Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99802 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 11 16 16 H 1.08999 * 110.04601 * 299.99096 * 15 13 12 17 17 C 1.54015 * 110.05958 * 61.45773 * 15 13 12 18 18 C 1.54319 * 106.57649 * 118.83877 * 17 15 13 19 19 C 1.54994 * 104.26437 * 23.48672 * 18 17 15 20 20 C 1.53650 * 110.05704 * 178.47813 * 15 13 12 21 21 O 1.43060 * 110.65269 * 98.85182 * 20 15 13 22 22 C 1.44955 * 104.60796 * 213.71586 * 21 20 15 23 23 C 1.54967 * 101.82353 * 35.40532 * 22 21 20 24 24 O 1.42689 * 110.85751 * 336.98822 * 20 15 13 25 25 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 26 26 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 27 27 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 28 28 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 29 29 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 30 30 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 31 31 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 32 32 H 0.96996 * 120.00353 * 0.02562 * 12 11 10 33 33 H 1.09000 * 110.03378 * 238.11282 * 17 15 13 34 34 H 1.08997 * 110.03650 * 359.51113 * 17 15 13 35 35 H 1.08994 * 110.47181 * 142.18242 * 18 17 15 36 36 H 1.09001 * 110.46835 * 264.79266 * 18 17 15 37 37 H 1.09000 * 110.76400 * 80.97964 * 19 18 17 38 38 H 1.09002 * 110.76399 * 204.19242 * 19 18 17 39 39 H 1.09001 * 110.95997 * 277.26650 * 22 21 20 40 40 H 1.09001 * 110.99072 * 153.54826 * 22 21 20 41 41 H 1.09001 * 110.68969 * 206.42348 * 23 22 21 42 42 H 1.09000 * 110.84297 * 83.29438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 6 4.0214 -2.6367 -0.0114 11 6 5.5515 -2.6368 -0.0115 12 7 6.0397 -4.0180 -0.0182 13 6 7.3647 -4.2644 -0.0199 14 8 8.1529 -3.3426 -0.0155 15 6 7.8670 -5.6852 -0.0274 16 1 7.5092 -6.2126 0.8569 17 6 7.3908 -6.4071 -1.3018 18 6 8.6612 -6.8250 -2.0718 19 6 9.7638 -6.8875 -0.9842 20 6 9.4029 -5.7010 -0.0664 21 8 9.9388 -5.9072 1.2439 22 6 11.1683 -5.1396 1.2610 23 6 10.7903 -3.9151 0.3896 24 8 9.9100 -4.4809 -0.6052 25 1 -0.4850 0.8401 0.0040 26 1 3.8752 -0.6760 -0.8923 27 1 3.8746 -0.6849 0.8876 28 1 3.6577 -3.1546 0.8760 29 1 3.6584 -3.1464 -0.9039 30 1 5.9147 -2.1190 -0.8992 31 1 5.9148 -2.1269 0.8808 32 1 5.4093 -4.7552 -0.0221 33 1 6.8084 -7.2892 -1.0358 34 1 6.7892 -5.7323 -1.9106 35 1 8.5236 -7.8034 -2.5319 36 1 8.9120 -6.0795 -2.8265 37 1 9.7136 -7.8287 -0.4367 38 1 10.7508 -6.7513 -1.4263 39 1 11.9855 -5.7021 0.8096 40 1 11.4228 -4.8324 2.2754 41 1 11.6768 -3.4876 -0.0790 42 1 10.2691 -3.1634 0.9823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806793009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = -137.253396 kcal Electronic energy + Delta-G solvation = -22977.897766 eV Core-core repulsion = 19536.560140 eV Total energy + Delta-G solvation = -3441.337626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24568 -39.08538 -36.54628 -35.44615 -35.00028 -33.24415 -31.50785 -30.05378 -29.64186 -27.05868 -26.69190 -23.42964 -23.09167 -21.60479 -20.96645 -20.55939 -19.51827 -17.50119 -17.21892 -16.71266 -16.35400 -16.02374 -15.56175 -15.26993 -14.85344 -14.55669 -14.16103 -13.97406 -13.87014 -13.23591 -12.99784 -12.76153 -12.64057 -12.57822 -12.25217 -12.03782 -11.89864 -11.59257 -11.49321 -11.34888 -11.05601 -10.96701 -10.86401 -10.25149 -10.11828 -9.92366 -9.76004 -9.69847 -9.23099 -9.15974 -8.72669 -8.54922 -6.05821 -4.04342 2.84633 3.18160 3.31659 3.39134 3.43825 3.47747 3.76777 4.14991 4.28820 4.45026 4.48012 4.69586 4.75823 4.94021 5.00309 5.05342 5.19940 5.22573 5.28377 5.32583 5.37622 5.53915 5.56741 5.62173 5.69910 5.74517 5.76160 5.76889 5.85355 6.00671 6.05431 6.42153 6.47841 6.75383 6.84136 7.07696 7.24346 7.37852 7.71984 7.79313 8.47350 8.51806 8.98196 9.56590 11.07479 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030455 B = 0.003269 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.165743 B = 8564.134996 C = 9097.801824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.288 1.288 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.117 3.883 12 N -0.729 5.729 13 C 0.518 3.482 14 O -0.519 6.519 15 C -0.123 4.123 16 H 0.113 0.887 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.143 4.143 20 C 0.269 3.731 21 O -0.370 6.370 22 C 0.015 3.985 23 C 0.031 3.969 24 O -0.338 6.338 25 H 0.263 0.737 26 H 0.018 0.982 27 H 0.014 0.986 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.397 0.603 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.656 -15.546 -0.562 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.214 1.214 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.381 5.381 13 C 0.303 3.697 14 O -0.394 6.394 15 C -0.145 4.145 16 H 0.131 0.869 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.181 4.181 20 C 0.190 3.810 21 O -0.290 6.290 22 C -0.062 4.062 23 C -0.046 4.046 24 O -0.258 6.258 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.231 0.769 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.920 -14.768 -0.601 27.272 hybrid contribution 0.067 0.601 0.176 0.630 sum 22.987 -14.167 -0.425 27.005 Atomic orbital electron populations 1.69916 1.06318 1.26941 1.51073 1.25031 0.94747 0.99236 0.94480 0.86775 0.80415 0.83526 0.78578 1.20259 1.18896 1.21358 1.21107 0.89341 0.94503 1.51009 0.91012 1.19500 0.97233 0.91556 0.96611 1.21698 0.90784 1.00946 1.01667 1.21593 0.95961 0.81343 1.01701 1.46171 1.06636 1.09755 1.75559 1.20133 0.82494 0.90401 0.76684 1.90685 1.54776 1.45842 1.48101 1.22193 0.95160 0.95542 1.01628 0.86931 1.22131 0.98363 1.00274 0.94432 1.22273 0.93866 1.01915 0.97520 1.23024 1.00050 0.97811 0.97228 1.23373 0.90823 0.86055 0.80702 1.89150 1.37183 1.70505 1.32190 1.24441 0.87713 0.91579 1.02429 1.24114 0.93595 0.96314 0.90535 1.88939 1.63151 1.34919 1.38760 0.92707 0.96334 0.96800 0.92181 0.92148 0.91951 0.92044 0.76896 0.90283 0.90446 0.90779 0.90779 0.89520 0.90373 0.90946 0.87680 0.89056 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 10 C -0.11 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.12 1.99 5.67 -4.04 -0.02 1.96 16 12 N -0.73 -10.35 5.40 -60.29 -0.33 -10.67 16 13 C 0.52 7.73 6.83 -10.99 -0.08 7.65 16 14 O -0.52 -9.42 12.46 -19.34 -0.24 -9.66 16 15 C -0.12 -1.43 3.05 -90.91 -0.28 -1.70 16 16 H 0.11 1.17 8.06 -51.93 -0.42 0.75 16 17 C -0.11 -1.04 6.38 -25.51 -0.16 -1.21 16 18 C -0.12 -1.01 6.83 -24.99 -0.17 -1.18 16 19 C -0.14 -1.30 6.31 -25.00 -0.16 -1.46 16 20 C 0.27 3.19 1.02 -25.72 -0.03 3.17 16 21 O -0.37 -4.41 11.04 -59.03 -0.65 -5.07 16 22 C 0.01 0.13 7.96 38.20 0.30 0.44 16 23 C 0.03 0.34 7.47 38.20 0.29 0.63 16 24 O -0.34 -4.70 8.34 -67.87 -0.57 -5.26 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.44 7.19 -51.93 -0.37 0.07 16 27 H 0.01 0.32 7.58 -51.93 -0.39 -0.07 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.40 4.60 8.44 -40.82 -0.34 4.26 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.77 7.59 -51.93 -0.39 0.38 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.07 7.27 -51.93 -0.38 0.69 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -34.00 335.50 -8.57 -42.57 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.96 Total: 0.61 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.99 Total: -7.67 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.45 Total: -37.82 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.46 Total: -19.98 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.00 -8.57 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806793009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.680 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds