Wall clock time and date at job start Tue Mar 31 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.01274 * 2 1 4 4 C 1.54261 * 110.03634 * 238.56050 * 2 1 3 5 5 C 1.54888 * 104.19229 * 264.32330 * 4 2 1 6 6 C 1.54893 * 102.75256 * 322.05635 * 5 4 2 7 7 H 1.08996 * 110.59624 * 279.21168 * 6 5 4 8 8 C 1.50700 * 110.48823 * 156.62116 * 6 5 4 9 9 O 1.20824 * 119.99444 * 245.22689 * 8 6 5 10 10 O 1.34228 * 119.99942 * 65.22784 * 8 6 5 11 11 C 1.45195 * 116.99467 * 179.97438 * 10 8 6 12 12 C 1.50709 * 109.46904 * 179.97438 * 11 10 8 13 13 O 1.21281 * 119.99753 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00069 * 180.02562 * 12 11 10 15 15 C 1.46493 * 119.99700 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.47128 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 C 1.53874 * 110.03153 * 121.38496 * 2 1 3 25 25 H 1.08991 * 109.47601 * 298.60907 * 1 2 3 26 26 H 1.09000 * 109.46945 * 58.61156 * 1 2 3 27 27 H 1.09001 * 109.46637 * 178.60765 * 1 2 3 28 28 H 1.09005 * 109.47323 * 181.38723 * 3 2 1 29 29 H 1.08999 * 109.47116 * 301.38574 * 3 2 1 30 30 H 1.09001 * 109.47443 * 61.38783 * 3 2 1 31 31 H 1.08996 * 110.48991 * 23.00027 * 4 2 1 32 32 H 1.08999 * 110.49163 * 145.51719 * 4 2 1 33 33 H 1.09005 * 110.75787 * 203.74314 * 5 4 2 34 34 H 1.09001 * 110.75898 * 80.36869 * 5 4 2 35 35 H 1.09000 * 109.47430 * 60.00243 * 11 10 8 36 36 H 1.08997 * 109.47916 * 299.99873 * 11 10 8 37 37 H 0.96998 * 120.00160 * 359.97438 * 14 12 11 38 38 H 1.09001 * 109.47786 * 60.00101 * 15 14 12 39 39 H 1.09006 * 109.47401 * 299.99686 * 15 14 12 40 40 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 41 41 H 1.08993 * 110.03243 * 0.02562 * 24 2 1 42 42 H 1.08997 * 110.07577 * 238.59197 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4377 0.0000 4 6 2.0585 -0.7559 -1.2365 5 6 2.3282 -2.1903 -0.7181 6 6 2.8875 -1.9402 0.7045 7 1 3.9443 -1.6770 0.6602 8 6 2.6839 -3.1552 1.5725 9 8 1.9480 -3.0976 2.5291 10 8 3.3199 -4.3012 1.2829 11 6 3.0768 -5.4304 2.1626 12 6 3.8690 -6.6198 1.6840 13 8 4.5698 -6.5248 0.6987 14 7 3.7987 -7.7889 2.3508 15 6 4.5692 -8.9448 1.8858 16 6 4.3169 -10.1170 2.7987 17 1 3.6496 -10.0113 3.6414 18 6 4.9378 -11.3242 2.5583 19 7 5.7508 -11.4528 1.5325 20 14 4.6255 -12.7769 3.6904 21 1 5.4055 -13.9490 3.2183 22 1 5.0440 -12.4270 5.0716 23 1 3.1783 -13.1097 3.6809 24 6 2.0571 -0.7529 1.2341 25 1 -0.3634 0.4920 0.9021 26 1 -0.3633 0.5353 -0.8773 27 1 -0.3632 -1.0274 -0.0250 28 1 3.1433 1.4275 -0.0249 29 1 1.6751 1.9622 -0.8773 30 1 1.7156 1.9475 0.9022 31 1 1.3063 -0.7705 -2.0251 32 1 2.9799 -0.2993 -1.5978 33 1 3.0678 -2.6936 -1.3409 34 1 1.4032 -2.7654 -0.6738 35 1 2.0146 -5.6750 2.1550 36 1 3.3832 -5.1737 3.1767 37 1 3.2385 -7.8648 3.1390 38 1 5.6315 -8.7006 1.8939 39 1 4.2631 -9.2013 0.8715 40 1 5.9132 -10.6984 0.9449 41 1 1.2229 -1.1186 1.8328 42 1 2.6865 -0.0949 1.8332 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781703253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:17 Heat of formation + Delta-G solvation = -156.088065 kcal Electronic energy + Delta-G solvation = -21947.813453 eV Core-core repulsion = 18505.659095 eV Total energy + Delta-G solvation = -3442.154358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92961 -39.27737 -38.56121 -36.37980 -34.50474 -32.88091 -32.54358 -29.55373 -29.01361 -27.64207 -26.44280 -25.21520 -22.92140 -22.38580 -20.34143 -20.05981 -19.03046 -17.94482 -17.74841 -16.71475 -16.53871 -15.96714 -15.55508 -14.97920 -14.73214 -14.39144 -14.06953 -13.81349 -13.69503 -13.37183 -13.25479 -12.99794 -12.64723 -12.39689 -12.33129 -12.00307 -11.89389 -11.84992 -11.49526 -11.09291 -11.08123 -10.90992 -10.88723 -10.82652 -10.79362 -10.73914 -10.46954 -10.18619 -9.36367 -8.85096 -8.76352 -8.13306 -6.56536 -4.30928 2.07568 2.37525 3.05150 3.35647 3.37252 3.56330 3.84966 4.07930 4.18495 4.39509 4.42594 4.72822 4.85197 4.86690 4.97331 5.07946 5.11323 5.15024 5.19843 5.20700 5.22776 5.23077 5.33025 5.44738 5.53428 5.61128 5.64829 5.71594 5.77634 5.89271 5.92512 6.02759 6.10588 6.31758 6.89150 7.13234 7.14655 7.54157 7.64421 8.19560 8.31833 8.63926 8.78318 9.42528 10.83614 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.050342 B = 0.002512 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.057535 B =11142.192164 C =11396.685035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.115 4.115 5 C -0.112 4.112 6 C -0.085 4.085 7 H 0.113 0.887 8 C 0.467 3.533 9 O -0.511 6.511 10 O -0.327 6.327 11 C 0.048 3.952 12 C 0.500 3.500 13 O -0.535 6.535 14 N -0.702 5.702 15 C 0.241 3.759 16 C -0.625 4.625 17 H 0.058 0.942 18 C 0.023 3.977 19 N -0.900 5.900 20 Si 1.077 2.923 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.286 1.286 24 C -0.107 4.107 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.395 0.605 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.273 0.727 41 H 0.087 0.913 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.434 23.850 -1.934 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.105 4.105 7 H 0.131 0.869 8 C 0.310 3.690 9 O -0.399 6.399 10 O -0.242 6.242 11 C -0.029 4.029 12 C 0.283 3.717 13 O -0.412 6.412 14 N -0.352 5.352 15 C 0.120 3.880 16 C -0.664 4.664 17 H 0.077 0.923 18 C -0.183 4.183 19 N -0.534 5.534 20 Si 0.904 3.096 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.145 4.145 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.229 0.771 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.729 22.282 -2.109 24.024 hybrid contribution -0.734 1.494 0.387 1.709 sum -9.463 23.776 -1.722 25.648 Atomic orbital electron populations 1.21915 0.94076 1.01955 1.01674 1.21190 0.95862 0.95360 0.94680 1.21924 1.00918 0.95075 1.01749 1.22509 1.01374 0.94374 0.96954 1.22481 1.01648 0.97725 0.93113 1.21912 1.03347 0.90040 0.95158 0.86866 1.23747 0.76739 0.84508 0.84026 1.90642 1.36028 1.84459 1.28797 1.86579 1.64762 1.19469 1.53353 1.22826 1.01508 0.84563 0.94034 1.19951 0.83100 0.83950 0.84676 1.90702 1.40669 1.83812 1.26053 1.46175 1.47845 1.10882 1.30319 1.19235 0.90941 0.81986 0.95790 1.22048 1.32689 0.97116 1.14502 0.92339 1.25903 0.93194 1.00582 0.98619 1.70767 1.33277 1.35066 1.14332 0.83433 0.76216 0.75239 0.74751 1.20519 1.21234 1.21241 1.22341 1.00176 0.94544 0.97430 0.92564 0.92616 0.92471 0.92438 0.92593 0.92606 0.90973 0.90910 0.89744 0.90884 0.88518 0.88492 0.77142 0.96262 0.96252 0.91677 0.89455 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.14 37.16 0.30 -0.67 16 2 C -0.07 -0.51 0.94 -153.39 -0.14 -0.65 16 3 C -0.14 -0.84 8.16 37.16 0.30 -0.53 16 4 C -0.11 -0.81 5.90 -25.08 -0.15 -0.96 16 5 C -0.11 -1.01 6.32 -24.74 -0.16 -1.17 16 6 C -0.09 -0.85 3.36 -90.11 -0.30 -1.16 16 7 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.47 6.33 7.25 36.01 0.26 6.59 16 9 O -0.51 -7.76 15.17 -18.75 -0.28 -8.05 16 10 O -0.33 -5.18 9.75 -45.90 -0.45 -5.63 16 11 C 0.05 0.75 5.94 36.01 0.21 0.96 16 12 C 0.50 10.08 7.91 -10.98 -0.09 9.99 16 13 O -0.53 -13.01 16.50 -14.10 -0.23 -13.24 16 14 N -0.70 -14.70 5.55 -61.47 -0.34 -15.04 16 15 C 0.24 6.30 4.74 -5.19 -0.02 6.28 16 16 C -0.63 -17.01 9.28 -34.44 -0.32 -17.33 16 17 H 0.06 1.50 7.60 -52.48 -0.40 1.10 16 18 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 19 N -0.90 -27.04 13.65 55.43 0.76 -26.28 16 20 Si 1.08 24.18 29.90 -169.99 -5.08 19.09 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 23 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 24 C -0.11 -0.94 5.49 -25.61 -0.14 -1.08 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 32 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 37 H 0.40 7.05 8.32 -40.82 -0.34 6.71 16 38 H 0.02 0.55 8.01 -51.93 -0.42 0.13 16 39 H 0.02 0.55 8.01 -51.93 -0.42 0.14 16 40 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 41 H 0.09 0.91 6.38 -51.93 -0.33 0.58 16 42 H 0.07 0.58 7.67 -51.93 -0.40 0.19 16 LS Contribution 349.07 15.07 5.26 5.26 Total: -1.00 -33.32 349.07 -7.56 -40.88 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.85 Total: 2.19 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.34 Total: 0.81 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.42 Total: -41.32 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.96 Total: -26.92 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.32 -7.56 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781703253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.205 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds