Wall clock time and date at job start Tue Mar 31 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00656 * 2 1 4 4 H 1.48501 * 109.47210 * 240.00137 * 3 2 1 5 5 H 1.48500 * 109.46693 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47299 * 120.00062 * 3 2 1 7 7 C 1.37885 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.45525 * 180.02562 * 9 7 2 11 11 C 1.53198 * 109.31210 * 181.37395 * 10 9 7 12 12 N 1.46927 * 108.77121 * 305.36379 * 11 10 9 13 13 C 1.34777 * 120.63071 * 233.57905 * 12 11 10 14 14 O 1.21279 * 119.99833 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00131 * 180.02562 * 13 12 11 16 16 C 1.53005 * 109.46965 * 180.02562 * 15 13 12 17 17 O 1.42966 * 109.46864 * 185.00144 * 16 15 13 18 18 C 1.43092 * 113.77009 * 181.20773 * 17 16 15 19 19 C 1.53254 * 108.94434 * 57.96710 * 18 17 16 20 20 C 1.53260 * 108.95315 * 305.41533 * 19 18 17 21 21 O 1.42962 * 109.46998 * 65.00189 * 16 15 13 22 22 C 1.46930 * 118.73949 * 53.85949 * 12 11 10 23 23 C 1.53039 * 109.45031 * 300.06124 * 9 7 2 24 24 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.45694 * 60.03140 * 9 7 2 26 26 H 1.08995 * 109.50160 * 61.42555 * 10 9 7 27 27 H 1.08996 * 109.52293 * 301.33619 * 10 9 7 28 28 H 1.08993 * 109.58818 * 185.57697 * 11 10 9 29 29 H 1.09001 * 109.70312 * 65.21957 * 11 10 9 30 30 H 1.08991 * 109.47085 * 60.00325 * 15 13 12 31 31 H 1.09004 * 109.47071 * 300.00471 * 15 13 12 32 32 H 1.08993 * 109.46793 * 304.99864 * 16 15 13 33 33 H 1.09005 * 109.55052 * 298.12990 * 18 17 16 34 34 H 1.08997 * 109.64560 * 177.86367 * 18 17 16 35 35 H 1.09002 * 109.57516 * 65.28886 * 19 18 17 36 36 H 1.08998 * 109.57627 * 185.54173 * 19 18 17 37 37 H 1.08993 * 109.56117 * 174.43118 * 20 19 18 38 38 H 1.09006 * 109.55518 * 294.75178 * 20 19 18 39 39 H 1.09000 * 109.58685 * 65.92658 * 22 12 11 40 40 H 1.09001 * 109.58592 * 186.34555 * 22 12 11 41 41 H 1.08996 * 109.49789 * 298.57497 * 23 9 7 42 42 H 1.08999 * 109.49526 * 58.67127 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 6 2.2455 -3.6623 0.0027 11 6 1.4764 -4.9868 -0.0307 12 7 0.5222 -5.0078 1.0863 13 6 0.5113 -6.0332 1.9609 14 8 1.2943 -6.9500 1.8302 15 6 -0.4740 -6.0405 3.1012 16 6 -0.2759 -7.3059 3.9382 17 8 -1.2845 -7.3711 4.9494 18 6 -1.1687 -8.5108 5.8068 19 6 0.2113 -8.4940 6.4731 20 6 1.2880 -8.4081 5.3858 21 8 1.0142 -7.2733 4.5533 22 6 -0.4241 -3.8927 1.2282 23 6 0.3705 -2.5782 1.2510 24 1 -0.4849 0.8401 -0.0004 25 1 0.6243 -2.5575 -0.8883 26 1 2.8555 -3.6186 0.9050 27 1 2.8883 -3.5926 -0.8748 28 1 2.1748 -5.8175 0.0696 29 1 0.9369 -5.0747 -0.9738 30 1 -1.4890 -6.0220 2.7045 31 1 -0.3123 -5.1625 3.7267 32 1 -0.3496 -8.1824 3.2945 33 1 -1.2792 -9.4222 5.2191 34 1 -1.9440 -8.4738 6.5721 35 1 0.2881 -7.6293 7.1323 36 1 0.3487 -9.4075 7.0516 37 1 2.2676 -8.2960 5.8503 38 1 1.2703 -9.3156 4.7822 39 1 -1.1155 -3.8908 0.3856 40 1 -0.9800 -4.0016 2.1594 41 1 0.9984 -2.5448 2.1413 42 1 -0.3220 -1.7364 1.2619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793795370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:56 Heat of formation + Delta-G solvation = -139.633369 kcal Electronic energy + Delta-G solvation = -23196.192195 eV Core-core repulsion = 19754.751366 eV Total energy + Delta-G solvation = -3441.440829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24664 -39.30723 -36.76918 -35.68576 -33.52105 -33.29783 -31.49188 -30.30043 -29.56708 -26.21622 -26.10746 -24.03473 -22.70429 -22.09187 -21.28344 -19.79096 -18.31194 -17.61039 -16.87071 -16.49154 -16.26229 -15.81734 -15.37337 -14.86950 -14.79418 -14.65786 -14.52337 -13.40497 -13.21032 -13.15917 -12.99342 -12.90287 -12.49279 -12.42427 -11.83129 -11.70113 -11.59731 -11.28252 -11.23861 -11.11209 -10.91273 -10.65356 -10.37077 -10.13855 -10.08883 -9.75140 -9.63570 -9.37459 -9.15689 -8.91746 -8.36841 -7.97322 -6.02213 -4.08204 3.00000 3.12726 3.30968 3.35530 3.38805 3.60021 3.81099 4.41968 4.51554 4.52832 4.76908 4.85621 4.89356 5.11005 5.14565 5.20257 5.27330 5.42879 5.51796 5.60190 5.65317 5.75435 5.83563 5.84068 5.97960 6.10868 6.17677 6.29742 6.47182 6.68240 6.73575 6.91763 7.05459 7.10908 7.17178 7.29660 7.67434 7.93116 7.94216 8.05022 8.41432 8.57806 8.94922 9.56800 11.03265 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029285 B = 0.003618 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.893010 B = 7736.534876 C = 7967.157858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.600 5.600 13 C 0.519 3.481 14 O -0.551 6.551 15 C -0.127 4.127 16 C 0.266 3.734 17 O -0.395 6.395 18 C 0.060 3.940 19 C -0.194 4.194 20 C 0.058 3.942 21 O -0.375 6.375 22 C 0.100 3.900 23 C -0.124 4.124 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.876 -15.343 9.433 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.333 5.333 13 C 0.306 3.694 14 O -0.430 6.430 15 C -0.167 4.167 16 C 0.171 3.829 17 O -0.316 6.316 18 C -0.017 4.017 19 C -0.232 4.232 20 C -0.019 4.019 21 O -0.295 6.295 22 C -0.022 4.022 23 C -0.163 4.163 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.631 -15.388 9.328 18.357 hybrid contribution 0.417 0.651 0.159 0.789 sum -3.214 -14.737 9.488 17.819 Atomic orbital electron populations 1.69823 1.05836 1.26562 1.50887 1.24955 0.94877 0.99031 0.95069 0.86673 0.79633 0.83171 0.78614 1.20336 1.21314 1.20329 1.21180 0.92932 0.90608 1.50363 0.92763 1.18628 0.92645 0.91708 0.93971 1.22007 0.98922 0.94232 1.00992 1.21682 0.91736 0.99740 0.87730 1.48202 1.36006 1.21157 1.27886 1.20043 0.84433 0.82192 0.82712 1.90654 1.41350 1.36344 1.74602 1.21489 1.00843 0.98562 0.95816 1.22898 0.75981 0.97810 0.86222 1.88068 1.51255 1.46277 1.46043 1.22607 0.97205 0.88446 0.93443 1.22812 0.96647 1.03952 0.99759 1.22644 0.98740 0.89277 0.91205 1.88261 1.33770 1.43751 1.63749 1.22179 0.91551 0.87653 1.00776 1.22099 1.00004 0.94529 0.99630 0.92930 0.95461 0.92918 0.92185 0.90374 0.92248 0.86877 0.87165 0.91932 0.92909 0.88345 0.89979 0.89896 0.88414 0.92879 0.91777 0.91336 0.94128 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 11.31 55.43 0.63 -23.77 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.71 8.56 -34.44 -0.29 -14.00 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.17 2.06 -91.73 -0.19 0.98 16 10 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 11 C 0.11 2.10 6.43 -3.71 -0.02 2.07 16 12 N -0.60 -10.87 2.97 -172.50 -0.51 -11.39 16 13 C 0.52 9.21 7.58 -10.98 -0.08 9.12 16 14 O -0.55 -11.19 14.83 -8.83 -0.13 -11.32 16 15 C -0.13 -1.84 4.13 -27.88 -0.12 -1.95 16 16 C 0.27 3.79 2.80 37.16 0.10 3.90 16 17 O -0.40 -5.12 10.54 -59.03 -0.62 -5.74 16 18 C 0.06 0.56 6.96 37.29 0.26 0.82 16 19 C -0.19 -1.71 6.34 -26.47 -0.17 -1.88 16 20 C 0.06 0.65 6.99 37.29 0.26 0.91 16 21 O -0.38 -5.83 9.78 -64.75 -0.63 -6.47 16 22 C 0.10 1.78 6.37 -3.49 -0.02 1.75 16 23 C -0.12 -2.73 5.17 -26.39 -0.14 -2.87 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.11 1.36 7.93 -51.93 -0.41 0.95 16 31 H 0.11 1.59 7.70 -51.93 -0.40 1.19 16 32 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.03 5.93 -51.93 -0.31 0.72 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -30.61 330.58 -8.78 -39.39 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.82 Total: 0.72 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -0.64 Total: -2.29 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.12 Total: -35.16 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -1.39 Total: -23.53 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.61 -8.78 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793795370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.248 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds