Wall clock time and date at job start Tue Mar 31 2020 06:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47365 * 2 1 4 4 H 1.09000 * 109.46497 * 55.00406 * 3 2 1 5 5 C 1.52997 * 109.47143 * 295.00176 * 3 2 1 6 6 C 1.52999 * 109.46991 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 3 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 5 9 9 C 1.52996 * 109.46969 * 175.00246 * 3 2 1 10 10 H 1.08996 * 109.47452 * 59.99938 * 9 3 2 11 11 C 1.50703 * 109.47130 * 300.00119 * 9 3 2 12 12 O 1.20825 * 120.00021 * 0.02562 * 11 9 3 13 13 O 1.34225 * 119.99932 * 180.02562 * 11 9 3 14 14 C 1.45200 * 116.99993 * 179.97438 * 13 11 9 15 15 C 1.50703 * 109.46996 * 180.02562 * 14 13 11 16 16 O 1.21287 * 120.00369 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00023 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00276 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99774 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99873 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00203 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46814 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.46929 * 120.00454 * 22 20 18 25 25 H 1.48505 * 109.47212 * 240.00427 * 22 20 18 26 26 H 1.08994 * 109.47229 * 59.99610 * 1 2 3 27 27 H 1.09001 * 109.47405 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46768 * 299.99796 * 1 2 3 29 29 H 1.09000 * 109.46883 * 239.99935 * 2 1 3 30 30 H 1.09002 * 109.47042 * 120.00103 * 2 1 3 31 31 H 1.09002 * 109.47153 * 60.00035 * 5 3 2 32 32 H 1.08993 * 109.47194 * 300.00323 * 5 3 2 33 33 H 1.08993 * 109.47839 * 300.00447 * 6 5 3 34 34 H 1.09000 * 109.47160 * 180.02562 * 6 5 3 35 35 H 1.09001 * 109.46801 * 59.99811 * 7 6 5 36 36 H 1.09001 * 109.46998 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 38 38 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 39 39 H 1.08993 * 109.47516 * 300.00274 * 14 13 11 40 40 H 1.09004 * 109.46851 * 60.00737 * 14 13 11 41 41 H 0.97004 * 119.99729 * 0.02562 * 17 15 14 42 42 H 0.96994 * 119.99951 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 2.1449 3.5692 -1.3070 7 6 3.6697 3.5714 -1.1811 8 6 4.0745 2.8873 0.1262 9 6 3.5649 1.4442 0.1257 10 1 3.9995 0.9052 -0.7161 11 6 3.9636 0.7704 1.4133 12 8 3.1152 0.3332 2.1543 13 8 5.2612 0.6559 1.7371 14 6 5.5715 -0.0041 2.9927 15 6 7.0657 -0.0388 3.1860 16 8 7.7971 0.4455 2.3483 17 7 7.5894 -0.6079 4.2898 18 6 8.9487 -0.6400 4.4654 19 1 9.5998 -0.2088 3.7195 20 6 9.4885 -1.2263 5.6036 21 7 8.6962 -1.7506 6.5115 22 14 11.3406 -1.2694 5.8433 23 1 12.0046 -0.6166 4.6865 24 1 11.6952 -0.5454 7.0903 25 1 11.7941 -2.6799 5.9438 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5490 2.1253 -1.3968 32 1 2.0698 1.5875 -2.1491 33 1 1.7101 4.1080 -0.4652 34 1 1.8561 4.0567 -2.2382 35 1 4.1045 3.0326 -2.0230 36 1 4.0328 4.5991 -1.1813 37 1 5.1608 2.8893 0.2161 38 1 3.6396 3.4261 0.9680 39 1 5.1118 0.5443 3.8148 40 1 5.1836 -1.0226 2.9733 41 1 7.0045 -0.9956 4.9595 42 1 9.0730 -2.1602 7.3059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796327111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:44 Heat of formation + Delta-G solvation = -156.414347 kcal Electronic energy + Delta-G solvation = -22578.888138 eV Core-core repulsion = 19136.719631 eV Total energy + Delta-G solvation = -3442.168507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78509 -38.77583 -37.89245 -36.05711 -34.03341 -33.92143 -31.60726 -31.33259 -29.21436 -28.29946 -24.88053 -24.04554 -23.67528 -20.93474 -20.76155 -19.82911 -19.54965 -18.05521 -17.48574 -16.46745 -16.25574 -15.62285 -15.15977 -14.86391 -14.51579 -14.36910 -14.17241 -13.96708 -13.48372 -13.38974 -13.25010 -12.75874 -12.62858 -12.23641 -11.94404 -11.77263 -11.67795 -11.61905 -11.34401 -11.21314 -11.14018 -10.90988 -10.79325 -10.59471 -10.38730 -10.32594 -10.29743 -10.15589 -9.73835 -9.60975 -8.50579 -8.07551 -6.49513 -3.91436 2.36149 2.78097 3.12058 3.24069 3.31734 3.74945 4.11644 4.37388 4.44676 4.53661 4.83394 4.87068 4.97639 5.10022 5.15711 5.16146 5.18598 5.22333 5.26888 5.35207 5.50067 5.54889 5.56344 5.66721 5.71653 5.80940 5.86791 5.88939 5.91866 5.99049 6.02446 6.07527 6.13826 6.15529 6.32239 6.33600 6.76736 7.48490 7.89638 8.00381 8.49531 9.07916 9.40357 9.90382 10.67873 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032191 B = 0.003186 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.604119 B = 8787.687823 C = 9462.402350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C -0.069 4.069 4 H 0.078 0.922 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.114 4.114 9 C -0.073 4.073 10 H 0.107 0.893 11 C 0.460 3.540 12 O -0.510 6.510 13 O -0.325 6.325 14 C 0.060 3.940 15 C 0.439 3.561 16 O -0.576 6.576 17 N -0.554 5.554 18 C -0.302 4.302 19 H 0.106 0.894 20 C 0.024 3.976 21 N -0.897 5.897 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.395 0.605 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 6.645 -12.724 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.088 4.088 4 H 0.097 0.903 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.151 4.151 9 C -0.092 4.092 10 H 0.125 0.875 11 C 0.304 3.696 12 O -0.399 6.399 13 O -0.239 6.239 14 C -0.018 4.018 15 C 0.224 3.776 16 O -0.460 6.460 17 N -0.191 5.191 18 C -0.431 4.431 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.228 0.772 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.872 6.737 -12.862 20.784 hybrid contribution 0.456 -0.487 0.866 1.093 sum -14.416 6.250 -11.996 19.769 Atomic orbital electron populations 1.21750 0.95938 1.01323 1.01436 1.21867 0.96121 0.96080 1.03299 1.21057 0.91835 0.97220 0.98658 0.90325 1.21643 1.00955 0.95541 0.96999 1.21592 0.95868 0.96788 1.01789 1.21532 0.95798 1.00778 0.97343 1.21556 1.02391 0.92542 0.98645 1.21128 0.97409 0.97432 0.93234 0.87467 1.23810 0.80836 0.76773 0.88211 1.90581 1.51456 1.46109 1.51736 1.86560 1.26657 1.70878 1.39802 1.22727 0.97012 0.98020 0.84034 1.19345 0.87710 0.85692 0.84887 1.90557 1.60849 1.50447 1.44109 1.41719 1.08204 1.50815 1.18381 1.19778 0.81595 1.35943 1.05762 0.87574 1.25313 1.00743 0.96428 0.95318 1.69623 1.35731 1.38128 1.10331 0.85745 0.81804 0.77999 0.78487 1.19079 1.20629 1.20622 0.92979 0.93044 0.92795 0.92562 0.89353 0.91287 0.91750 0.91906 0.91936 0.91563 0.91452 0.89843 0.91421 0.89671 0.89669 0.77184 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.14 -1.47 5.14 -26.73 -0.14 -1.61 16 3 C -0.07 -0.71 1.36 -90.62 -0.12 -0.84 16 4 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 5 C -0.11 -0.92 4.96 -26.73 -0.13 -1.05 16 6 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 7 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 8 C -0.11 -1.24 5.14 -26.71 -0.14 -1.38 16 9 C -0.07 -0.86 2.17 -91.75 -0.20 -1.06 16 10 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 11 C 0.46 7.26 6.93 36.01 0.25 7.51 16 12 O -0.51 -8.69 13.42 -18.75 -0.25 -8.94 16 13 O -0.32 -6.10 9.66 -45.89 -0.44 -6.54 16 14 C 0.06 1.15 5.94 36.01 0.21 1.37 16 15 C 0.44 10.69 7.86 -10.98 -0.09 10.60 16 16 O -0.58 -16.10 16.08 -14.11 -0.23 -16.33 16 17 N -0.55 -14.12 5.29 -10.96 -0.06 -14.18 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.11 3.08 7.16 -52.49 -0.38 2.70 16 20 C 0.02 0.64 5.50 -17.46 -0.10 0.55 16 21 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 22 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 26 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.19 5.42 -51.93 -0.28 0.91 16 31 H 0.07 0.50 6.57 -51.93 -0.34 0.16 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.03 8.11 -51.93 -0.42 0.61 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 40 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 41 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 340.38 15.07 5.13 5.13 Total: -1.00 -31.26 340.38 -7.41 -38.67 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.71 Total: 7.58 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -0.55 Total: 2.33 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.67 Total: -37.64 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.92 Total: -31.80 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.26 -7.41 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796327111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.748 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds