0.14 1.31 7.61 -51.93 -0.40 0.91 16 9 C 0.49 6.79 7.72 36.01 0.28 7.07 16 10 O -0.51 -7.45 12.86 -18.75 -0.24 -7.69 16 11 O -0.33 -5.33 9.76 -45.88 -0.45 -5.77 16 12 C 0.05 0.77 5.94 36.00 0.21 0.98 16 13 C 0.50 10.17 7.91 -10.99 -0.09 10.08 16 14 O -0.53 -13.26 16.50 -14.10 -0.23 -13.49 16 15 N -0.71 -14.76 5.55 -61.47 -0.34 -15.10 16 16 C 0.25 6.61 5.43 -5.19 -0.03 6.59 16 17 C -0.55 -14.67 9.28 -34.44 -0.32 -14.99 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.88 -25.91 13.29 55.43 0.74 -25.17 16 21 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.38 6.45 -51.93 -0.33 0.05 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.47 7.90 -51.93 -0.41 0.06 16 29 H 0.06 0.45 7.29 -51.93 -0.38 0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.74 7.26 -51.92 -0.38 0.36 16 33 H 0.06 0.47 5.58 -51.93 -0.29 0.18 16 34 H 0.06 0.69 7.02 -51.93 -0.36 0.32 16 35 H 0.11 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 37 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 38 H 0.10 1.31 8.13 -51.93 -0.42 0.88 16 39 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 40 H 0.03 0.85 8.14 -51.92 -0.42 0.42 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -32.74 349.99 -7.35 -40.09 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.64 Total: 2.20 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.44 Total: 3.96 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.40 Total: -40.27 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.92 Total: -26.95 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.74 -7.35 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775067742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.454 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds