Wall clock time and date at job start Tue Mar 31 2020 06:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 H 1.09002 * 109.47097 * 305.00183 * 3 2 1 5 5 C 1.53005 * 109.47197 * 64.99984 * 3 2 1 6 6 C 1.52997 * 109.47452 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 3 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 5 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 9 8 7 12 12 O 1.20822 * 120.00115 * 240.00066 * 11 9 8 13 13 O 1.34234 * 119.99749 * 59.99914 * 11 9 8 14 14 C 1.45203 * 117.00028 * 179.97438 * 13 11 9 15 15 C 1.50692 * 109.47295 * 180.02562 * 14 13 11 16 16 O 1.21297 * 119.99723 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00349 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00175 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00178 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99879 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00017 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00186 * 359.97438 * 20 18 17 23 23 H 1.48493 * 109.47169 * 89.99923 * 22 20 18 24 24 H 1.48498 * 109.47091 * 210.00357 * 22 20 18 25 25 H 1.48505 * 109.46830 * 330.00309 * 22 20 18 26 26 H 1.09001 * 109.47305 * 299.99210 * 1 2 3 27 27 H 1.08993 * 109.47729 * 60.00346 * 1 2 3 28 28 H 1.09004 * 109.46546 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47305 * 240.00790 * 2 1 3 30 30 H 1.08993 * 109.47729 * 119.99654 * 2 1 3 31 31 H 1.09002 * 109.46935 * 60.00099 * 5 3 2 32 32 H 1.09001 * 109.46812 * 300.00441 * 5 3 2 33 33 H 1.08993 * 109.47194 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.46695 * 59.99734 * 6 5 3 35 35 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 36 36 H 1.09004 * 109.46733 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 38 38 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.47093 * 300.00565 * 14 13 11 40 40 H 1.09002 * 109.46827 * 59.99933 * 14 13 11 41 41 H 0.97004 * 119.99588 * 359.97438 * 17 15 14 42 42 H 0.97003 * 120.00397 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 2.1445 3.5693 1.3072 7 6 3.6694 3.5717 1.1811 8 6 4.0741 2.8877 -0.1263 9 6 3.5647 1.4451 -0.1261 10 1 3.9997 0.9063 0.7157 11 6 3.9639 0.7711 -1.4135 12 8 3.1158 0.3338 -2.1547 13 8 5.2617 0.6568 -1.7369 14 6 5.5726 -0.0043 -2.9917 15 6 7.0668 -0.0399 -3.1840 16 8 7.7978 0.4440 -2.3457 17 7 7.5909 -0.6092 -4.2874 18 6 8.9503 -0.6420 -4.4621 19 1 9.6012 -0.2119 -3.7153 20 6 9.4906 -1.2294 -5.5995 21 7 10.7937 -1.2613 -5.7667 22 14 8.3649 -1.9752 -6.8902 23 1 8.0105 -0.9410 -7.8951 24 1 9.0609 -3.1013 -7.5631 25 1 7.1282 -2.4762 -6.2384 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 2.0698 1.5876 2.1492 32 1 0.5488 2.1252 1.3969 33 1 1.8558 4.0567 2.2383 34 1 1.7095 4.1080 0.4653 35 1 4.1043 3.0329 2.0228 36 1 4.0322 4.5996 1.1805 37 1 3.6391 3.4265 -0.9681 38 1 5.1604 2.8891 -0.2159 39 1 5.1848 -1.0229 -2.9716 40 1 5.1129 0.5433 -3.8145 41 1 7.0063 -0.9964 -4.9577 42 1 11.1710 -1.6718 -6.5606 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796327142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:50 Heat of formation + Delta-G solvation = -148.986725 kcal Electronic energy + Delta-G solvation = -22637.690326 eV Core-core repulsion = 19195.843905 eV Total energy + Delta-G solvation = -3441.846421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86690 -38.88415 -38.04981 -36.15799 -34.08771 -33.97367 -31.81900 -31.59999 -29.25811 -28.52502 -24.85842 -24.04261 -23.66199 -20.97698 -20.80360 -19.88503 -19.61913 -18.57414 -17.57135 -16.52189 -16.36102 -15.62273 -15.22157 -15.01414 -14.74062 -14.46500 -14.22763 -13.82422 -13.47277 -13.42686 -13.14492 -12.80893 -12.75473 -12.37383 -12.21945 -12.10066 -11.81694 -11.72069 -11.38935 -11.28342 -11.22532 -10.95076 -10.85403 -10.64742 -10.63918 -10.42881 -10.19625 -10.05153 -9.80279 -9.66973 -8.65145 -8.28703 -6.38837 -3.91644 2.27690 2.67840 2.99061 3.03691 3.12288 3.56740 4.04117 4.28588 4.37431 4.44299 4.66077 4.83075 4.91583 5.04572 5.09979 5.11800 5.12714 5.18063 5.22754 5.30051 5.39686 5.47235 5.52883 5.56383 5.60897 5.69413 5.76833 5.83697 5.85433 5.88059 5.95244 5.99176 6.10075 6.11451 6.26553 6.28275 6.65903 7.45643 7.86747 8.01897 8.48674 8.84341 9.30589 9.66706 10.73517 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029100 B = 0.003422 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.977427 B = 8180.305646 C = 8917.820629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C -0.069 4.069 4 H 0.078 0.922 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.114 4.114 9 C -0.073 4.073 10 H 0.108 0.892 11 C 0.462 3.538 12 O -0.510 6.510 13 O -0.323 6.323 14 C 0.057 3.943 15 C 0.448 3.552 16 O -0.557 6.557 17 N -0.580 5.580 18 C -0.308 4.308 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.876 5.876 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.268 1.268 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.373 0.627 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.485 5.619 11.193 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C -0.088 4.088 4 H 0.097 0.903 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.092 4.092 10 H 0.126 0.874 11 C 0.305 3.695 12 O -0.399 6.399 13 O -0.238 6.238 14 C -0.021 4.021 15 C 0.233 3.767 16 O -0.438 6.438 17 N -0.220 5.220 18 C -0.436 4.436 19 H 0.140 0.860 20 C -0.159 4.159 21 N -0.515 5.515 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.194 1.194 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.206 0.794 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.004 5.746 11.387 23.725 hybrid contribution -0.760 -0.832 -1.364 1.769 sum -20.764 4.914 10.024 23.575 Atomic orbital electron populations 1.21749 0.95918 1.01329 1.01461 1.21863 0.96141 0.96077 1.03273 1.21062 0.91790 0.97217 0.98707 0.90331 1.21646 1.00972 0.95563 0.96967 1.21593 0.95872 0.96763 1.01819 1.21532 0.95789 1.00825 0.97318 1.21556 1.02424 0.92479 0.98698 1.21130 0.97443 0.97488 0.93149 0.87390 1.23841 0.80719 0.76711 0.88237 1.90578 1.51456 1.46139 1.51724 1.86574 1.26787 1.70811 1.39596 1.22728 0.96747 0.98164 0.84442 1.19215 0.87749 0.85286 0.84459 1.90603 1.60806 1.49087 1.43351 1.42040 1.08132 1.52819 1.19043 1.19427 0.79883 1.36904 1.07427 0.86016 1.25034 0.95905 0.97413 0.97528 1.69613 1.09949 1.43472 1.28449 0.86680 0.80575 0.80002 0.82258 1.19407 1.19948 1.19364 0.92943 0.92801 0.93047 0.89420 0.92524 0.91721 0.91273 0.91900 0.91912 0.91521 0.91403 0.91415 0.89793 0.89554 0.89535 0.79410 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.67 37.16 0.36 -0.93 16 2 C -0.14 -1.40 5.14 -26.73 -0.14 -1.54 16 3 C -0.07 -0.68 1.36 -90.62 -0.12 -0.80 16 4 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 5 C -0.11 -0.88 4.96 -26.73 -0.13 -1.01 16 6 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 7 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 8 C -0.11 -1.19 5.14 -26.73 -0.14 -1.33 16 9 C -0.07 -0.82 2.16 -91.78 -0.20 -1.02 16 10 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 11 C 0.46 6.91 6.94 36.00 0.25 7.16 16 12 O -0.51 -8.23 13.42 -18.75 -0.25 -8.48 16 13 O -0.32 -5.79 9.66 -45.91 -0.44 -6.23 16 14 C 0.06 1.03 5.94 36.00 0.21 1.24 16 15 C 0.45 10.44 7.86 -10.99 -0.09 10.35 16 16 O -0.56 -15.34 16.08 -14.12 -0.23 -15.56 16 17 N -0.58 -13.85 5.09 -10.97 -0.06 -13.91 16 18 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 20 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 21 N -0.88 -25.23 13.96 55.50 0.77 -24.45 16 22 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.33 6.52 56.52 0.37 -4.97 16 26 H 0.05 0.39 6.57 -51.93 -0.34 0.05 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 1.12 5.42 -51.93 -0.28 0.84 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 39 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 40 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 41 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 42 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -32.28 337.26 -7.06 -39.34 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.67 Total: 7.55 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.56 Total: 2.27 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.72 Total: -38.36 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.92 Total: -30.28 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.28 -7.06 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796327142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.649 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds