Wall clock time and date at job start Tue Mar 31 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.46810 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99882 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00057 * 179.97438 * 13 12 11 16 16 H 1.09006 * 109.46749 * 60.00099 * 15 13 12 17 17 C 1.52995 * 109.47159 * 300.00174 * 15 13 12 18 18 C 1.52994 * 109.46952 * 179.97438 * 17 15 13 19 19 C 1.52997 * 109.47417 * 60.00075 * 18 17 15 20 20 C 1.53004 * 109.46888 * 299.99701 * 19 18 17 21 21 H 1.08998 * 109.47138 * 300.00232 * 20 19 18 22 22 C 1.50706 * 109.47002 * 179.97438 * 20 19 18 23 23 N 1.34778 * 119.99378 * 60.00679 * 22 20 19 24 24 O 1.21278 * 119.99954 * 239.99651 * 22 20 19 25 25 C 1.52997 * 109.46946 * 179.97438 * 15 13 12 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 32 32 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 33 33 H 1.09006 * 109.47229 * 299.99632 * 17 15 13 34 34 H 1.09003 * 109.47525 * 59.99820 * 17 15 13 35 35 H 1.09003 * 109.47448 * 299.99415 * 18 17 15 36 36 H 1.09009 * 109.47350 * 179.97438 * 18 17 15 37 37 H 1.09006 * 109.47362 * 180.02562 * 19 18 17 38 38 H 1.08998 * 109.47420 * 59.99760 * 19 18 17 39 39 H 0.96993 * 120.00154 * 359.97438 * 23 22 20 40 40 H 0.97005 * 119.99104 * 179.97438 * 23 22 20 41 41 H 1.08997 * 109.47263 * 300.00165 * 25 15 13 42 42 H 1.09006 * 109.47140 * 60.00553 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 8 2.4240 -6.0907 0.0018 13 6 1.9109 -7.3311 0.0019 14 8 0.7131 -7.4894 0.0019 15 6 2.8290 -8.5262 0.0019 16 1 3.4578 -8.5012 0.8919 17 6 3.7116 -8.4913 -1.2473 18 6 4.6440 -9.7043 -1.2469 19 6 3.8112 -10.9878 -1.2465 20 6 2.9286 -11.0227 0.0028 21 1 3.5574 -10.9972 0.8927 22 6 2.1078 -12.2866 0.0029 23 7 2.7199 -13.4874 0.0030 24 8 0.8967 -12.2232 0.0029 25 6 1.9957 -9.8093 0.0026 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0451 -0.8886 33 1 3.0828 -8.5163 -2.1373 34 1 4.3053 -7.5772 -1.2474 35 1 5.2729 -9.6790 -0.3569 36 1 5.2726 -9.6798 -2.1371 37 1 4.4756 -11.8520 -1.2458 38 1 3.1824 -11.0132 -2.1365 39 1 3.6885 -13.5381 0.0027 40 1 2.1916 -14.3010 0.0034 41 1 1.3672 -9.8339 0.8928 42 1 1.3665 -9.8345 -0.8872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786944983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:09 Heat of formation + Delta-G solvation = -174.914677 kcal Electronic energy + Delta-G solvation = -21960.500042 eV Core-core repulsion = 18517.529301 eV Total energy + Delta-G solvation = -3442.970741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88015 -39.94942 -37.80479 -36.39063 -34.28895 -34.13560 -31.96874 -31.34319 -31.24548 -26.83816 -24.55039 -24.20114 -22.85131 -21.50790 -20.66819 -20.40306 -19.95234 -18.10561 -17.27922 -17.05045 -16.66176 -16.34278 -16.03709 -15.49693 -15.06260 -14.65884 -14.18821 -13.91731 -13.74004 -13.68633 -13.20514 -12.93205 -12.81177 -12.59722 -12.19436 -11.78460 -11.59056 -11.55020 -11.15030 -11.08861 -10.89258 -10.87024 -10.74688 -10.44004 -10.27110 -10.14081 -10.11253 -10.07156 -9.83243 -9.81639 -8.60310 -8.34642 -6.37974 -4.07785 2.27890 2.32754 2.76799 3.17494 3.43891 3.45998 3.64882 4.17699 4.26014 4.29050 4.53862 4.60149 4.69723 4.81499 4.88243 4.92443 5.02010 5.14553 5.22841 5.38956 5.49858 5.52967 5.56137 5.56483 5.59142 5.77827 5.80969 5.92593 5.95500 6.08592 6.37139 6.42146 6.42599 6.74835 6.86686 6.90682 7.33214 7.44791 7.88890 7.92565 8.17197 8.43687 8.85646 9.64675 11.02721 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.044114 B = 0.002506 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.564960 B =11169.330445 C =11661.067955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.071 2.929 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.602 4.602 8 H 0.051 0.949 9 C 0.010 3.990 10 C -0.101 4.101 11 C 0.067 3.933 12 O -0.357 6.357 13 C 0.459 3.541 14 O -0.508 6.508 15 C -0.079 4.079 16 H 0.108 0.892 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.107 4.107 21 H 0.102 0.898 22 C 0.520 3.480 23 N -0.858 5.858 24 O -0.535 6.535 25 C -0.086 4.086 26 H 0.269 0.731 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.400 0.600 41 H 0.080 0.920 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.680 -27.270 -1.175 30.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.899 3.101 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.641 4.641 8 H 0.069 0.931 9 C -0.027 4.027 10 C -0.139 4.139 11 C -0.006 4.006 12 O -0.273 6.273 13 C 0.301 3.699 14 O -0.395 6.395 15 C -0.098 4.098 16 H 0.126 0.874 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.128 4.128 21 H 0.120 0.880 22 C 0.305 3.695 23 N -0.422 5.422 24 O -0.411 6.411 25 C -0.124 4.124 26 H 0.079 0.921 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.229 0.771 40 H 0.231 0.769 41 H 0.099 0.901 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.326 -25.374 -1.177 27.812 hybrid contribution 0.288 -2.088 0.081 2.109 sum 11.614 -27.462 -1.095 29.837 Atomic orbital electron populations 1.70785 1.06895 1.30652 1.46425 1.25902 0.96558 1.02836 0.93715 0.83514 0.74851 0.75187 0.76535 1.20748 1.21390 1.21396 1.21985 0.94361 0.91676 1.56038 0.93084 1.19184 0.94515 0.92587 0.96390 1.21602 0.99581 0.90551 1.02142 1.23479 0.91283 0.83811 1.02038 1.86487 1.42490 1.15167 1.83163 1.23552 0.88577 0.85008 0.72741 1.90680 1.17018 1.86816 1.45025 1.21048 0.96392 0.90350 1.01982 0.87366 1.21575 0.97791 0.99647 0.96286 1.21522 0.97492 0.93241 1.02962 1.21597 0.97912 0.98709 0.96874 1.21357 0.97600 0.92789 1.01091 0.88020 1.20644 0.88495 0.85513 0.74845 1.43901 1.11422 1.08293 1.78548 1.90792 1.14461 1.87340 1.48496 1.21241 0.96307 0.89433 1.05382 0.92073 0.97151 0.97159 0.91990 0.92005 0.91639 0.91633 0.91110 0.89831 0.91145 0.90746 0.91241 0.91007 0.77103 0.76897 0.90111 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.65 55.43 0.76 -27.57 16 2 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 3 Si 1.07 25.41 29.90 -169.99 -5.08 20.32 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.60 -17.34 9.11 -34.44 -0.31 -17.66 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 10 C -0.10 -2.14 5.53 -26.73 -0.15 -2.29 16 11 C 0.07 1.27 5.47 37.16 0.20 1.47 16 12 O -0.36 -5.96 10.12 -39.26 -0.40 -6.36 16 13 C 0.46 7.03 7.26 36.01 0.26 7.29 16 14 O -0.51 -9.47 15.73 -18.75 -0.29 -9.76 16 15 C -0.08 -0.81 2.63 -91.77 -0.24 -1.05 16 16 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.12 -0.97 5.14 -26.74 -0.14 -1.11 16 18 C -0.11 -0.61 5.92 -26.74 -0.16 -0.77 16 19 C -0.11 -0.58 5.10 -26.73 -0.14 -0.72 16 20 C -0.11 -0.74 2.53 -91.74 -0.23 -0.97 16 21 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 22 C 0.52 4.55 7.43 -10.98 -0.08 4.46 16 23 N -0.86 -3.81 8.77 31.22 0.27 -3.53 16 24 O -0.54 -7.49 16.82 5.56 0.09 -7.40 16 25 C -0.09 -0.91 3.07 -26.70 -0.08 -0.99 16 26 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 27 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 28 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 37 H 0.07 0.19 7.56 -51.93 -0.39 -0.20 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.40 0.51 8.25 -40.82 -0.34 0.17 16 40 H 0.40 1.55 8.93 -40.82 -0.36 1.19 16 41 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 42 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -36.35 346.58 -7.62 -43.97 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.91 Total: -3.01 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.28 Total: -11.88 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 1.03 Total: -31.10 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.60 Total: -23.52 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.35 -7.62 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786944983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.948 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds