Wall clock time and date at job start Tue Mar 31 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48504 * 109.47265 * 269.99871 * 3 2 1 5 5 H 1.48502 * 109.47140 * 29.99900 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00013 * 3 2 1 7 7 C 1.37874 * 120.00776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.47490 * 125.66173 * 359.68873 * 15 13 12 17 17 C 1.55290 * 104.77967 * 155.90547 * 16 15 13 18 18 C 1.54440 * 101.41331 * 36.62831 * 17 16 15 19 19 C 1.47200 * 125.67014 * 180.02562 * 15 13 12 20 20 O 1.42932 * 110.40477 * 83.97991 * 18 17 16 21 21 C 1.44978 * 104.55710 * 98.62391 * 20 18 17 22 22 C 1.54987 * 101.84435 * 35.27846 * 21 20 18 23 23 O 1.42541 * 110.63485 * 205.74881 * 18 17 16 24 24 H 0.96996 * 120.00667 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 26 26 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 27 27 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 33 33 H 1.09000 * 110.35772 * 274.86732 * 16 15 13 34 34 H 1.09004 * 110.35505 * 37.15617 * 16 15 13 35 35 H 1.09001 * 111.23243 * 278.53475 * 17 16 15 36 36 H 1.08997 * 110.93749 * 154.59788 * 17 16 15 37 37 H 1.08999 * 109.91070 * 300.90834 * 19 15 13 38 38 H 1.09007 * 109.91185 * 61.98309 * 19 15 13 39 39 H 1.08996 * 110.95555 * 277.14473 * 21 20 18 40 40 H 1.08998 * 110.95887 * 153.41237 * 21 20 18 41 41 H 1.09000 * 110.69104 * 206.50794 * 22 21 20 42 42 H 1.08996 * 110.68960 * 83.31610 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1938 0.0000 10 6 4.0218 -2.6363 -0.0001 11 6 5.5518 -2.6362 -0.0001 12 6 6.0619 -4.0786 -0.0009 13 6 7.5689 -4.0785 -0.0003 14 8 8.1752 -3.0282 0.0002 15 7 8.2429 -5.2456 -0.0014 16 6 7.6352 -6.5895 0.0034 17 6 8.7183 -7.5162 -0.6128 18 6 10.0122 -6.8956 -0.0420 19 6 9.7077 -5.3909 -0.0004 20 8 10.2705 -7.4006 1.2700 21 6 11.2495 -8.4510 1.0699 22 6 12.0964 -7.8788 -0.0952 23 8 11.1209 -7.1738 -0.8936 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6806 0.8905 26 1 3.8752 -0.6794 -0.8895 27 1 3.6588 -3.1499 -0.8903 28 1 3.6581 -3.1504 0.8896 29 1 5.9150 -2.1224 0.8899 30 1 5.9151 -2.1222 -0.8900 31 1 5.6985 -4.5930 0.8888 32 1 5.6986 -4.5920 -0.8912 33 1 7.4044 -6.8977 1.0231 34 1 6.7342 -6.6004 -0.6099 35 1 8.7079 -7.4659 -1.7016 36 1 8.5930 -8.5433 -0.2699 37 1 10.1297 -4.9025 -0.8787 38 1 10.1240 -4.9497 0.9053 39 1 10.7666 -9.3838 0.7792 40 1 11.8591 -8.5909 1.9626 41 1 12.5549 -8.6838 -0.6695 42 1 12.8548 -7.1923 0.2809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806788231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:12 Heat of formation + Delta-G solvation = -132.004986 kcal Electronic energy + Delta-G solvation = -22135.529133 eV Core-core repulsion = 18694.419096 eV Total energy + Delta-G solvation = -3441.110037 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.47461 -39.65604 -36.95857 -35.64859 -34.99741 -32.59504 -31.70821 -30.22513 -30.00576 -28.13448 -25.79519 -24.22687 -23.44518 -22.00328 -21.29510 -20.00020 -19.35054 -18.01557 -17.47976 -16.76432 -16.47437 -16.20838 -15.87028 -15.50165 -15.01517 -14.80427 -14.20280 -14.14952 -13.90851 -13.39678 -13.24690 -13.05989 -12.88746 -12.57015 -12.41636 -12.24236 -12.14787 -12.04948 -11.74266 -11.69977 -11.08243 -10.80333 -10.70225 -10.50403 -10.16840 -9.94474 -9.79039 -9.61561 -9.40459 -9.09060 -8.87006 -8.46758 -5.98029 -3.95352 2.58962 2.65944 2.89481 3.37410 3.37743 3.44590 3.51125 3.87383 4.01559 4.04501 4.33460 4.48600 4.52672 4.67918 4.76959 4.85084 4.87849 5.07399 5.14735 5.21553 5.23598 5.25394 5.30812 5.34816 5.37546 5.51047 5.57906 5.78137 5.98690 6.06421 6.19761 6.44886 6.55786 6.71678 6.85145 7.02376 7.31797 7.41524 7.54259 7.87459 8.14403 8.60962 9.06962 9.65459 11.15442 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.050203 B = 0.002540 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.599659 B =11022.176423 C =11328.011423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.133 4.133 13 C 0.531 3.469 14 O -0.533 6.533 15 N -0.624 5.624 16 C 0.104 3.896 17 C -0.153 4.153 18 C 0.246 3.754 19 C 0.107 3.893 20 O -0.357 6.357 21 C 0.013 3.987 22 C 0.017 3.983 23 O -0.364 6.364 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.981 -22.135 0.375 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.172 4.172 13 C 0.321 3.679 14 O -0.409 6.409 15 N -0.361 5.361 16 C -0.019 4.019 17 C -0.191 4.191 18 C 0.168 3.832 19 C -0.017 4.017 20 O -0.277 6.277 21 C -0.063 4.063 22 C -0.059 4.059 23 O -0.284 6.284 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 25.023 -21.219 0.361 32.811 hybrid contribution 0.490 0.582 0.045 0.762 sum 25.513 -20.637 0.405 32.817 Atomic orbital electron populations 1.69919 1.06297 1.26807 1.51559 1.25044 0.94737 0.99228 0.94641 0.86774 0.80447 0.83545 0.78534 1.20326 1.21480 1.18879 1.21186 0.89667 0.94371 1.50418 0.91105 1.19580 0.96895 0.92511 0.96338 1.21472 0.91612 0.99926 1.00942 1.21506 0.97254 0.92755 1.02976 1.21764 0.89505 1.01769 1.04187 1.20836 0.90646 0.81420 0.74985 1.90712 1.70553 1.30441 1.49167 1.48502 1.06042 1.06327 1.75268 1.22388 0.96661 0.81227 1.01648 1.23384 0.93350 1.00006 1.02382 1.23590 0.88010 0.93639 0.77953 1.21882 0.82533 0.93257 1.04005 1.89264 1.61246 1.51284 1.25933 1.24493 0.90015 0.91848 0.99922 1.24327 0.92425 0.96776 0.92356 1.88891 1.28220 1.77046 1.34290 0.92838 0.96604 0.97034 0.92852 0.92810 0.91734 0.91741 0.88918 0.88930 0.90452 0.89389 0.88481 0.88831 0.89184 0.89939 0.90229 0.87008 0.87787 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.62 27.47 -169.99 -4.67 17.95 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.61 6.54 56.52 0.37 -6.24 16 7 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.13 -1.79 4.70 -27.88 -0.13 -1.92 16 13 C 0.53 7.89 7.85 -10.98 -0.09 7.81 16 14 O -0.53 -10.07 16.31 5.56 0.09 -9.98 16 15 N -0.62 -7.42 3.33 -170.54 -0.57 -7.99 16 16 C 0.10 0.86 6.71 -2.29 -0.02 0.85 16 17 C -0.15 -1.11 6.52 -24.76 -0.16 -1.27 16 18 C 0.25 2.19 1.27 -25.68 -0.03 2.16 16 19 C 0.11 1.21 6.43 -3.36 -0.02 1.18 16 20 O -0.36 -3.10 11.05 -59.02 -0.65 -3.75 16 21 C 0.01 0.06 7.96 38.21 0.30 0.37 16 22 C 0.02 0.09 8.08 38.21 0.31 0.40 16 23 O -0.36 -3.15 10.94 -59.02 -0.65 -3.80 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 30 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.61 7.48 -51.93 -0.39 0.22 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 38 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -35.92 342.32 -8.20 -44.12 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -7.06 Total: -5.04 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.64 Total: -8.83 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.21 Total: -35.84 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.21 Total: -17.52 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.67 Total: 17.95 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.92 -8.20 -44.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806788231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.882 kcal (2) G-P(sol) polarization free energy of solvation -35.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds