Wall clock time and date at job start Tue Mar 31 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00083 * 2 1 4 4 H 1.48501 * 109.46877 * 239.99989 * 3 2 1 5 5 H 1.48496 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47004 * 120.00073 * 3 2 1 7 7 C 1.37884 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99374 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.53011 * 109.46967 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46781 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47103 * 180.02562 * 11 10 9 13 13 C 1.50691 * 109.47288 * 180.02562 * 12 11 10 14 14 O 1.20826 * 120.00450 * 359.97438 * 13 12 11 15 15 O 1.34229 * 119.99901 * 180.02562 * 13 12 11 16 16 C 1.45202 * 116.99973 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47079 * 179.97438 * 16 15 13 18 18 N 1.46498 * 109.47601 * 64.99534 * 17 16 15 19 19 C 1.46768 * 124.34879 * 89.99607 * 18 17 16 20 20 C 1.54480 * 105.55098 * 197.08340 * 19 18 17 21 21 C 1.54631 * 101.76472 * 334.54015 * 20 19 18 22 22 C 1.34621 * 124.47196 * 270.02849 * 18 17 16 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 18 17 24 24 H 0.96999 * 119.99919 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47372 * 59.99974 * 9 7 2 26 26 H 1.09001 * 109.47024 * 299.99663 * 9 7 2 27 27 H 1.08996 * 109.47152 * 59.99770 * 10 9 7 28 28 H 1.08995 * 109.46769 * 299.99284 * 10 9 7 29 29 H 1.08996 * 109.47356 * 60.00028 * 11 10 9 30 30 H 1.09001 * 109.47225 * 299.99604 * 11 10 9 31 31 H 1.09000 * 109.47228 * 59.99324 * 12 11 10 32 32 H 1.09001 * 109.46712 * 299.99864 * 12 11 10 33 33 H 1.08998 * 109.47371 * 60.00044 * 16 15 13 34 34 H 1.08996 * 109.47060 * 299.99418 * 16 15 13 35 35 H 1.09002 * 109.47341 * 304.99655 * 17 16 15 36 36 H 1.08998 * 109.47560 * 184.99535 * 17 16 15 37 37 H 1.09002 * 110.24468 * 78.03845 * 19 18 17 38 38 H 1.09002 * 110.24463 * 316.12602 * 19 18 17 39 39 H 1.08995 * 110.97082 * 92.66028 * 20 19 18 40 40 H 1.09001 * 110.96924 * 216.42557 * 20 19 18 41 41 H 1.09000 * 110.48694 * 143.47575 * 21 20 19 42 42 H 1.08994 * 110.49106 * 266.12244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 6 2.4744 -6.1501 0.0044 13 6 1.7210 -7.4551 0.0044 14 8 0.5127 -7.4552 0.0035 15 8 2.3921 -8.6176 0.0065 16 6 1.6012 -9.8353 0.0058 17 6 2.5333 -11.0487 0.0077 18 7 3.2918 -11.0799 1.2607 19 6 2.8489 -11.7662 2.4800 20 6 3.7071 -11.1775 3.6216 21 6 4.9690 -10.7114 2.8592 22 6 4.4845 -10.4832 1.4443 23 8 5.0832 -9.8536 0.5981 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8713 -3.6040 0.8922 28 1 2.8725 -3.6048 -0.8877 29 1 0.8540 -5.0455 -0.8877 30 1 0.8532 -5.0442 0.8923 31 1 3.1005 -6.0915 0.8948 32 1 3.1018 -6.0932 -0.8852 33 1 0.9741 -9.8608 -0.8854 34 1 0.9708 -9.8596 0.8946 35 1 3.2233 -10.9782 -0.8331 36 1 1.9429 -11.9605 -0.0823 37 1 3.0216 -12.8389 2.3930 38 1 1.7925 -11.5682 2.6617 39 1 3.2029 -10.3343 4.0937 40 1 3.9560 -11.9426 4.3569 41 1 5.3516 -9.7841 3.2856 42 1 5.7352 -11.4863 2.8797 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:03 Heat of formation + Delta-G solvation = -144.905659 kcal Electronic energy + Delta-G solvation = -21807.473739 eV Core-core repulsion = 18365.804286 eV Total energy + Delta-G solvation = -3441.669453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74413 -40.16869 -36.88817 -36.48125 -34.92246 -33.67511 -32.63551 -30.12614 -29.22533 -27.89982 -25.91597 -23.88088 -22.61445 -22.13232 -20.49249 -19.97251 -19.70364 -17.55392 -17.34385 -16.94043 -16.41211 -16.15487 -15.85967 -15.55990 -14.81592 -14.42450 -14.17491 -14.06560 -13.74124 -13.45370 -13.18422 -12.92122 -12.70447 -12.53147 -12.20319 -11.98407 -11.84127 -11.65437 -11.61690 -11.41150 -10.96395 -10.73146 -10.55455 -10.53313 -10.41923 -10.31473 -9.97527 -9.60892 -9.25629 -9.08021 -8.99562 -8.28926 -5.93967 -3.96392 2.35692 2.37506 2.57526 2.78699 3.37246 3.41202 3.43969 3.99791 4.07019 4.37657 4.50183 4.53085 4.61490 4.69308 4.78157 4.96527 5.01889 5.09147 5.17636 5.29871 5.34386 5.35705 5.39593 5.41519 5.45944 5.56301 5.81159 6.11138 6.16361 6.25514 6.45524 6.53308 6.80745 6.81339 6.99238 7.20051 7.74809 7.89532 7.90231 7.95964 8.07113 8.49154 9.11007 9.67201 11.17421 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028212 B = 0.002572 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.232249 B =10882.827651 C =11328.378155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.110 4.110 11 C -0.107 4.107 12 C -0.111 4.111 13 C 0.460 3.540 14 O -0.510 6.510 15 O -0.347 6.347 16 C 0.045 3.955 17 C 0.129 3.871 18 N -0.625 5.625 19 C 0.101 3.899 20 C -0.133 4.133 21 C -0.156 4.156 22 C 0.518 3.482 23 O -0.514 6.514 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.386 -29.310 5.884 30.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.145 4.145 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.398 6.398 15 O -0.264 6.264 16 C -0.030 4.030 17 C 0.007 3.993 18 N -0.361 5.361 19 C -0.022 4.022 20 C -0.170 4.170 21 C -0.196 4.196 22 C 0.305 3.695 23 O -0.388 6.388 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.149 -28.886 5.354 30.015 hybrid contribution 0.096 0.789 0.043 0.796 sum 6.245 -28.097 5.397 29.285 Atomic orbital electron populations 1.69963 1.06065 1.26633 1.50907 1.25040 0.94846 0.99241 0.95425 0.86657 0.79564 0.83174 0.78594 1.20255 1.21329 1.20261 1.21251 0.93008 0.91167 1.50496 0.92727 1.19089 0.94013 0.91219 0.97312 1.21652 0.99139 0.93546 1.00445 1.21565 0.97051 0.92756 1.03088 1.21585 0.99847 0.87908 1.05528 1.24228 0.87498 0.86117 0.71807 1.90657 1.15716 1.87992 1.45427 1.86664 1.41107 1.14522 1.84132 1.23465 0.93856 0.82787 1.02939 1.21456 0.95052 0.96115 0.86665 1.48292 1.21276 1.53987 1.12527 1.22089 0.99655 0.96658 0.83836 1.22592 0.95363 1.02031 0.97059 1.22339 0.99043 1.04613 0.93624 1.20943 0.80638 0.77779 0.90102 1.90761 1.59562 1.39385 1.49081 0.92990 0.96559 0.96589 0.93227 0.93174 0.91598 0.91678 0.88064 0.87888 0.90196 0.91173 0.88726 0.88115 0.91001 0.90475 0.89848 0.89120 0.87886 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.21 9.11 -34.44 -0.31 -15.53 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 11 C -0.11 -1.97 4.50 -26.73 -0.12 -2.09 16 12 C -0.11 -1.68 5.81 -27.88 -0.16 -1.84 16 13 C 0.46 7.19 7.96 36.00 0.29 7.47 16 14 O -0.51 -9.22 15.73 -18.75 -0.29 -9.51 16 15 O -0.35 -4.86 9.80 -39.26 -0.38 -5.24 16 16 C 0.04 0.46 5.81 37.16 0.22 0.67 16 17 C 0.13 0.98 6.35 -4.04 -0.03 0.96 16 18 N -0.62 -5.14 2.91 -172.35 -0.50 -5.64 16 19 C 0.10 0.47 7.34 -3.12 -0.02 0.45 16 20 C -0.13 -0.56 7.18 -25.10 -0.18 -0.74 16 21 C -0.16 -1.02 6.86 -26.74 -0.18 -1.21 16 22 C 0.52 5.57 7.74 -10.77 -0.08 5.49 16 23 O -0.51 -7.90 17.51 5.55 0.10 -7.80 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 32 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 34 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 35 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -36.76 356.62 -8.09 -44.85 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -7.14 Total: -5.26 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.96 Total: -6.88 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.24 Total: -32.66 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.58 Total: -22.56 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.76 -8.09 -44.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.058 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds