Wall clock time and date at job start Tue Mar 31 2020 05:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99527 * 2 1 4 4 H 1.48504 * 109.47265 * 269.99871 * 3 2 1 5 5 H 1.48502 * 109.47140 * 29.99900 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00013 * 3 2 1 7 7 C 1.37874 * 120.00776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.47490 * 125.66173 * 359.68873 * 15 13 12 17 17 C 1.55290 * 104.77967 * 155.90547 * 16 15 13 18 18 C 1.54440 * 101.41331 * 36.62831 * 17 16 15 19 19 C 1.47200 * 125.67014 * 180.02562 * 15 13 12 20 20 O 1.42932 * 110.40477 * 83.97991 * 18 17 16 21 21 C 1.44978 * 104.55710 * 98.62391 * 20 18 17 22 22 C 1.54987 * 101.84435 * 35.27846 * 21 20 18 23 23 O 1.42541 * 110.63485 * 205.74881 * 18 17 16 24 24 H 0.96996 * 120.00667 * 0.02562 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 26 26 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 27 27 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 33 33 H 1.09000 * 110.35772 * 274.86732 * 16 15 13 34 34 H 1.09004 * 110.35505 * 37.15617 * 16 15 13 35 35 H 1.09001 * 111.23243 * 278.53475 * 17 16 15 36 36 H 1.08997 * 110.93749 * 154.59788 * 17 16 15 37 37 H 1.08999 * 109.91070 * 300.90834 * 19 15 13 38 38 H 1.09007 * 109.91185 * 61.98309 * 19 15 13 39 39 H 1.08996 * 110.95555 * 277.14473 * 21 20 18 40 40 H 1.08998 * 110.95887 * 153.41237 * 21 20 18 41 41 H 1.09000 * 110.69104 * 206.50794 * 22 21 20 42 42 H 1.08996 * 110.68960 * 83.31610 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1938 0.0000 10 6 4.0218 -2.6363 -0.0001 11 6 5.5518 -2.6362 -0.0001 12 6 6.0619 -4.0786 -0.0009 13 6 7.5689 -4.0785 -0.0003 14 8 8.1752 -3.0282 0.0002 15 7 8.2429 -5.2456 -0.0014 16 6 7.6352 -6.5895 0.0034 17 6 8.7183 -7.5162 -0.6128 18 6 10.0122 -6.8956 -0.0420 19 6 9.7077 -5.3909 -0.0004 20 8 10.2705 -7.4006 1.2700 21 6 11.2495 -8.4510 1.0699 22 6 12.0964 -7.8788 -0.0952 23 8 11.1209 -7.1738 -0.8936 24 1 -0.4851 0.8400 -0.0004 25 1 3.8746 -0.6806 0.8905 26 1 3.8752 -0.6794 -0.8895 27 1 3.6588 -3.1499 -0.8903 28 1 3.6581 -3.1504 0.8896 29 1 5.9150 -2.1224 0.8899 30 1 5.9151 -2.1222 -0.8900 31 1 5.6985 -4.5930 0.8888 32 1 5.6986 -4.5920 -0.8912 33 1 7.4044 -6.8977 1.0231 34 1 6.7342 -6.6004 -0.6099 35 1 8.7079 -7.4659 -1.7016 36 1 8.5930 -8.5433 -0.2699 37 1 10.1297 -4.9025 -0.8787 38 1 10.1240 -4.9497 0.9053 39 1 10.7666 -9.3838 0.7792 40 1 11.8591 -8.5909 1.9626 41 1 12.5549 -8.6838 -0.6695 42 1 12.8548 -7.1923 0.2809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806788231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:12 Heat of formation + Delta-G solvation = -156.977751 kcal Electronic energy + Delta-G solvation = -22136.612034 eV Core-core repulsion = 18694.419096 eV Total energy + Delta-G solvation = -3442.192938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10071 -40.66528 -37.85836 -36.65393 -36.21288 -34.61489 -32.66475 -31.66358 -30.67770 -29.05252 -27.33619 -25.00480 -24.12613 -23.39371 -22.10329 -21.70051 -20.34317 -18.85996 -18.57351 -18.30416 -17.39003 -17.15500 -16.58026 -16.45041 -16.24696 -15.98268 -15.57286 -15.13109 -14.76892 -14.64859 -14.34086 -13.96302 -13.84923 -13.70851 -13.60378 -13.56290 -13.39496 -12.98558 -12.85505 -12.66764 -12.33432 -12.27423 -12.07664 -11.75486 -11.52053 -11.34605 -11.26371 -11.22795 -10.95797 -10.75479 -10.69620 -9.82889 -8.29163 -6.31973 1.34928 1.36394 1.49383 1.53622 1.72126 2.36266 2.39162 2.76594 3.06163 3.23017 3.39369 3.63466 3.73639 3.98591 4.05088 4.07905 4.11168 4.17555 4.25341 4.36487 4.47468 4.58635 4.60642 4.62640 4.66620 4.73914 4.75733 4.81251 4.85369 4.90695 4.99000 5.12331 5.14477 5.22826 5.27284 5.60173 5.65977 5.68954 6.02270 6.30011 6.34532 6.75812 7.04984 7.32757 8.87317 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.050203 B = 0.002540 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.599659 B =11022.176423 C =11328.011423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.018 4.018 10 C -0.092 4.092 11 C -0.098 4.098 12 C -0.123 4.123 13 C 0.527 3.473 14 O -0.586 6.586 15 N -0.620 5.620 16 C 0.096 3.904 17 C -0.144 4.144 18 C 0.251 3.749 19 C 0.100 3.900 20 O -0.378 6.378 21 C 0.011 3.989 22 C 0.010 3.990 23 O -0.383 6.383 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.401 -23.936 0.325 35.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.055 4.055 10 C -0.130 4.130 11 C -0.136 4.136 12 C -0.162 4.162 13 C 0.318 3.682 14 O -0.466 6.466 15 N -0.355 5.355 16 C -0.025 4.025 17 C -0.182 4.182 18 C 0.172 3.828 19 C -0.024 4.024 20 O -0.299 6.299 21 C -0.064 4.064 22 C -0.065 4.065 23 O -0.304 6.304 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 26.461 -23.089 0.311 35.120 hybrid contribution 0.075 1.027 0.083 1.033 sum 26.536 -22.062 0.394 34.511 Atomic orbital electron populations 1.70054 1.08065 1.28059 1.52926 1.25983 0.95623 1.03352 0.94352 0.85707 0.79368 0.78716 0.79166 1.19229 1.20713 1.17718 1.21536 0.92037 0.93246 1.49863 0.94326 1.19583 0.93964 0.95893 0.96081 1.21326 0.93353 0.96778 1.01515 1.21302 0.95083 0.95428 1.01806 1.21666 0.88545 0.99402 1.06596 1.21029 0.91174 0.81490 0.74543 1.90687 1.71521 1.32451 1.51922 1.48513 1.06516 1.07047 1.73428 1.22713 0.97645 0.79284 1.02893 1.23384 0.91583 1.00807 1.02394 1.23448 0.89031 0.91823 0.78466 1.21930 0.82234 0.95667 1.02559 1.89235 1.62270 1.52568 1.25818 1.24771 0.89543 0.91457 1.00667 1.24592 0.91903 0.97317 0.92693 1.88874 1.28917 1.77596 1.35002 0.92522 0.96874 0.96899 0.92197 0.92322 0.93100 0.92889 0.86595 0.86271 0.89468 0.87381 0.88259 0.86419 0.90583 0.91590 0.88344 0.85156 0.85247 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 2 C 0.00 0.21 5.47 84.65 0.46 0.68 16 3 Si 0.95 46.51 27.47 68.60 1.88 48.40 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.25 -11.90 6.54 99.48 0.65 -11.25 16 7 C -0.53 -31.40 9.66 25.60 0.25 -31.15 16 8 H 0.04 2.47 7.99 -2.91 -0.02 2.44 16 9 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 10 C -0.09 -3.59 5.15 30.59 0.16 -3.43 16 11 C -0.10 -3.31 4.50 30.59 0.14 -3.17 16 12 C -0.12 -3.05 4.70 29.85 0.14 -2.91 16 13 C 0.53 15.29 7.85 87.66 0.69 15.97 16 14 O -0.59 -22.55 16.31 -3.02 -0.05 -22.60 16 15 N -0.62 -14.09 3.33 -811.86 -2.71 -16.79 16 16 C 0.10 1.34 6.71 86.98 0.58 1.92 16 17 C -0.14 -1.69 6.52 31.87 0.21 -1.48 16 18 C 0.25 4.11 1.27 31.28 0.04 4.15 16 19 C 0.10 2.27 6.43 86.44 0.56 2.82 16 20 O -0.38 -5.90 11.05 -126.23 -1.40 -7.29 16 21 C 0.01 0.07 7.96 72.66 0.58 0.65 16 22 C 0.01 0.08 8.08 72.66 0.59 0.67 16 23 O -0.38 -6.11 10.94 -126.23 -1.38 -7.49 16 24 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 26 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 30 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 31 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.12 2.36 7.85 -2.39 -0.02 2.34 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.10 7.48 -2.39 -0.02 1.08 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.89 8.06 -2.39 -0.02 1.88 16 38 H 0.07 1.67 8.07 -2.38 -0.02 1.65 16 39 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.13 0.36 8.14 -2.39 -0.02 0.35 16 41 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -79.55 342.32 2.09 -77.46 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 0.93 Total: 4.91 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.51 Total: -16.03 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.41 Total: -77.35 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -2.83 Total: -37.39 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.40 kcal Total: -79.55 2.09 -77.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806788231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.514 kcal (2) G-P(sol) polarization free energy of solvation -79.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds