Wall clock time and date at job start Tue Mar 31 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53037 * 109.46362 * 2 1 4 4 C 1.53192 * 109.31578 * 181.37321 * 3 2 1 5 5 N 1.46929 * 108.77213 * 305.36325 * 4 3 2 6 6 C 1.34781 * 120.62800 * 233.58142 * 5 4 3 7 7 O 1.21345 * 120.00366 * 354.45946 * 6 5 4 8 8 C 1.49438 * 119.99562 * 174.45312 * 6 5 4 9 9 O 1.21252 * 120.00384 * 353.76453 * 8 6 5 10 10 O 1.34543 * 119.99712 * 173.76583 * 8 6 5 11 11 C 1.45199 * 117.00057 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.46985 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46854 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47034 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00156 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00066 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00120 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00064 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46746 * 90.00210 * 18 16 14 20 20 H 1.48499 * 109.47234 * 210.00113 * 18 16 14 21 21 H 1.48497 * 109.47353 * 330.00401 * 18 16 14 22 22 C 1.46926 * 118.74054 * 53.85864 * 5 4 3 23 23 C 1.53043 * 109.44651 * 120.05870 * 2 1 3 24 24 H 1.08999 * 109.47231 * 59.99881 * 1 2 3 25 25 H 1.08996 * 109.47610 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46607 * 300.00716 * 1 2 3 27 27 H 1.08995 * 109.45941 * 240.02185 * 2 1 3 28 28 H 1.08999 * 109.50044 * 61.41747 * 3 2 1 29 29 H 1.09004 * 109.49813 * 301.31710 * 3 2 1 30 30 H 1.08999 * 109.58913 * 185.57570 * 4 3 2 31 31 H 1.09006 * 109.70393 * 65.21758 * 4 3 2 32 32 H 1.09004 * 109.46792 * 300.00346 * 11 10 8 33 33 H 1.08997 * 109.46854 * 59.99849 * 11 10 8 34 34 H 1.08996 * 109.46867 * 299.99253 * 12 11 10 35 35 H 1.08995 * 109.47220 * 59.99988 * 12 11 10 36 36 H 1.09001 * 109.47285 * 299.99618 * 13 12 11 37 37 H 1.08997 * 109.46811 * 59.99607 * 13 12 11 38 38 H 0.96994 * 120.00228 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.58607 * 65.92790 * 22 5 4 40 40 H 1.09001 * 109.58708 * 186.35270 * 22 5 4 41 41 H 1.08996 * 109.50100 * 298.56588 * 23 2 1 42 42 H 1.09000 * 109.49651 * 58.67123 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4429 0.0000 4 6 3.5714 1.4391 -0.0346 5 7 4.0676 0.6238 1.0824 6 6 4.9618 1.1275 1.9561 7 8 5.4405 2.2266 1.7685 8 6 5.3634 0.3325 3.1560 9 8 4.8038 -0.7139 3.4051 10 8 6.3459 0.7779 3.9600 11 6 6.6838 -0.0462 5.1068 12 6 7.8133 0.6178 5.8968 13 6 8.1689 -0.2503 7.1056 14 6 9.2818 0.4033 7.8834 15 1 9.6946 1.3436 7.5489 16 6 9.7738 -0.1995 9.0216 17 7 9.2722 -1.3452 9.4282 18 14 11.1540 0.6104 9.9854 19 1 10.5763 1.5133 11.0132 20 1 11.9738 -0.4348 10.6492 21 1 12.0089 1.3966 9.0601 22 6 3.5753 -0.7532 1.2254 23 6 2.0395 -0.7228 1.2490 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8900 27 1 1.8931 -0.5135 -0.8902 28 1 1.6977 1.9498 0.9023 29 1 1.6576 1.9639 -0.8778 30 1 3.9418 2.4594 0.0649 31 1 3.9167 1.0155 -0.9778 32 1 5.8081 -0.1546 5.7468 33 1 7.0079 -1.0291 4.7649 34 1 8.6890 0.7265 5.2570 35 1 7.4887 1.6005 6.2386 36 1 7.2930 -0.3586 7.7453 37 1 8.4932 -1.2332 6.7641 38 1 9.6181 -1.7691 10.2291 39 1 3.9187 -1.3533 0.3828 40 1 3.9482 -1.1797 2.1566 41 1 1.6974 -0.1956 2.1395 42 1 1.6569 -1.7434 1.2603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805568302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:20 Heat of formation + Delta-G solvation = -124.228488 kcal Electronic energy + Delta-G solvation = -22092.444899 eV Core-core repulsion = 18651.672076 eV Total energy + Delta-G solvation = -3440.772823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28191 -39.59907 -38.03349 -36.91373 -34.27634 -33.96658 -31.74812 -31.47902 -28.93196 -27.48499 -25.66176 -23.73931 -23.54887 -22.49170 -21.08676 -20.43473 -19.71591 -17.86830 -17.56496 -16.80903 -16.57421 -16.11969 -15.46851 -15.15354 -14.80789 -14.56723 -14.47910 -14.23365 -13.95442 -13.53314 -13.40268 -13.17764 -12.32061 -12.27755 -12.24610 -12.16415 -12.00302 -11.75536 -11.54445 -11.21537 -11.00737 -10.80682 -10.78921 -10.68456 -10.62090 -10.52491 -9.78604 -9.69894 -9.38707 -9.18248 -9.07488 -8.40122 -6.05101 -4.08004 1.02708 1.81440 2.86892 3.26004 3.31087 3.37245 3.41306 4.24834 4.37607 4.39391 4.43070 4.46290 4.72278 4.92197 5.00631 5.13187 5.24870 5.26515 5.31074 5.36864 5.41909 5.46157 5.46542 5.56838 5.61051 5.66183 5.74591 5.80853 5.89897 6.02610 6.05004 6.39095 6.48931 6.73568 6.80420 6.93908 7.30410 7.57450 7.67578 7.71473 7.93096 8.33909 8.98135 9.56520 11.06349 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.043725 B = 0.002583 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.210909 B =10838.448459 C =11274.789491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.129 4.129 4 C 0.110 3.890 5 N -0.581 5.581 6 C 0.532 3.468 7 O -0.493 6.493 8 C 0.460 3.540 9 O -0.479 6.479 10 O -0.323 6.323 11 C 0.063 3.937 12 C -0.110 4.110 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.043 3.957 23 C -0.125 4.125 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.067 0.933 40 H 0.157 0.843 41 H 0.068 0.932 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 1.327 -20.939 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.167 4.167 4 C -0.012 4.012 5 N -0.317 5.317 6 C 0.314 3.686 7 O -0.367 6.367 8 C 0.300 3.700 9 O -0.369 6.369 10 O -0.236 6.236 11 C -0.009 4.009 12 C -0.148 4.148 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.078 4.078 23 C -0.163 4.163 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.896 1.490 -20.766 26.812 hybrid contribution 0.567 0.118 0.582 0.821 sum -16.329 1.608 -20.184 26.011 Atomic orbital electron populations 1.21822 0.94900 1.01860 1.01821 1.21190 0.95868 0.95779 0.98678 1.21999 0.94487 0.97176 1.03068 1.21773 0.94127 0.97062 0.88225 1.47900 1.41617 1.15355 1.26790 1.18942 0.80879 0.86102 0.82704 1.90805 1.52154 1.19939 1.73760 1.23422 0.78503 0.83811 0.84274 1.90352 1.51854 1.23487 1.71223 1.86678 1.48164 1.51619 1.37138 1.23782 1.00171 0.93920 0.83043 1.21812 0.94736 1.00657 0.97601 1.19057 0.96945 0.94714 0.90492 1.21168 1.18423 1.07158 1.09219 0.92351 1.25027 0.97062 0.94934 0.97445 1.69959 1.42464 1.16724 1.24270 0.86533 0.81994 0.79037 0.80103 1.20593 1.21194 1.19779 1.23420 0.95024 0.81174 1.08142 1.22002 0.94914 1.01267 0.98121 0.92682 0.92529 0.92627 0.90970 0.91249 0.90348 0.88593 0.90740 0.90833 0.90820 0.91844 0.91836 0.96159 0.96153 0.92877 0.91424 0.82737 0.91374 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.19 37.16 0.34 -0.48 16 2 C -0.10 -0.61 2.68 -90.58 -0.24 -0.86 16 3 C -0.13 -0.87 5.36 -26.61 -0.14 -1.01 16 4 C 0.11 0.92 6.41 -3.71 -0.02 0.90 16 5 N -0.58 -6.31 2.97 -173.01 -0.51 -6.82 16 6 C 0.53 7.52 7.75 -11.59 -0.09 7.43 16 7 O -0.49 -8.23 16.41 -7.56 -0.12 -8.35 16 8 C 0.46 7.06 7.92 35.40 0.28 7.35 16 9 O -0.48 -7.24 12.87 -19.07 -0.25 -7.48 16 10 O -0.32 -5.63 10.09 -45.06 -0.45 -6.09 16 11 C 0.06 1.13 5.47 37.16 0.20 1.33 16 12 C -0.11 -2.28 5.53 -26.73 -0.15 -2.43 16 13 C 0.03 0.63 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 18 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.04 0.40 6.31 -3.48 -0.02 0.38 16 23 C -0.12 -0.96 5.38 -26.38 -0.14 -1.10 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.90 7.04 -51.93 -0.37 0.54 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.16 1.76 3.74 -56.92 -0.21 1.54 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -31.06 345.12 -7.84 -38.90 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -6.88 Total: -4.57 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.54 Total: -1.43 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.22 Total: -32.74 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.82 Total: -21.92 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.06 -7.84 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805568302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.324 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds