Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 108.85745 * 2 1 4 4 O 1.20824 * 120.00323 * 241.43537 * 3 2 1 5 5 O 1.34232 * 120.00106 * 61.43727 * 3 2 1 6 6 C 1.45197 * 116.99983 * 180.02562 * 5 3 2 7 7 C 1.50709 * 109.46751 * 180.02562 * 6 5 3 8 8 O 1.21287 * 120.00058 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99392 * 180.02562 * 7 6 5 10 10 C 1.37102 * 119.99348 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00645 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99719 * 179.97438 * 10 9 7 13 13 N 1.31415 * 120.00384 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00036 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47296 * 59.99652 * 14 12 10 16 16 H 1.48497 * 109.47079 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46844 * 299.99890 * 14 12 10 18 18 C 1.54069 * 108.79365 * 118.51463 * 2 1 3 19 19 C 1.54073 * 112.81490 * 79.00586 * 18 2 1 20 20 C 1.50470 * 112.50265 * 318.28121 * 19 18 2 21 21 C 1.54241 * 108.52691 * 94.14557 * 20 19 18 22 22 C 1.45539 * 112.40040 * 280.02485 * 21 20 19 23 23 C 1.50470 * 108.87738 * 241.43737 * 2 1 3 24 24 H 1.09006 * 109.46709 * 46.04292 * 1 2 3 25 25 H 1.08994 * 109.47501 * 166.03749 * 1 2 3 26 26 H 1.08991 * 109.47055 * 286.04448 * 1 2 3 27 27 H 1.08997 * 109.46930 * 60.00535 * 6 5 3 28 28 H 1.09000 * 109.47128 * 299.99714 * 6 5 3 29 29 H 0.96992 * 120.00653 * 0.02562 * 9 7 6 30 30 H 0.96995 * 120.00194 * 180.02562 * 13 12 10 31 31 H 1.08998 * 108.81382 * 199.86399 * 18 2 1 32 32 H 1.08997 * 108.81413 * 318.14670 * 18 2 1 33 33 H 1.09008 * 108.87178 * 197.50198 * 19 18 2 34 34 H 1.09002 * 108.87692 * 79.06432 * 19 18 2 35 35 H 1.08998 * 109.62302 * 334.43548 * 20 19 18 36 36 H 1.08997 * 109.62881 * 213.86320 * 20 19 18 37 37 H 1.09003 * 108.89594 * 159.27128 * 21 20 19 38 38 H 1.09001 * 108.89560 * 40.77922 * 21 20 19 39 39 H 1.08998 * 108.89726 * 301.17974 * 22 21 20 40 40 H 1.09003 * 108.89152 * 182.69581 * 22 21 20 41 41 H 1.09000 * 109.63170 * 93.18995 * 23 2 1 42 42 H 1.09004 * 109.63450 * 213.77521 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0171 1.4261 0.0000 4 8 2.6858 1.8361 -0.9190 5 8 1.7080 2.2409 1.0210 6 6 2.2106 3.6014 0.9539 7 6 1.7672 4.3615 2.1775 8 8 1.0936 3.8108 3.0225 9 7 2.1185 5.6535 2.3321 10 6 1.7147 6.3451 3.4449 11 1 1.1156 5.8545 4.1978 12 6 2.0773 7.6769 3.6046 13 7 2.8067 8.2738 2.6888 14 14 1.5278 8.6191 5.1211 15 1 2.0606 7.9539 6.3373 16 1 2.0423 10.0104 5.0529 17 1 0.0441 8.6417 5.1791 18 6 2.0264 -0.6963 1.2816 19 6 1.9624 -2.2329 1.1897 20 6 0.6981 -2.7186 0.5342 21 6 0.9739 -2.9261 -0.9691 22 6 0.9370 -1.6783 -1.7172 23 6 2.0168 -0.6807 -1.2505 24 1 -0.3633 0.7134 -0.7398 25 1 -0.3634 -0.9972 -0.2479 26 1 -0.3633 0.2840 0.9876 27 1 1.8198 4.0895 0.0612 28 1 3.2997 3.5848 0.9118 29 1 2.6563 6.0942 1.6558 30 1 3.0601 9.2033 2.8005 31 1 3.0582 -0.3979 1.4667 32 1 1.4121 -0.3684 2.1202 33 1 2.0205 -2.6490 2.1956 34 1 2.8171 -2.5876 0.6136 35 1 -0.0895 -1.9760 0.6629 36 1 0.3917 -3.6629 0.9842 37 1 0.2229 -3.6037 -1.3755 38 1 1.9576 -3.3802 -1.0880 39 1 -0.0442 -1.2205 -1.5920 40 1 1.0906 -1.8958 -2.7742 41 1 2.1894 0.0627 -2.0287 42 1 2.9428 -1.2157 -1.0395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781298812.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -117.551295 kcal Electronic energy + Delta-G solvation = -22950.459947 eV Core-core repulsion = 19509.976669 eV Total energy + Delta-G solvation = -3440.483278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17077 -39.26373 -38.02321 -36.06550 -33.99037 -33.39801 -32.56825 -31.36510 -28.52119 -28.10728 -25.17769 -24.99677 -24.23711 -21.57642 -20.31826 -19.55567 -18.68478 -18.05807 -17.30107 -16.80185 -16.24704 -15.75946 -15.58349 -14.95862 -14.61106 -14.41358 -14.23609 -13.90964 -13.65620 -13.21816 -12.96154 -12.83447 -12.50428 -12.39156 -12.11429 -12.00050 -11.61778 -11.51834 -11.29055 -11.10525 -10.82418 -10.71186 -10.48672 -10.47148 -10.44505 -10.35370 -10.30749 -10.25219 -9.72850 -9.58578 -8.50138 -8.07264 -6.49015 -3.91145 2.37185 2.77819 3.15957 3.23057 3.27928 3.75418 4.11298 4.37684 4.39775 4.54664 4.72850 4.83722 4.88927 4.98582 5.04164 5.13083 5.16029 5.16941 5.38611 5.46164 5.50714 5.56713 5.71180 5.72313 5.73517 5.81977 5.84239 5.92842 5.98258 6.04387 6.05594 6.08857 6.09534 6.16303 6.31308 6.35607 6.70952 7.48293 7.89010 7.99803 8.49906 9.07922 9.40580 9.90722 10.68231 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.040107 B = 0.003204 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.967437 B = 8736.364026 C = 9096.331548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.040 4.040 3 C 0.462 3.538 4 O -0.515 6.515 5 O -0.321 6.321 6 C 0.058 3.942 7 C 0.439 3.561 8 O -0.575 6.575 9 N -0.553 5.553 10 C -0.303 4.303 11 H 0.105 0.895 12 C 0.025 3.975 13 N -0.898 5.898 14 Si 0.934 3.066 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.272 1.272 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.143 4.143 21 C -0.118 4.118 22 C -0.137 4.137 23 C -0.108 4.108 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -19.184 -7.964 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.041 4.041 3 C 0.305 3.695 4 O -0.404 6.404 5 O -0.235 6.235 6 C -0.020 4.020 7 C 0.224 3.776 8 O -0.459 6.459 9 N -0.191 5.191 10 C -0.432 4.432 11 H 0.123 0.877 12 C -0.177 4.177 13 N -0.539 5.539 14 Si 0.761 3.239 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.145 4.145 19 C -0.150 4.150 20 C -0.180 4.180 21 C -0.155 4.155 22 C -0.174 4.174 23 C -0.146 4.146 24 H 0.077 0.923 25 H 0.123 0.877 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.291 -19.183 -7.650 20.779 hybrid contribution 0.416 1.089 0.152 1.176 sum -1.875 -18.094 -7.498 19.676 Atomic orbital electron populations 1.22792 0.92342 1.04105 1.03650 1.20200 0.98069 0.87575 0.98227 1.23888 0.76965 0.89023 0.79601 1.90614 1.36845 1.76695 1.36232 1.86567 1.69580 1.22764 1.44548 1.22745 0.99745 0.79693 0.99773 1.19325 0.86673 0.83465 0.88136 1.90554 1.42316 1.68518 1.44555 1.41701 1.47154 1.08315 1.21891 1.19680 1.31264 0.93162 0.99108 0.87675 1.25310 0.96577 0.96831 0.99020 1.69607 1.36545 1.13247 1.34452 0.85861 0.79107 0.78038 0.80897 1.19754 1.20871 1.19745 1.21985 1.02062 0.94950 0.95492 1.21281 0.98239 0.94518 1.00990 1.21827 0.99160 1.01833 0.95163 1.20504 1.01845 0.97696 0.95465 1.20800 1.00712 0.96133 0.99743 1.21417 0.98738 0.98586 0.95836 0.92283 0.87715 0.90927 0.89707 0.89719 0.77181 0.91582 0.91779 0.90138 0.91808 0.92072 0.89274 0.91990 0.92383 0.92278 0.89848 0.92073 0.89644 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 6.27 37.16 0.23 -1.64 16 2 C -0.04 -0.48 0.66 -156.37 -0.10 -0.59 16 3 C 0.46 7.58 6.33 36.00 0.23 7.81 16 4 O -0.51 -9.30 14.99 -18.75 -0.28 -9.58 16 5 O -0.32 -6.12 9.55 -45.91 -0.44 -6.56 16 6 C 0.06 1.14 5.94 36.01 0.21 1.36 16 7 C 0.44 10.75 7.86 -10.98 -0.09 10.66 16 8 O -0.58 -16.09 16.08 -14.11 -0.23 -16.32 16 9 N -0.55 -14.17 5.29 -10.96 -0.06 -14.22 16 10 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 11 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 13 N -0.90 -24.27 13.05 55.50 0.72 -23.54 16 14 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 C -0.11 -1.22 4.71 -25.61 -0.12 -1.34 16 19 C -0.11 -0.98 5.31 -27.43 -0.15 -1.13 16 20 C -0.14 -1.09 5.56 -27.35 -0.15 -1.24 16 21 C -0.12 -0.85 5.21 -29.60 -0.15 -1.01 16 22 C -0.14 -1.12 5.14 -29.60 -0.15 -1.27 16 23 C -0.11 -1.16 4.80 -27.35 -0.13 -1.29 16 24 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 25 H 0.11 0.88 2.67 -51.93 -0.14 0.74 16 26 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 27 H 0.08 1.53 8.13 -51.93 -0.42 1.11 16 28 H 0.08 1.53 8.13 -51.93 -0.42 1.11 16 29 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 31 H 0.06 0.77 7.97 -51.93 -0.41 0.36 16 32 H 0.08 0.99 7.72 -51.93 -0.40 0.59 16 33 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.06 0.51 6.63 -51.93 -0.34 0.17 16 35 H 0.09 0.70 4.25 -51.93 -0.22 0.48 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16 39 H 0.08 0.66 4.83 -51.93 -0.25 0.41 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 1.06 6.66 -51.93 -0.35 0.71 16 42 H 0.07 0.74 6.98 -51.93 -0.36 0.37 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -31.65 326.00 -7.06 -38.71 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.05 Total: 8.49 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.61 Total: 2.32 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.67 Total: -37.77 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.95 Total: -32.45 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.65 -7.06 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781298812.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.840 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds