Wall clock time and date at job start Tue Mar 31 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99619 * 90.00051 * 10 9 7 12 12 C 1.53007 * 109.47224 * 90.00069 * 11 10 9 13 13 C 1.52997 * 117.49816 * 243.74297 * 12 11 10 14 14 C 1.52996 * 117.49988 * 175.08139 * 12 11 10 15 15 C 1.34774 * 120.00261 * 270.00227 * 10 9 7 16 16 O 1.21291 * 119.99579 * 0.02562 * 15 10 9 17 17 C 1.50697 * 120.00055 * 180.02562 * 15 10 9 18 18 C 1.53001 * 109.46754 * 179.97438 * 17 15 10 19 19 O 1.42968 * 109.47186 * 294.99672 * 18 17 15 20 20 C 1.43090 * 113.76863 * 181.20830 * 19 18 17 21 21 C 1.53264 * 108.94219 * 57.96850 * 20 19 18 22 22 C 1.53252 * 108.84827 * 305.47657 * 21 20 19 23 23 O 1.42972 * 109.46613 * 174.99800 * 18 17 15 24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 1.09006 * 109.47349 * 209.99918 * 11 10 9 28 28 H 1.09003 * 109.47665 * 330.00083 * 11 10 9 29 29 H 1.08998 * 115.54693 * 29.41195 * 12 11 10 30 30 H 1.08998 * 117.49974 * 359.97438 * 13 12 11 31 31 H 1.09001 * 117.49461 * 145.01818 * 13 12 11 32 32 H 1.08998 * 117.50121 * 214.97850 * 14 12 11 33 33 H 1.09004 * 117.49797 * 0.02562 * 14 12 11 34 34 H 1.08995 * 109.46788 * 299.99564 * 17 15 10 35 35 H 1.08992 * 109.47134 * 59.99783 * 17 15 10 36 36 H 1.08999 * 109.47352 * 55.00148 * 18 17 15 37 37 H 1.08996 * 109.56151 * 298.13450 * 20 19 18 38 38 H 1.08996 * 109.64858 * 177.85789 * 20 19 18 39 39 H 1.09000 * 109.57682 * 185.66236 * 21 20 19 40 40 H 1.09006 * 109.67815 * 65.34914 * 21 20 19 41 41 H 1.08999 * 109.55950 * 294.68541 * 22 21 20 42 42 H 1.09002 * 109.64873 * 174.41723 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6791 -4.1694 1.2682 12 6 1.7484 -5.3006 1.7099 13 6 0.9697 -5.1068 3.0126 14 6 2.1408 -6.0911 2.9597 15 6 2.6411 -4.1249 -1.1677 16 8 2.2474 -3.6636 -2.2181 17 6 3.6200 -5.2707 -1.1676 18 6 3.9510 -5.6586 -2.6101 19 8 2.7765 -6.1647 -3.2491 20 6 2.9899 -6.5825 -4.6009 21 6 4.0786 -7.6611 -4.6222 22 6 5.3278 -7.1175 -3.9204 23 8 4.9659 -6.6656 -2.6118 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.6886 -4.5594 1.1380 28 1 2.6868 -3.3877 2.0279 29 1 1.2548 -5.8448 0.9047 30 1 1.1207 -4.1736 3.5551 31 1 -0.0361 -5.5238 3.0644 32 1 1.9051 -7.1551 2.9769 33 1 3.0619 -5.8049 3.4676 34 1 4.5325 -4.9688 -0.6536 35 1 3.1793 -6.1250 -0.6540 36 1 4.3087 -4.7814 -3.1493 37 1 3.3091 -5.7300 -5.2003 38 1 2.0649 -6.9897 -5.0090 39 1 4.3208 -7.9151 -5.6541 40 1 3.7246 -8.5504 -4.1007 41 1 5.7356 -6.2851 -4.4940 42 1 6.0757 -7.9064 -3.8402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788662435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:59 Heat of formation + Delta-G solvation = -107.078187 kcal Electronic energy + Delta-G solvation = -23196.995583 eV Core-core repulsion = 19756.966453 eV Total energy + Delta-G solvation = -3440.029130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02305 -38.87232 -37.07233 -35.56215 -34.34606 -33.13713 -32.48384 -30.13573 -27.70149 -26.01909 -25.95559 -23.93188 -22.19277 -22.07889 -21.13462 -20.59773 -18.43479 -17.40939 -16.56173 -16.49128 -16.26864 -15.65358 -15.47659 -14.90258 -14.75871 -14.72190 -14.47136 -13.92690 -13.56985 -13.27223 -12.80010 -12.41972 -12.38157 -12.25765 -11.67777 -11.54968 -11.37689 -11.30987 -11.17318 -11.09653 -10.97691 -10.86122 -10.58677 -10.24161 -10.08217 -9.99337 -9.66381 -9.57955 -9.56473 -8.84783 -8.39711 -7.61648 -6.00612 -4.05177 3.32878 3.36839 3.38927 3.41789 3.47819 3.78549 3.95977 4.21440 4.48379 4.63248 4.64295 4.95746 4.96801 5.01880 5.08934 5.15131 5.22930 5.29018 5.33530 5.35634 5.44859 5.59473 5.65538 5.72285 5.77452 5.79884 5.82048 5.96087 5.97371 6.09539 6.12512 6.32249 6.53023 6.87848 7.13941 7.28312 7.51479 7.60303 7.96217 8.28121 8.46724 8.94268 9.14471 9.59650 11.07390 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.005228 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.300946 B = 5354.744808 C = 6735.685703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.248 3.752 10 N -0.594 5.594 11 C 0.141 3.859 12 C -0.167 4.167 13 C -0.175 4.175 14 C -0.181 4.181 15 C 0.513 3.487 16 O -0.531 6.531 17 C -0.128 4.128 18 C 0.265 3.735 19 O -0.374 6.374 20 C 0.057 3.943 21 C -0.193 4.193 22 C 0.059 3.941 23 O -0.398 6.398 24 H 0.263 0.737 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.610 -15.711 -1.634 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.075 0.925 9 C 0.129 3.871 10 N -0.325 5.325 11 C 0.017 3.983 12 C -0.186 4.186 13 C -0.212 4.212 14 C -0.219 4.219 15 C 0.299 3.701 16 O -0.408 6.408 17 C -0.168 4.168 18 C 0.170 3.830 19 O -0.294 6.294 20 C -0.020 4.020 21 C -0.231 4.231 22 C -0.018 4.018 23 O -0.319 6.319 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.119 -15.378 -1.925 17.496 hybrid contribution 0.545 0.936 -0.334 1.134 sum 8.665 -14.442 -2.260 16.993 Atomic orbital electron populations 1.69939 1.05963 1.26902 1.50534 1.24926 0.94852 0.99122 0.95170 0.86525 0.79668 0.83196 0.78171 1.20619 1.21184 1.19954 1.21449 0.93312 0.90743 1.50919 0.92521 1.19262 0.87412 0.81916 0.98466 1.48142 1.45805 1.34839 1.03728 1.21041 0.95352 0.94334 0.87585 1.22906 1.03053 1.00768 0.91910 1.23007 0.96144 1.01062 1.00939 1.22930 0.99689 0.97253 1.02023 1.19875 0.82380 0.83416 0.84454 1.90692 1.58016 1.61302 1.30779 1.21555 1.01165 0.99424 0.94647 1.22954 0.78173 0.87864 0.94009 1.88207 1.33337 1.82252 1.25561 1.22583 0.99213 0.95937 0.84219 1.22807 0.97598 1.00543 1.02109 1.22597 0.96142 0.99055 0.83971 1.88052 1.56634 1.58954 1.28222 0.92781 0.93931 0.94865 0.91159 0.89759 0.87879 0.88467 0.89200 0.89185 0.88845 0.87396 0.87923 0.91752 0.92814 0.88537 0.89994 0.90160 0.92887 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.25 6.56 5.16 -5.19 -0.03 6.54 16 10 N -0.59 -12.70 2.46 -175.05 -0.43 -13.13 16 11 C 0.14 2.33 5.49 -4.04 -0.02 2.31 16 12 C -0.17 -2.43 5.94 -90.62 -0.54 -2.97 16 13 C -0.17 -2.35 10.18 -26.69 -0.27 -2.62 16 14 C -0.18 -2.10 10.25 -26.70 -0.27 -2.37 16 15 C 0.51 10.94 7.55 -10.99 -0.08 10.85 16 16 O -0.53 -13.63 15.00 -8.84 -0.13 -13.76 16 17 C -0.13 -2.07 4.33 -27.88 -0.12 -2.19 16 18 C 0.27 4.31 2.80 37.16 0.10 4.41 16 19 O -0.37 -6.45 9.77 -64.75 -0.63 -7.08 16 20 C 0.06 0.73 6.96 37.29 0.26 0.99 16 21 C -0.19 -1.91 6.35 -26.46 -0.17 -2.08 16 22 C 0.06 0.63 6.96 37.29 0.26 0.89 16 23 O -0.40 -5.65 10.54 -59.03 -0.62 -6.27 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 26 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 27 H 0.07 0.97 6.44 -51.93 -0.33 0.64 16 28 H 0.08 1.45 7.81 -51.93 -0.41 1.04 16 29 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 30 H 0.10 1.34 8.03 -51.93 -0.42 0.92 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.11 1.51 7.40 -51.93 -0.38 1.12 16 35 H 0.10 1.53 8.03 -51.93 -0.42 1.11 16 36 H 0.07 1.11 7.95 -51.93 -0.41 0.69 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -33.84 347.44 -9.12 -42.95 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.95 Total: 1.01 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -1.30 Total: 0.15 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.31 Total: -39.16 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.39 Total: -27.11 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.84 -9.12 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788662435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.125 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds