Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00281 * 2 1 4 4 H 1.48501 * 109.47668 * 240.00020 * 3 2 1 5 5 H 1.48505 * 109.46957 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47164 * 119.99639 * 3 2 1 7 7 C 1.37882 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99658 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47240 * 180.02562 * 10 9 7 12 12 O 1.45196 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.34221 * 117.00334 * 179.97438 * 12 11 10 14 14 O 1.20828 * 119.99772 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00583 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.46818 * 300.00296 * 15 13 12 17 17 C 1.53008 * 109.46793 * 59.99689 * 15 13 12 18 18 C 1.52993 * 109.46733 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47473 * 300.00094 * 18 17 15 20 20 C 1.53000 * 109.47328 * 60.00001 * 19 18 17 21 21 H 1.09002 * 109.47398 * 180.02562 * 20 19 18 22 22 C 1.50703 * 109.46912 * 60.00217 * 20 19 18 23 23 N 1.34777 * 119.99991 * 60.00288 * 22 20 19 24 24 O 1.21278 * 119.99818 * 240.00149 * 22 20 19 25 25 C 1.52996 * 109.47218 * 179.97438 * 15 13 12 26 26 H 0.97002 * 119.99852 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47164 * 60.00111 * 9 7 2 28 28 H 1.09003 * 109.47184 * 299.99590 * 9 7 2 29 29 H 1.09002 * 109.47638 * 59.99941 * 10 9 7 30 30 H 1.09008 * 109.47310 * 299.99887 * 10 9 7 31 31 H 1.08997 * 109.47005 * 59.99914 * 11 10 9 32 32 H 1.09004 * 109.46340 * 300.00105 * 11 10 9 33 33 H 1.09002 * 109.47021 * 300.00618 * 17 15 13 34 34 H 1.09004 * 109.46943 * 60.00684 * 17 15 13 35 35 H 1.09000 * 109.47250 * 60.00079 * 18 17 15 36 36 H 1.09004 * 109.46862 * 180.02562 * 18 17 15 37 37 H 1.09004 * 109.47368 * 300.00213 * 19 18 17 38 38 H 1.09001 * 109.47372 * 180.02562 * 19 18 17 39 39 H 0.96998 * 120.00094 * 359.97438 * 23 22 20 40 40 H 0.97004 * 119.99532 * 180.02562 * 23 22 20 41 41 H 1.08996 * 109.47452 * 59.99794 * 25 15 13 42 42 H 1.09000 * 109.47054 * 299.99954 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4801 -4.9872 -0.0033 12 8 2.4236 -6.0908 -0.0024 13 6 1.9106 -7.3311 -0.0033 14 8 0.7128 -7.4894 -0.0043 15 6 2.8286 -8.5263 -0.0031 16 1 3.4581 -8.5011 -0.8926 17 6 3.7104 -8.4919 1.2469 18 6 4.6427 -9.7049 1.2468 19 6 3.8098 -10.9883 1.2454 20 6 2.9281 -11.0228 -0.0045 21 1 2.3344 -11.9370 -0.0053 22 6 3.7983 -10.9874 -1.2343 23 7 4.7036 -11.9629 -1.4476 24 8 3.6840 -10.0812 -2.0322 25 6 1.9952 -9.8094 -0.0036 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8881 29 1 2.8712 -3.6048 0.8890 30 1 2.8725 -3.6040 -0.8910 31 1 0.8545 -5.0443 -0.8940 32 1 0.8525 -5.0455 0.8860 33 1 4.3040 -7.5777 1.2476 34 1 3.0808 -8.5171 2.1364 35 1 5.2721 -9.6793 0.3572 36 1 5.2706 -9.6806 2.1375 37 1 3.1803 -11.0140 2.1349 38 1 4.4741 -11.8526 1.2457 39 1 4.7953 -12.6875 -0.8093 40 1 5.2640 -11.9398 -2.2390 41 1 1.3667 -9.8342 -0.8937 42 1 1.3661 -9.8344 0.8862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786944979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -165.581176 kcal Electronic energy + Delta-G solvation = -22340.979916 eV Core-core repulsion = 18898.413906 eV Total energy + Delta-G solvation = -3442.566010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06744 -39.83052 -37.35512 -36.20019 -34.21230 -33.91616 -31.84156 -31.29316 -31.12766 -27.08353 -24.52990 -24.13211 -22.83734 -21.89998 -20.44975 -20.16339 -19.68479 -17.69396 -17.12487 -16.85306 -16.57789 -16.24232 -16.03759 -15.10909 -15.05439 -14.46277 -14.43491 -14.26536 -13.72777 -13.42296 -12.84326 -12.71879 -12.47839 -12.36545 -12.12926 -11.94288 -11.78713 -11.44423 -11.21903 -10.91106 -10.90493 -10.63742 -10.58071 -10.45092 -10.27562 -10.10972 -10.07288 -9.81766 -9.63932 -9.41635 -9.12655 -8.34655 -5.99593 -4.02484 2.29979 2.52845 3.03468 3.15613 3.35223 3.39172 3.42110 4.26862 4.32992 4.34775 4.47119 4.65779 4.82732 4.87546 5.00894 5.05337 5.16976 5.23107 5.36137 5.48067 5.57055 5.62965 5.67126 5.69853 5.74273 5.83389 5.90627 6.06949 6.11647 6.13682 6.42970 6.61698 6.63205 6.94288 6.95705 7.06823 7.65050 7.76948 7.92995 7.98967 8.10815 8.40721 9.03639 9.61414 11.11918 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036036 B = 0.002707 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.815498 B =10340.258011 C =10460.735444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.067 3.933 12 O -0.357 6.357 13 C 0.464 3.536 14 O -0.517 6.517 15 C -0.092 4.092 16 H 0.132 0.868 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.113 4.113 20 C -0.109 4.109 21 H 0.104 0.896 22 C 0.521 3.479 23 N -0.857 5.857 24 O -0.533 6.533 25 C -0.084 4.084 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.401 0.599 41 H 0.079 0.921 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.210 -28.658 2.533 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.006 4.006 12 O -0.273 6.273 13 C 0.307 3.693 14 O -0.406 6.406 15 C -0.111 4.111 16 H 0.149 0.851 17 C -0.151 4.151 18 C -0.158 4.158 19 C -0.151 4.151 20 C -0.131 4.131 21 H 0.122 0.878 22 C 0.306 3.694 23 N -0.421 5.421 24 O -0.409 6.409 25 C -0.122 4.122 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.228 0.772 40 H 0.231 0.769 41 H 0.098 0.902 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.460 -27.863 2.133 29.502 hybrid contribution 0.491 0.581 -0.076 0.765 sum 9.951 -27.282 2.056 29.113 Atomic orbital electron populations 1.69960 1.06087 1.26827 1.50559 1.25032 0.94880 0.99339 0.95238 0.86604 0.79524 0.82899 0.78656 1.20177 1.21275 1.20195 1.21151 0.93090 0.90726 1.50984 0.92485 1.19047 0.93855 0.90760 0.97643 1.21752 0.99882 0.91087 1.01890 1.23466 0.91289 0.83824 1.01994 1.86492 1.42552 1.15234 1.83064 1.23620 0.88495 0.85032 0.72174 1.90627 1.17152 1.86937 1.45868 1.21335 0.96941 0.89863 1.02953 0.85068 1.21542 0.97786 0.99361 0.96363 1.21578 0.97781 0.93857 1.02618 1.21601 0.98252 0.98399 0.96799 1.21428 0.97038 1.01344 0.93251 0.87833 1.20687 0.80163 0.81241 0.87292 1.43917 1.41204 1.28163 1.28798 1.90721 1.68578 1.34531 1.47093 1.21222 0.96321 0.90473 1.04156 0.92861 0.96244 0.96274 0.92218 0.92185 0.91645 0.91680 0.90086 0.91299 0.91719 0.90855 0.90190 0.91334 0.77166 0.76867 0.90243 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.11 -2.38 5.53 -26.73 -0.15 -2.53 16 11 C 0.07 1.34 5.47 37.16 0.20 1.55 16 12 O -0.36 -6.57 10.12 -39.23 -0.40 -6.97 16 13 C 0.46 7.85 7.26 36.01 0.26 8.11 16 14 O -0.52 -9.97 15.73 -18.75 -0.29 -10.27 16 15 C -0.09 -1.17 2.33 -91.77 -0.21 -1.38 16 16 H 0.13 1.84 5.51 -51.93 -0.29 1.55 16 17 C -0.11 -1.14 5.13 -26.73 -0.14 -1.27 16 18 C -0.12 -0.85 5.70 -26.74 -0.15 -1.01 16 19 C -0.11 -0.58 5.35 -26.73 -0.14 -0.72 16 20 C -0.11 -0.75 3.01 -91.74 -0.28 -1.03 16 21 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 22 C 0.52 4.41 5.91 -10.98 -0.06 4.35 16 23 N -0.86 -3.78 8.77 31.22 0.27 -3.51 16 24 O -0.53 -7.07 14.50 5.56 0.08 -6.99 16 25 C -0.08 -0.89 3.67 -26.71 -0.10 -0.99 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 31 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 32 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 33 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.51 7.22 -51.93 -0.37 0.13 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.19 7.57 -51.93 -0.39 -0.21 16 39 H 0.40 0.52 8.25 -40.82 -0.34 0.18 16 40 H 0.40 1.58 8.93 -40.82 -0.36 1.22 16 41 H 0.08 0.98 8.06 -51.93 -0.42 0.57 16 42 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 341.37 15.07 5.14 5.14 Total: -1.00 -35.34 341.37 -7.58 -42.92 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.78 Total: -2.37 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.32 Total: -8.25 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 1.01 Total: -30.17 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.61 Total: -24.23 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.34 -7.58 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786944979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.660 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds