Wall clock time and date at job start Tue Mar 31 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86793 * 120.00165 * 2 1 4 4 H 1.48502 * 109.46842 * 269.99607 * 3 2 1 5 5 H 1.48498 * 109.47197 * 29.99113 * 3 2 1 6 6 H 1.48502 * 109.47285 * 149.99786 * 3 2 1 7 7 C 1.38757 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99724 * 0.02562 * 7 2 1 9 9 O 1.34915 * 120.00368 * 179.97438 * 7 2 1 10 10 C 1.34310 * 117.00241 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00080 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99701 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.46925 * 180.02562 * 12 10 9 14 14 N 1.46894 * 110.01948 * 179.31270 * 13 12 10 15 15 C 1.47015 * 111.00420 * 64.32815 * 14 13 12 16 16 C 1.53091 * 109.26094 * 177.60858 * 15 14 13 17 17 O 1.43021 * 109.25561 * 56.85229 * 16 15 14 18 18 C 1.43016 * 113.73936 * 301.32868 * 17 16 15 19 19 C 1.47024 * 110.99588 * 300.69881 * 14 13 12 20 20 C 1.54266 * 110.03135 * 57.86271 * 13 12 10 21 21 C 1.54890 * 104.19612 * 217.10589 * 20 13 12 22 22 C 1.54894 * 102.74996 * 37.94561 * 21 20 13 23 23 C 1.53878 * 110.03004 * 300.69957 * 13 12 10 24 24 H 0.96996 * 119.99942 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47318 * 299.99508 * 12 10 9 26 26 H 1.09000 * 109.47161 * 60.00139 * 12 10 9 27 27 H 1.08995 * 109.50929 * 297.55194 * 15 14 13 28 28 H 1.09001 * 109.50012 * 57.67520 * 15 14 13 29 29 H 1.09002 * 109.51085 * 296.92209 * 16 15 14 30 30 H 1.08996 * 109.50907 * 176.78404 * 16 15 14 31 31 H 1.08994 * 109.50760 * 298.73585 * 18 17 16 32 32 H 1.08996 * 109.50475 * 178.60440 * 18 17 16 33 33 H 1.09000 * 109.50713 * 302.32559 * 19 14 13 34 34 H 1.09003 * 109.50362 * 62.41331 * 19 14 13 35 35 H 1.08994 * 110.48825 * 335.78775 * 20 13 12 36 36 H 1.09002 * 110.48043 * 98.43119 * 20 13 12 37 37 H 1.09006 * 110.75972 * 279.63018 * 21 20 13 38 38 H 1.09004 * 110.75822 * 156.26369 * 21 20 13 39 39 H 1.08996 * 110.48544 * 203.37690 * 22 21 20 40 40 H 1.08994 * 110.59351 * 80.78937 * 22 21 20 41 41 H 1.08999 * 110.03363 * 238.56693 * 23 13 12 42 42 H 1.09008 * 110.03503 * 0.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0462 -1.4001 5 1 1.4458 2.6527 0.6998 6 1 3.5459 1.4401 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4681 -2.1370 0.0005 9 8 3.3573 -1.2018 0.0000 10 6 3.9670 -2.3985 0.0000 11 8 3.3069 -3.4151 0.0001 12 6 5.4720 -2.4773 0.0001 13 6 5.9058 -3.9446 -0.0005 14 7 7.3719 -4.0355 -0.0171 15 6 7.9487 -3.4710 1.2117 16 6 9.4700 -3.6399 1.1793 17 8 9.9888 -3.0162 0.0015 18 6 9.4489 -3.5421 -1.2140 19 6 7.9274 -3.3722 -1.2058 20 6 5.3164 -4.6694 -1.2281 21 6 4.9638 -6.0828 -0.7017 22 6 4.4382 -5.7943 0.7265 23 6 5.3474 -4.6598 1.2422 24 1 -0.4850 0.8400 -0.0004 25 1 5.8618 -1.9833 -0.8900 26 1 5.8617 -1.9832 0.8901 27 1 7.7014 -2.4115 1.2766 28 1 7.5428 -3.9938 2.0777 29 1 9.7183 -4.7012 1.1685 30 1 9.9070 -3.1721 2.0614 31 1 9.6965 -4.6005 -1.2943 32 1 9.8707 -3.0036 -2.0626 33 1 7.5061 -3.8229 -2.1044 34 1 7.6791 -2.3112 -1.1799 35 1 4.4198 -4.1583 -1.5788 36 1 6.0569 -4.7330 -2.0254 37 1 5.8515 -6.7144 -0.6664 38 1 4.1869 -6.5405 -1.3142 39 1 4.5377 -6.6789 1.3555 40 1 3.3995 -5.4656 0.6936 41 1 6.1642 -5.0751 1.8325 42 1 4.7670 -3.9617 1.8456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786098022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:13 Heat of formation + Delta-G solvation = -111.375589 kcal Electronic energy + Delta-G solvation = -24126.325256 eV Core-core repulsion = 20686.109776 eV Total energy + Delta-G solvation = -3440.215480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69485 -39.10160 -37.78450 -35.22022 -34.32732 -32.30637 -31.50475 -30.65338 -28.44397 -27.35202 -25.48224 -24.48602 -24.01123 -20.90588 -20.48702 -20.15874 -18.44006 -17.93513 -17.07741 -16.31463 -16.21683 -15.36764 -15.26326 -15.07883 -15.03176 -14.75151 -14.35343 -14.04826 -13.58816 -13.33336 -12.97363 -12.91625 -12.39774 -12.22461 -11.92903 -11.74381 -11.43312 -11.14511 -11.08397 -10.86221 -10.75899 -10.56852 -10.49734 -10.49135 -10.37835 -10.11795 -9.97890 -9.73234 -9.70140 -8.98727 -8.67704 -8.34196 -6.37260 -4.12400 3.12966 3.22564 3.34185 3.40775 3.61407 3.76983 4.19299 4.25573 4.63765 4.81568 4.86564 4.95122 5.02822 5.06956 5.11007 5.14746 5.19065 5.39862 5.47734 5.54860 5.58309 5.64698 5.67896 5.73324 5.84708 5.88596 5.97117 6.09470 6.13490 6.30467 6.32235 6.39354 6.44488 6.46205 6.55569 6.92632 6.94971 7.04871 7.14711 7.76767 8.03816 8.64928 9.02267 9.71135 10.71455 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019284 B = 0.005393 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.596442 B = 5190.481212 C = 6096.438899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.379 4.379 8 H 0.110 0.890 9 O -0.257 6.257 10 C 0.413 3.587 11 O -0.523 6.523 12 C -0.135 4.135 13 C 0.127 3.873 14 N -0.516 5.516 15 C 0.006 3.994 16 C 0.066 3.934 17 O -0.388 6.388 18 C 0.066 3.934 19 C 0.005 3.995 20 C -0.110 4.110 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.100 4.100 24 H 0.279 0.721 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.741 -7.815 -0.034 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.455 4.455 8 H 0.127 0.873 9 O -0.166 6.166 10 C 0.258 3.742 11 O -0.417 6.417 12 C -0.175 4.175 13 C 0.037 3.963 14 N -0.241 5.241 15 C -0.122 4.122 16 C -0.011 4.011 17 O -0.306 6.306 18 C -0.011 4.011 19 C -0.123 4.123 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.138 4.138 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.651 -8.292 -0.041 19.501 hybrid contribution -0.274 1.610 0.039 1.634 sum 17.376 -6.682 -0.002 18.617 Atomic orbital electron populations 1.69603 1.05661 1.28297 1.48019 1.24531 0.94978 0.98578 0.95720 0.86254 0.80260 0.81766 0.78864 1.19946 1.20768 1.18601 1.20625 0.76228 0.96864 1.51768 0.87268 1.83530 1.23936 1.31747 1.77371 1.22687 0.90200 0.82666 0.78682 1.90569 1.66904 1.35527 1.48707 1.21896 0.91844 0.99593 1.04135 1.21520 0.85128 0.91698 0.97931 1.62622 1.05109 1.54680 1.01648 1.22907 0.95704 0.99159 0.94409 1.22650 0.92285 0.98046 0.88118 1.87973 1.66160 1.62275 1.14237 1.22648 0.92061 0.99203 0.87177 1.22939 0.95859 0.98336 0.95137 1.22574 1.00530 0.96394 0.95279 1.22260 0.99517 0.96138 0.96633 1.22257 1.01179 0.96248 0.95283 1.22164 0.98076 0.97940 0.95630 0.91112 0.89246 0.89332 0.93480 0.89073 0.92419 0.88669 0.92417 0.88661 0.89054 0.93363 0.89447 0.92282 0.92298 0.92333 0.93259 0.89600 0.91923 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.96 55.48 0.77 -25.19 16 2 C 0.07 1.87 5.49 -17.53 -0.10 1.77 16 3 Si 0.90 21.59 28.62 -169.99 -4.86 16.73 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.38 -11.14 10.10 30.92 0.31 -10.83 16 8 H 0.11 3.51 7.09 -52.49 -0.37 3.14 16 9 O -0.26 -6.72 8.58 -20.69 -0.18 -6.90 16 10 C 0.41 9.26 6.67 36.01 0.24 9.50 16 11 O -0.52 -12.45 9.85 -19.05 -0.19 -12.63 16 12 C -0.13 -2.28 4.13 -27.88 -0.12 -2.39 16 13 C 0.13 1.86 0.33 -130.48 -0.04 1.82 16 14 N -0.52 -6.40 4.52 -217.37 -0.98 -7.39 16 15 C 0.01 0.07 4.97 -3.71 -0.02 0.05 16 16 C 0.07 0.66 7.01 37.20 0.26 0.92 16 17 O -0.39 -4.57 10.83 -35.23 -0.38 -4.95 16 18 C 0.07 0.66 7.01 37.21 0.26 0.92 16 19 C 0.01 0.06 4.95 -3.71 -0.02 0.04 16 20 C -0.11 -1.68 5.30 -25.07 -0.13 -1.81 16 21 C -0.11 -1.55 6.91 -24.74 -0.17 -1.72 16 22 C -0.11 -1.74 6.24 -25.07 -0.16 -1.89 16 23 C -0.10 -1.52 4.77 -25.61 -0.12 -1.64 16 24 H 0.28 7.56 8.31 -40.82 -0.34 7.23 16 25 H 0.09 1.41 6.46 -51.93 -0.34 1.08 16 26 H 0.09 1.41 6.65 -51.93 -0.35 1.07 16 27 H 0.05 0.58 6.60 -51.93 -0.34 0.24 16 28 H 0.09 0.98 6.08 -51.93 -0.32 0.66 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.98 6.01 -51.93 -0.31 0.67 16 34 H 0.05 0.59 6.46 -51.93 -0.34 0.26 16 35 H 0.09 1.60 5.76 -51.93 -0.30 1.30 16 36 H 0.06 0.79 5.84 -51.93 -0.30 0.48 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.60 6.49 -51.93 -0.34 1.26 16 41 H 0.06 0.83 6.17 -51.93 -0.32 0.51 16 42 H 0.06 1.11 6.86 -51.92 -0.36 0.76 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -31.15 313.33 -6.97 -38.11 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.07 Total: 2.75 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 0.20 Total: -5.25 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: -0.21 Total: -32.58 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.75 Total: -24.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.86 Total: 16.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.15 -6.97 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786098022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.265 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds