Wall clock time and date at job start Tue Mar 31 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 110.01526 * 2 1 4 4 C 1.53872 * 110.02974 * 238.55363 * 2 1 3 5 5 C 1.54465 * 106.68675 * 240.87186 * 4 2 1 6 6 C 1.54890 * 104.09937 * 23.34977 * 5 4 2 7 7 H 1.08996 * 110.75926 * 80.70407 * 6 5 4 8 8 C 1.50697 * 110.75521 * 203.89584 * 6 5 4 9 9 O 1.20829 * 120.00531 * 116.06190 * 8 6 5 10 10 O 1.34234 * 119.99751 * 296.05620 * 8 6 5 11 11 C 1.45194 * 117.00053 * 179.97438 * 10 8 6 12 12 C 1.50707 * 109.47248 * 180.02562 * 11 10 8 13 13 O 1.21281 * 119.99523 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99914 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99778 * 179.97438 * 14 12 11 16 16 C 1.50696 * 109.46871 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99717 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.54265 * 110.03106 * 121.38799 * 2 1 3 25 25 H 1.09000 * 109.47031 * 298.61159 * 1 2 3 26 26 H 1.08997 * 109.47200 * 58.60570 * 1 2 3 27 27 H 1.08996 * 109.47167 * 178.61126 * 1 2 3 28 28 H 1.09007 * 109.47016 * 181.39370 * 3 2 1 29 29 H 1.09006 * 109.47473 * 301.38813 * 3 2 1 30 30 H 1.08998 * 109.47240 * 61.39325 * 3 2 1 31 31 H 1.08997 * 110.03084 * 0.02562 * 4 2 1 32 32 H 1.09007 * 110.02794 * 121.38265 * 4 2 1 33 33 H 1.09000 * 110.40539 * 264.76088 * 5 4 2 34 34 H 1.09000 * 110.65406 * 142.05611 * 5 4 2 35 35 H 1.09005 * 109.46943 * 60.00509 * 11 10 8 36 36 H 1.09002 * 109.47645 * 300.00415 * 11 10 8 37 37 H 0.97000 * 120.00556 * 0.02562 * 14 12 11 38 38 H 1.09005 * 109.46943 * 60.00092 * 15 14 12 39 39 H 1.09002 * 109.47064 * 300.00355 * 15 14 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.48552 * 336.99809 * 24 2 1 42 42 H 1.08995 * 110.60243 * 214.40557 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0571 -0.7542 -1.2333 5 6 2.8857 -1.9455 -0.7041 6 6 2.3280 -2.1899 0.7201 7 1 1.4036 -2.7659 0.6795 8 6 3.3504 -2.8848 1.5820 9 8 3.8007 -2.3266 2.5544 10 8 3.7609 -4.1240 1.2694 11 6 4.7479 -4.7316 2.1439 12 6 5.0854 -6.1109 1.6387 13 8 4.5472 -6.5392 0.6398 14 7 5.9851 -6.8682 2.2970 15 6 6.3127 -8.2092 1.8063 16 6 7.3372 -8.8397 2.7138 17 1 7.7071 -8.2962 3.5706 18 6 7.8025 -10.1107 2.4501 19 7 8.6963 -10.6612 3.2424 20 14 7.1633 -11.0504 0.9677 21 1 5.9669 -11.8382 1.3591 22 1 6.7955 -10.0918 -0.1052 23 1 8.2195 -11.9683 0.4705 24 6 2.0585 -0.7549 1.2372 25 1 -0.3633 0.4921 0.9022 26 1 -0.3633 0.5353 -0.8772 27 1 -0.3633 -1.0273 -0.0249 28 1 3.1435 1.4273 -0.0250 29 1 1.6752 1.9622 -0.8773 30 1 1.7158 1.9474 0.9022 31 1 1.2229 -1.1198 -1.8320 32 1 2.6860 -0.0960 -1.8328 33 1 3.9428 -1.6836 -0.6602 34 1 2.7355 -2.8260 -1.3288 35 1 4.3438 -4.8030 3.1537 36 1 5.6493 -4.1188 2.1557 37 1 6.4152 -6.5257 3.0962 38 1 6.7171 -8.1378 0.7965 39 1 5.4112 -8.8219 1.7941 40 1 9.0233 -11.5554 3.0571 41 1 1.3061 -0.7686 2.0258 42 1 2.9807 -0.3002 1.5989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781703254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:20 Heat of formation + Delta-G solvation = -148.845696 kcal Electronic energy + Delta-G solvation = -21939.202256 eV Core-core repulsion = 18497.361951 eV Total energy + Delta-G solvation = -3441.840305 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.90104 -39.29148 -38.59314 -36.37495 -34.38300 -32.88052 -32.43663 -29.70524 -29.20759 -27.66244 -27.25866 -25.30730 -22.77773 -22.00640 -20.31596 -20.12391 -19.11362 -17.86836 -17.51940 -16.78180 -16.51808 -15.85772 -15.59583 -15.14445 -14.72310 -14.40944 -14.13433 -13.99271 -13.73474 -13.61969 -13.19849 -13.06556 -12.66125 -12.39924 -12.38483 -12.10375 -11.94493 -11.86350 -11.47887 -11.08655 -11.05965 -10.94668 -10.89228 -10.83489 -10.81329 -10.72752 -10.47595 -10.01151 -9.55438 -9.35044 -8.82862 -8.28040 -6.25200 -4.28284 2.07872 2.37068 3.02170 3.24543 3.31385 3.39207 3.83170 4.06525 4.16788 4.29994 4.38893 4.72208 4.85420 4.88401 4.93215 5.06841 5.09398 5.11372 5.15590 5.16887 5.20311 5.22760 5.31123 5.42534 5.52313 5.58769 5.64506 5.72076 5.75203 5.89072 5.92953 5.99867 6.08804 6.30983 6.72047 6.99681 7.08423 7.30633 7.63166 8.04013 8.40252 8.67053 8.78890 9.33828 10.86561 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.044456 B = 0.002651 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.688319 B =10560.611264 C =10917.181421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.086 4.086 7 H 0.114 0.886 8 C 0.467 3.533 9 O -0.510 6.510 10 O -0.328 6.328 11 C 0.048 3.952 12 C 0.502 3.498 13 O -0.537 6.537 14 N -0.700 5.700 15 C 0.222 3.778 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.260 1.260 23 H -0.283 1.283 24 C -0.099 4.099 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.399 0.601 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.688 22.491 -6.190 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.106 4.106 7 H 0.132 0.868 8 C 0.310 3.690 9 O -0.398 6.398 10 O -0.243 6.243 11 C -0.030 4.030 12 C 0.285 3.715 13 O -0.414 6.414 14 N -0.350 5.350 15 C 0.100 3.900 16 C -0.584 4.584 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.185 1.185 23 H -0.208 1.208 24 C -0.136 4.136 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.233 0.767 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.788 22.124 -6.586 27.415 hybrid contribution 0.143 -0.526 -0.011 0.545 sum -14.646 21.599 -6.598 26.917 Atomic orbital electron populations 1.21940 0.94077 1.01940 1.01769 1.21189 0.95742 0.95532 0.94685 1.21908 1.01022 0.94960 1.01735 1.22338 0.99639 0.96355 0.96971 1.22371 1.00030 0.99263 0.93293 1.22048 0.96765 0.96524 0.95216 0.86758 1.23721 0.81377 0.79674 0.84195 1.90660 1.55443 1.65833 1.27875 1.86573 1.54852 1.29965 1.52886 1.22820 0.92479 0.93585 0.94092 1.19936 0.80835 0.85906 0.84799 1.90697 1.52156 1.73202 1.25351 1.46072 1.41319 1.18035 1.29595 1.19554 0.96149 0.78269 0.95979 1.21067 1.23504 1.01357 1.12458 0.90129 1.24796 0.94291 0.97018 0.96503 1.69879 1.29437 1.15819 1.37622 0.86811 0.78989 0.80384 0.83479 1.19790 1.18461 1.20835 1.22462 1.02409 0.91724 0.97022 0.92578 0.92554 0.92390 0.92434 0.92574 0.92571 0.91121 0.91126 0.91017 0.89833 0.88369 0.88391 0.76710 0.95429 0.95885 0.92183 0.90738 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.14 37.16 0.30 -0.52 16 2 C -0.07 -0.48 0.94 -153.39 -0.14 -0.63 16 3 C -0.14 -0.86 8.16 37.16 0.30 -0.56 16 4 C -0.12 -0.79 6.12 -25.51 -0.16 -0.95 16 5 C -0.11 -0.97 6.28 -24.97 -0.16 -1.13 16 6 C -0.09 -0.83 3.39 -89.77 -0.30 -1.14 16 7 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 8 C 0.47 6.15 7.26 36.00 0.26 6.41 16 9 O -0.51 -7.61 15.50 -18.75 -0.29 -7.90 16 10 O -0.33 -5.00 9.75 -45.91 -0.45 -5.45 16 11 C 0.05 0.71 5.94 36.01 0.21 0.92 16 12 C 0.50 9.60 7.91 -10.98 -0.09 9.51 16 13 O -0.54 -12.37 16.50 -14.10 -0.23 -12.60 16 14 N -0.70 -13.91 5.55 -61.47 -0.34 -14.25 16 15 C 0.22 5.38 4.50 -5.19 -0.02 5.36 16 16 C -0.55 -14.78 9.83 -34.44 -0.34 -15.12 16 17 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 18 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 20 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.10 -0.84 4.96 -25.07 -0.12 -0.96 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.44 7.67 -51.93 -0.40 0.04 16 32 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 33 H 0.07 0.66 8.04 -51.93 -0.42 0.25 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.40 6.85 8.32 -40.82 -0.34 6.51 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 42 H 0.08 0.81 7.19 -51.93 -0.37 0.43 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -32.75 347.45 -7.23 -39.98 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.91 Total: 0.62 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.35 Total: 3.29 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.43 Total: -39.70 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.97 Total: -25.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.75 -7.23 -39.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781703254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.862 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds